TCONS_00053766 (transcript) - C. hemisphaerica

Overview
NameTCONS_00053766
Unique NameTCONS_00053766
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length414

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00053766 ID=TCONS_00053766|Name=TCONS_00053766|organism=Clytia hemisphaerica|type=transcript|length=414bp
ctattttaatcAAATCTTCTTGGATGAACAAATTTAAAGATATAAAGTCT
TGGATTGTTAATTGTTTCgtttgaattttagaattttcgaTTCCGAAAGC
TTTTAAACTTTGTAACCAAATTATAGTTTCATAAATTTATACAGTGAATA
TATTATGACAATTTCTATTTAAGACGACATATTGTAAATTGTATCATATT
TGCCATTTTTGCTTGCTTAAACCCTTGACTTGTAGTTCAGTATAATTATG
TATctaatagtagagggcattttataaaatcgcttgactgttttgttaga
agcacttgttatacatttttggaaagctaaggggtaggggaatcgaaatt
actatgtttccaattttttttcggacactttggtgtgattttcggacaaa
tatgacggtctcag
Run BLAST on NCBI

transcript from alignment at scaffold_233:1128539..1128952

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00053766 ID=TCONS_00053766|Name=TCONS_00053766|organism=Clytia hemisphaerica|type=transcript|length=414bp|location=Sequence derived from alignment at scaffold_233:1128539..1128952 (Clytia hemisphaerica)
ctgagaccgtcatatttgtccgaaaatcacaccaaagtgtccgaaaaaaa
attggaaacatagtaatttcgattcccctaccccttagctttccaaaaat
gtataacaagtgcttctaacaaaacagtcaagcgattttataaaatgccc
tctactattagATACATAATTATACTGAACTACAAGTCAAGGGTTTAAGC
AAGCAAAAATGGCAAATATGATACAATTTACAATATGTCGTCTTAAATAG
AAATTGTCATAATATATTCACTGTATAAATTTATGAAACTATAATTTGGT
TACAAAGTTTAAAAGCTTTCGGAAtcgaaaattctaaaattcaaacGAAA
CAATTAACAATCCAAGACTTTATATCTTTAAATTTGTTCATCCAAGAAGA
TTTgattaaaatag
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033928XLOC_033928Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053766-exon-scaffold_233-1491911889:1128539..1128952TCONS_00053766-exon-scaffold_233-1491911889:1128539..1128952Clytia hemisphaericaexon
TCONS_00053766-exon-scaffold_233-1510915933:1128539..1128952TCONS_00053766-exon-scaffold_233-1510915933:1128539..1128952Clytia hemisphaericaexon
TCONS_00053766-exon-scaffold_233-1575043694:1128539..1128952TCONS_00053766-exon-scaffold_233-1575043694:1128539..1128952Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_233supercontigscaffold_233:1128539..1128952 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.50811	2.78169	2.94202	2.35776	58.5425	32.5047	57.9632	63.089	12.52	12.3911	10.3773	8.28142	8.66693	7.61793	10.6557	11.5162	13.9154	15.4422	5.86886	10.6421	12.3566	13.5708	3.96001	10.7671	28.9706	38.3072	1.58498	5.6023	29.9913	23.4799
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00053766 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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