TCONS_00053825 (transcript) - C. hemisphaerica

Overview
NameTCONS_00053825
Unique NameTCONS_00053825
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1916

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00053825 ID=TCONS_00053825|Name=TCONS_00053825|organism=Clytia hemisphaerica|type=transcript|length=1916bp
ACGTTTACAATTCTGGCAGTCTCGATTTCCGCCCCCGCCCAACATTAAAC
GCCCGTCACTAGACGCTGATTCCGATGATGAAGGTTCTTATACAGTCAAC
GATATGTATAATTCGTTAGATCGTCGCCACGCCCATTCGCGAACCATTTC
TACGCGCCGCGTGTGCTGGCATCGGAACACGAGCATCAGCATGAAAGAAT
ACACGTTGTCAATTCAGAACAGTATCAGTGGAGAGTTGTTCCGTCGTTAC
AAGAACACGAGTAAATGGCAAAAATTGTGGGTGGTTTTCACCAACTTCTG
CTTGTACTTTTTCAAGACTGGTGACGAAGACGCACCATTGGCCAATTTAC
CACTACTTGGTTACACTATAAGCCGCCCAACTGAGGCTGAAACACACGAA
GAATTCGCATTCAAATTACAATTCAAGACACATCAATATTTATTCAAGAC
GGATAATGAATATACATACGAAAGATGGTATGAAGTTTTGAGTACCGCAA
CCAAAGCTTCGAACACGTTATCAAGTAGATCAAGACGTAAATTACCTTCC
ATCAGTTGATTTTATATGAACAGAATTTCAatagagaaaattaaaaatgg
ttGACTGGTCTCCACTCCCGTTGGTTGAGTGGAAATATGTAACAAAGACA
ATGGCCATTTCTTGCTCCCAGCCGGCatatgaaattgtttcaacgctcat
ttaacgttagatggacgttacGAGTATTATATGGAAGCTGCGTGTATTAT
ATGGACGTTACGAGTATTAGATGGACGTTGCGAGTTATAGATAGACGTTA
CGAGAATTTTTTGGACGTTACGAGTATCACATGGACGTTACGAgcattat
atggacgttatgagtattatatggacgttttgagtattatattagcgtta
cgaccgttatatgaacgttacgGGTATTATATGTATGGAGGCTGATTTGA
CGTTATATGAAGTTGATACTGAAAAGATAATATGCAAGTTCAGTTTGCAG
TATCCAAATAGTTTCAACGGACTAGCTGCTCGAGATCATTAGTGGATCAA
GATGGTCAAAGAGTTTCTTCATAAATTGGGGGATAATTCTGTCCTGTTTC
ATGACCACGTGAATTCATAGACATGTGATTTGTAGTGAAAATCTTTAGTC
AAATATTTTATACATATAAAAATTGGTATACATGAACATTGGGTTTAACT
CAAGGTAATCAATTTTAAAGATTCTGCTCATAATAAAAAGTCGGTTTTTT
TTGACGCAGCCGATCAATCAAAATGACCTTTCCTTTCTTTTCTTACGGTG
CTAGTTAGAAAACTCCTATAAATTGAACAGATACTGTACATTTTAACAGT
ATCTTCGGGCGCCCCCTACAGGAGTTGAACAAAATCACTTGATCATCTAA
ACTAGCATTCATTtggtttcaaaaatgttttctcaaTTGATGTCATTATT
GACAAGCTTCAGAGACATTGATTATAGCCAAGTAGTTAAACATATTATGT
AGTTATTCCTTCttatattatttttataatttaaaatcttTACGTACTGT
ATTTGTAATATACATTTACCCCtttgaagaaattatttttatatatattt
ggTAGAGACacaattttttggtttttcataaaatattttctaatgaTTTT
ACTATATTATTCATCATCTTTTATACATAGTAGCACACCAAAATGATTTT
TCagcacaatttttttataatgttttataattattaaaaaatcaatttta
caatttttctgtTTCCATTTTTGTATGTACTTATAATATTATTATAACAA
GTTTATTTTTTGTAGTGCGTTTTTCAAACTAAAGTAAAATACTTTATATA
CTACCttataaatcaatcaatcagccTCAAAAACTTTTCCAGCGTTTATC
CGAGCAGATTCTGCTc
Run BLAST on NCBI

transcript from alignment at scaffold_234:62918..66780-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00053825 ID=TCONS_00053825|Name=TCONS_00053825|organism=Clytia hemisphaerica|type=transcript|length=3863bp|location=Sequence derived from alignment at scaffold_234:62918..66780- (Clytia hemisphaerica)
