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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00053686 ID=TCONS_00053686|Name=TCONS_00053686|organism=Clytia hemisphaerica|type=transcript|length=27022bp protein sequence of TCONS_00053686-protein >TCONS_00053686-protein ID=TCONS_00053686-protein|Name=TCONS_00053686-protein|organism=Clytia hemisphaerica|type=polypeptide|length=2692bp MVFKLLCDIYLQQNHTQLKQLFEDNLHILLRGFKHRDQGIKQSCILVISTRun BLAST on NCBI transcript from alignment at scaffold_233:920736..954810- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00053686 ID=TCONS_00053686|Name=TCONS_00053686|organism=Clytia hemisphaerica|type=transcript|length=34075bp|location=Sequence derived from alignment at scaffold_233:920736..954810- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_233:920736..954810- >TCONS_00053686 ID=TCONS_00053686|Name=TCONS_00053686|organism=Clytia hemisphaerica|type=CDS|length=16158bp|location=Sequence derived from alignment at scaffold_233:920736..954810- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00053686 vs. Swiss-Prot (Human)
Match: MDN1 (Midasin OS=Homo sapiens GN=MDN1 PE=1 SV=2) HSP 1 Score: 147.902 bits (372), Expect = 2.520e-34 Identity = 149/612 (24.35%), Postives = 262/612 (42.81%), Query Frame = 3
Query: 4524 DFRVFATMTPPKSRVSEHLSGANITTNSELSPALYNRFNVIHMKNTLDSQTSLLNIYNTIVDEQLKGYG------DRFVELFSRIRKASKKPV---TLHHFERVLKTANKLVTLKANDVPL----RELYTGIHLHLLGMFQDEKEMYRE-----------VKSVF----PEYSCDLKKYAKHLKVVVDEEEDKGD--YVISESESPSRYEIACKLAIAISCDYPCLLEGPASCGKSSMVDYIAKSKGTTMKYINNTESTTMNDYVGSFMPGGA----YSKGPLVEAMEKGYFFLADEFDLAEPAVLNMLYPLLEGKKEITIPNSSRMITAHPNFRFIAAQN-GATYAGRKELPKSLRSRFSEIFFQEFSENEIQAIIEKKAARLFKDDEDFDVKLYSQNLARMFIKLN---LSCSKFCK----LTLRDLFKWLNRKRTF-PDAK-------MSLLGFELLYSRIQEENDKGTMAKIFSETFNDFPYSENLEFCVPKIYVGENKLQNANHVLVSEKMSKSLQISNELMDEISRSTKSFQEDLWN---------LCVALHCNEPILLIGPTS-YKSHLISTWAKMVNRNDIETALCNNSTDSADILGRLRPYSE 6179
DFR+FA M P A L P + NRF ++++ L+S+ L ++ + LKG + ++ +RK S + T H L+T + + A++ P R LY G L L + VKS+ PE + + V ++E D Y+++ S + +I + + + YP L++G S GK+S++ ++A + G INN E T + +Y+G + + + +G L++AM KGY+ + DE +LA VL L LL+ +E+ + + ++ AHP F A QN Y GRK L ++ R+RF E+ F E +E++ I+ K+ + Y L ++ + L S S F +TLRDLF+W R R P K ++ G+ LL R++++ + + ++ + F + C ++ EN L++ +L +IS +F +W + AL EP+LL+G T K+ + +A + N+ + + C+ +++D LG LRP +