ACGTTTACAATTCTGGCAGTCTCGATTTCCGCCCCCGCCCAACATTAAAC
GCCCGTCACTAGACGCTGATTCCGATGATGAAGGTTCTTATACAGTCAAC
GATATGTATAATTCGTTAGATCGTCGCCACGCCCATTCGCGAACCATTTC
TACGCGCCGCGTGTGCTGGCATCGGAACACGAGCATCAGCATGAAAGAAT
ACACGTTGTCAATTCAGGTAATAATACTACTAGCAGTCAATTGGAATCGC
AGTTTTTCTTGTTTTTGACTTTGTAAAAAAATGCCCTAATTTTATTTTCG
CTTTTTTTTTTGTCCTACAGAACAGTATCAGTGGAGAGTTGTTCCGTCGT
TACAAGAACACGAGTAAATGGCAAAAATTGTGGGTGGTTTTCACCAACTT
CTGCTTGTACTTTTTCAAGACTGGTGACGTAAGTATGACGTCATTTCTTT
ATCTGAAAGATCCTAAGGGGTTATTTATGTCTATGGAATTTAGGGAAATC
TGAAAGTCTGTAATTATATCCCTTGCACTAAAATTGATTTGCTAAATTGG
AATTTCCCACTGTAATTTTTTTGAGGCAGAAATCTGCCTCGCAGCTCGTA
CCCGTCCTGTATATATCAGATTATAAAAATACAGGACGGGTCTCCTGTCT
ACCTGATGAATGGAATAATCTCGTTTTTTCTTGTAAAAATCATCCAATCT
GCACAAGTTTGATCGCTTGTGATCGCTTGGTTGTACAGTAATTGGATGCA
AATTCTGTTGCCTTGTAGAGGCTTCAAACGCCATGGACCGATTCGCGACA
ACTTTTGTGTCTCACTTATCCAAATCACTGCGTTAAAAATGTCCCTAACT
TTGTGTGGGCTAACTAGGCAAGCCAAAACATATAGGTTCTTTAATGAGAA
AGAGAAAGAGAAATCAGAGAGTAAGAGAGGCAGATAGAAAGAGTGAATAA
AGAGAGCTTAAAGTTATGGTTAAAAAAAAAGACATCAGTTCGCAGGAAGT
AGCTTTCACTATTTTTTGCTGAGTCAGAAGAAAGGAGAATGGGCGAGAAG
GAAAAAGTAATAAAAAAGGTTAGTTTAATTTTTGTTGCAGTTTTATTCTA
ATTTTCGTTGTAGTTTGATTTTGACATTTTATGAAGACTAAATTTTTATT
TAAGCTGAATAATTCTTTGAGCAGATGAACAATGAAACCTTTTTACTATT
TAGGAAGACGCACCATTGGCCAATTTACCACTACTTGGTTACACTATAAG
CCGCCCAACTGAGGTATGATATGTTAATTATGCTGATCCCATCTTTTGAG
GAGTAATAGAGTATCCATCACTGATTTCAGACCTGTGCTCAAATTTTTCG
TTTCTTTTTAAATAAAAACTTAAATCCCTCGACGTAGGGCTGAAACGGCT
GAAAATGACCTAAAATGCGCTAAAATAGACCTACTTCACAGTGCTGCAAC
TTTTTATTTAAGAAAGATATGAAGAATTTGAATACAGGTTTGAAATCAAT
GATATTGGAATATTTGAGGTGTCAAAAAATCTAGGGTTCAGTTAAATGAT
GTGGGGAATCCAGGGGGGGGGTCAGTAAAACGATGTCGAAAATCATGGGT
GGTCCAAAAAATGAGAAAAATAATCTAAGGGGTTCCTGAAAAATTGAAAA
AATAAGATCCGGGGGTCACCTTTCCTCCCAAAAAAGACCTCCTCAACATA
GGGGGTATAAATTCTTTTTGGAATATCCCATCCTCTCAACTCGATTCTCG
TTTAGGCTGAAACACACGAAGAATTCGCATTCAAATTACAATTCAAGACA
CATCAATATTTATTCAAGACGGATAATGAATATACATACGAAAGGTACGT
GATTCTGCCCCACCCTAAATCTGCCCGCCCTAAATCTGCCTAACTCTGCT
TCAGTTTTTCCTTGTTAATTTCTTATCTGCCAACGTAAGGTCTCCCAGTC
TATAAAAAACTGAAGTGTATATTTTAGTGGACCGACTGATTTGCCCGCAT
TTAGTTTGACCAATATTGAGATTAACTTGCATTTTCATCATGATAAGAAG
AAAGCGTTTTTCGAGGCAAATTTCTTAAGAAAGAACATGCAATTCGTAAA
TGTTACATGCTTTTTTATAAGGAGCAGTAAATGTTAGCAGCTCTTTAGTT
TTCAAAATTTCTAAGTCTCGAAATATTCATCCTGCAAGTGTTATAAAAAA
CAAGCTTGTCAGTCAAACTACCTAGAACCCAGTCCCTTAGTCCAATTTCC
CATGATTCAATAAGTACTCATCAAAGGGTTGTATCATGTCCCTCGCTGAA
ATCTCAAAGTGGCGCAAATAATTCTAGATTCCTTGATTGGAGTGTCTTTT
TTTGTGTTGTTGTTTTTTGCAACTTCAAGTTCTTAAATAAAATTATCTTT
CTCCTTTCATTACTTCATTAGATGGTATGAAGTTTTGAGTACCGCAACCA