Sbjct: 876 DFRLFACMNP-----------ATDVGKRNLPPGIRNRFTELYVEE-LESKEDL----QVLIVDYLKGLSVNKNTVQGIINFYTALRKESGTKLVDGTGHRPHYSLRTLCRALRFAASN-PCGNIQRSLYEGFCLGFLTQLDRASHPIVQKLICQHIVPGNVKSLLKQPIPEPKGGRLIQVEGYWIAVGDKEPTIDETYILTSSVKLNLRDI---VRVVSAGTYPVLIQGETSVGKTSLIQWLAAATGNHCVRINNHEHTDIQEYIGCYTSDSSGKLVFKEGVLIDAMRKGYWIILDELNLAPTDVLEALNRLLDDNRELLVTETQEVVKAHPRFMLFATQNPPGLYGGRKVLSRAFRNRFVELHFDELPSSELETILHKRCSL---------PPSYCSKLVKVMLDLQSYRRSSSVFAGKQGFITLRDLFRWAERYRLAEPTEKEYDWLQHLANDGYMLLAGRVRKQEEIDVIQEVLEKHFKK-------KLCPQSLFSKEN----------------VLKLLGKLSTQISTLECNFGHIVWTEGMRRLAMLVGRALEFGEPVLLVGDTGCGKTTICQVFAALANQK-LYSVSCHLHMETSDFLGGLRPVRQ 1434 HSP 2 Score: 129.798 bits (325), Expect = 8.013e-29 Identity = 142/552 (25.72%), Postives = 249/552 (45.11%), Query Frame = 3
Query: 8775 VGKTKIIKELSKALGFECERINFSANTTYEDLIGNFLPIVEEGGSKRTINFMEGRLLKALKRSETTWILLDELNLAHPSLLQKLMPLFTGAKEF--RNEATNEIIKLKRLHIFATKNPETIGGGRNKLPEAVDSCFTKIYLTQFDEKELKAIGEFKMQDAKDSGVISEANVNKILKFHTKMCQDAKL--KLYSKQEP--FNLRDLEKFILLMEKTSEFHRLGIAGTDQMFENESHTGVQDECIRTNLNLIYGKRFRKVEDQNYVQEEVDKAFPKQVASVAENCTIETELKGFS----RIGHLYINKGGYTSASSFHVSNFICQN---LLDVSAAIHTGLAILLQGGNSAGKTSLIRHLSQICQRKLIVFPATKDTTTSDLIGSWT----VNSAKKLFEKIHSSLRICSRYLLLYCITDSLDDEVLGELTELFKSNPILCTKSIDENSENVSA-IKDCVSALNALAEKLKHK-NTWLSTDFGSKIKDSVDRLNMFMNSYSQSDVH--FVFIEGPLLEAIRNGHWFLLDNIGQAPGDVLERLNSLXSWKPSGMV 10367
VGKT ++ L+KA G RIN S T DL G LP+ EGG + +G LL ALK W++LDELNLA S+L+ L F E + ++ ++ IF +NP GGGR LP + + FT++++ +++ I I + V K++ F+ ++ + + K K P FNLRDL ++ LM DQ G D ++ L+YG+R R ED+ V A K V N + T L + ++G+ +++G S H + Q+ L + + ++L G S GKTSL++ L+ + L + T++L+G + + ++L EK+ ++R R LL D+ + VL + + C + E + ++ I + + A+ L ++L +K N++ +F +K+ + + + + H F +++ L++A+++G W L+DN+ VL+RLN+L +P G++