AAGCTTCGAACACGTTATCAAGTAGATCAAGACGTAAATTACCTTCCATC
AGTTGATTTTATATGAACAGAATTTCAATAGAGAAAATTAAAAATGGTTG
ACTGGTCTCCACTCCCGTTGGTTGAGTGGAAATATGTAACAAAGACAATG
GCCATTTCTTGCTCCCAGCCGGCATATGAAATTGTTTCAACGCTCATTTA
ACGTTAGATGGACGTTACGAGTATTATATGGAAGCTGCGTGTATTATATG
GACGTTACGAGTATTAGATGGACGTTGCGAGTTATAGATAGACGTTACGA
GAATTTTTTGGACGTTACGAGTATCACATGGACGTTACGAGCATTATATG
GACGTTATGAGTATTATATGGACGTTTTGAGTATTATATTAGCGTTACGA
CCGTTATATGAACGTTACGGGTATTATATGTATGGAGGCTGATTTGACGT
TATATGAAGTTGATACTGAAAAGATAATATGCAAGTTCAGTTTGCAGTAT
CCAAATAGTTTCAACGGACTAGCTGCTCGAGATCATTAGTGGATCAAGAT
GGTCAAAGAGTTTCTTCATAAATTGGGGGATAATTCTGTCCTGTTTCATG
ACCACGTGAATTCATAGACATGTGATTTGTAGTGAAAATCTTTAGTCAAA
TATTTTATACATATAAAAATTGGTATACATGAACATTGGGTTTAACTCAA
GGTAATCAATTTTAAAGATTCTGCTCATAATAAAAAGTCGGTTTTTTTTG
ACGCAGCCGATCAATCAAAATGACCTTTCCTTTCTTTTCTTACGGTGCTA
GTTAGAAAACTCCTATAAATTGAACAGATACTGTACATTTTAACAGTATC
TTCGGGCGCCCCCTACAGGAGTTGAACAAAATCACTTGATCATCTAAACT
AGCATTCATTTGGTTTCAAAAATGTTTTCTCAATTGATGTCATTATTGAC
AAGCTTCAGAGACATTGATTATAGCCAAGTAGTTAAACATATTATGTAGT
TATTCCTTCTTATATTATTTTTATAATTTAAAATCTTTACGTACTGTATT
TGTAATATACATTTACCCCTTTGAAGAAATTATTTTTATATATATTTGGT
AGAGACACAATTTTTTGGTTTTTCATAAAATATTTTCTAATGATTTTACT
ATATTATTCATCATCTTTTATACATAGTAGCACACCAAAATGATTTTTCA
GCACAATTTTTTTATAATGTTTTATAATTATTAAAAAATCAATTTTACAA
TTTTTCTGTTTCCATTTTTGTATGTACTTATAATATTATTATAACAAGTT
TATTTTTTGTAGTGCGTTTTTCAAACTAAAGTAAAATACTTTATATACTA
CCTTATAAATCAATCAATCAGCCTCAAAAACTTTTCCAGCGTTTATCCGA
GCAGATTCTGCTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033965XLOC_033965Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053825-exon-scaffold_234-1575043694:66564..66780TCONS_00053825-exon-scaffold_234-1575043694:66564..66780Clytia hemisphaericaexon
TCONS_00053825-exon-scaffold_234-1575043694:66353..66460TCONS_00053825-exon-scaffold_234-1575043694:66353..66460Clytia hemisphaericaexon
TCONS_00053825-exon-scaffold_234-1575043694:65518..65577TCONS_00053825-exon-scaffold_234-1575043694:65518..65577Clytia hemisphaericaexon
TCONS_00053825-exon-scaffold_234-1575043694:64937..65025TCONS_00053825-exon-scaffold_234-1575043694:64937..65025Clytia hemisphaericaexon
TCONS_00053825-exon-scaffold_234-1575043694:62918..64359TCONS_00053825-exon-scaffold_234-1575043694:62918..64359Clytia hemisphaericaexon
TCONS_00053825-exon-scaffold_234-1510915933:66564..66780TCONS_00053825-exon-scaffold_234-1510915933:66564..66780Clytia hemisphaericaexon
TCONS_00053825-exon-scaffold_234-1510915933:66353..66460TCONS_00053825-exon-scaffold_234-1510915933:66353..66460Clytia hemisphaericaexon
TCONS_00053825-exon-scaffold_234-1510915933:65518..65577TCONS_00053825-exon-scaffold_234-1510915933:65518..65577Clytia hemisphaericaexon
TCONS_00053825-exon-scaffold_234-1510915933:64937..65025TCONS_00053825-exon-scaffold_234-1510915933:64937..65025Clytia hemisphaericaexon
TCONS_00053825-exon-scaffold_234-1510915933:62918..64359TCONS_00053825-exon-scaffold_234-1510915933:62918..64359Clytia hemisphaericaexon
TCONS_00053825-exon-scaffold_234-1491911889:66564..66780TCONS_00053825-exon-scaffold_234-1491911889:66564..66780Clytia hemisphaericaexon
TCONS_00053825-exon-scaffold_234-1491911889:66353..66460TCONS_00053825-exon-scaffold_234-1491911889:66353..66460Clytia hemisphaericaexon
TCONS_00053825-exon-scaffold_234-1491911889:65518..65577TCONS_00053825-exon-scaffold_234-1491911889:65518..65577Clytia hemisphaericaexon
TCONS_00053825-exon-scaffold_234-1491911889:64937..65025TCONS_00053825-exon-scaffold_234-1491911889:64937..65025Clytia hemisphaericaexon
TCONS_00053825-exon-scaffold_234-1491911889:62918..64359TCONS_00053825-exon-scaffold_234-1491911889:62918..64359Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_234supercontigscaffold_234:62918..66780 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.34394	0.236165	0	0.211357	0.948759	0.595737	0.654373	0.441798	0.769487	0.767169	0.518987	0.574218	1.44117	0.968558	0.489202	0.426316	0.600096	0.891732	1.19714	1.19293	0.893375	1.19338	0.825008	0.327872	0.402542	0.50844	1.05373	1.58153	1.88786	1.76829
Blast
[Close]
BLAST of TCONS_00053825 vs. Swiss-Prot (Human)
Match: FARP1 (FERM, RhoGEF and pleckstrin domain-containing protein 1 OS=Homo sapiens GN=FARP1 PE=1 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 7.446e-43
Identity = 73/161 (45.34%), Postives = 117/161 (72.67%), Query Frame = 2 
Query:   35 PPNIKRPSLDADSDDEGSYTVNDMYNSLDRRHAHSRTISTRRVCWHRNTSISMKEYTLSIQNSISGELFRRYKNTSKWQKLWVVFTNFCLYFFKTGDEDAPLANLPLLGYTISRPTEAE-THEEFAFKLQFKTHQYLFKTDNEYTYERWYEVLSTATKASN 514
            PP+ K P     +D E    ++    SL+R+  H R  +   VCWHRNTS+SM +++++++N +SG L R++KN++ WQKLWVVFTNFCL+F+K+  ++ PLA+LPLLGY+++ P+E+E   +++ FKL FK+H Y F+ ++EYT+ERW EV+ +AT +++
Sbjct:  873 PPDNKSPDEATAADQESEDDLSASRTSLERQAPH-RGNTMVHVCWHRNTSVSMVDFSIAVENQLSGNLLRKFKNSNGWQKLWVVFTNFCLFFYKSHQDNHPLASLPLLGYSLTIPSESENIQKDYVFKLHFKSHVYYFRAESEYTFERWMEVIRSATSSAS 1032
The following BLAST results are available for this feature:
BLAST of TCONS_00053825 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
FARP17.446e-4345.34FERM, RhoGEF and pleckstrin domain-containing prot... [more]
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