Sbjct: 1757 VGKTSLVGALAKASGNTLVRINLSEQTDITDLFGADLPV--EGGKGGEFAWRDGPLLAALKAGH--WVVLDELNLASQSVLEGLNACFDHRGEIYVPELGMSFQVQHEKTKIFGCQNPFRQGGGRKGLPRSFLNRFTQVFVDPLTVIDMEFIASTLFP------AIEKNIVKKMVAFNNQIDHEVTVEKKWGQKGGPWEFNLRDLFRWCQLML------------VDQ------SPGCYDPG--QHVFLVYGERMRTEEDKKKV-----IAVFKDVFGSNSNPYMGTRLFRITPYDVQLGYSVLSRGSCVPHPSRHPLLLLHQSFQPLESIMKCVQMSWMVILVGPASVGKTSLVQLLAHLTGHTLKIMAMNSAMDTTELLGGFEQVDLIRPWRRLLEKVEGTVRALLRDSLLISADDA--EVVLRAWSHFLLTYKPKC---LGEGGKAITMEIVNKLEAVLLLMQRLNNKINSYCKAEF-AKLVEEFRSFGVKLTQLASGHSHGTFEWVDSMLVQALKSGDWLLMDNVNFCNPSVLDRLNALL--EPGGVL 2265 HSP 3 Score: 95.1301 bits (235), Expect = 2.366e-18 Identity = 106/421 (25.18%), Postives = 180/421 (42.76%), Query Frame = 3
Query: 5019 GDYVISESESPSRYEIACKLAIAISCDYPCLLEGPASCGKSSMVDYIAKSKGTTMKYINNTESTTMNDYVGSFMP--GG-----AYSKGPLVEAMEKGYFFLADEFDLAEPAVLNMLYPLLEGKKEITIPN-SSRMITAHPNFRFIAAQNG-ATYAGRKELPKSLRSRFSEIFF-------QEFSENEIQAIIEKKAAR---LFKDDEDFDV---KLYSQNLARMFIKLNLSCSKFCKLTLRDLFKW-----LNRKRTFPDAKMSLLGFELLYSRIQEENDKGTMAKIFSETF--NDFPYSENLEFCVPKIYVGENKLQNANHVLVSEKMSKSLQISNELMDEISRSTKSFQEDLWNLCVALHCNEPILLIGPTSY-KSHLISTWAKMVNRNDIETALCNNSTDSADILGR------LRPY 6173
DY +S + A +L A P LLEG GK+S+V +AK+ G T+ IN +E T + D G+ +P GG A+ GPL+ A++ G++ + DE +LA +VL L + + EI +P H + QN GRK LP+S +RF+++F EF + + IEK + F + D +V K + Q + LRDLF+W +++ D + F + R++ E DK + +F + F N PY F + V Q VL S+ + + + +SFQ L ++ + + ++L+GP S K+ L+ A + + ++ N++ D+ ++LG +RP+
Sbjct: 1723 ADYALSAGTTAMN---AQRLLRATKLKKPILLEGSPGVGKTSLVGALAKASGNTLVRINLSEQTDITDLFGADLPVEGGKGGEFAWRDGPLLAALKAGHWVVLDELNLASQSVLEGLNACFDHRGEIYVPELGMSFQVQHEKTKIFGCQNPFRQGGGRKGLPRSFLNRFTQVFVDPLTVIDMEFIASTLFPAIEKNIVKKMVAFNNQIDHEVTVEKKWGQK------------GGPWEFNLRDLFRWCQLMLVDQSPGCYDPGQHV--FLVYGERMRTEEDKKKVIAVFKDVFGSNSNPYMGTRLFRITPYDV-----QLGYSVL-----SRGSCVPHPSRHPLLLLHQSFQ-PLESIMKCVQMSWMVILVGPASVGKTSLVQLLAHLTG-HTLKIMAMNSAMDTTELLGGFEQVDLIRPW 2114 HSP 4 Score: 92.8189 bits (229), Expect = 1.031e-17 Identity = 55/164 (33.54%), Postives = 83/164 (50.61%), Query Frame = 3
Query: 2823 LLLEGETGVGKTAIISEAARRLGAPLIRLNLSSSTSIMSLFGSSFPTKIDGKMQVEFKEGPFTLAFKLGAWLLLDEFNLAPDNVLSSIESALD-TAVLMLPTDSIESSEQSADKKYLEIPMHQNFRLFCTQNPSTGLFK--GKRENHSSSLLSRFTPVIIAPPT 3305
+LLEG GVGKT+++ A+ G L+R+NLS T I LFG+ P + + +++GP A K G W++LDE NLA +VL + + D + +P + Q H+ ++F QNP F+ G R+ S L+RFT V + P T
Sbjct: 1749 ILLEGSPGVGKTSLVGALAKASGNTLVRINLSEQTDITDLFGADLPVEGGKGGEFAWRDGPLLAALKAGHWVVLDELNLASQSVLEGLNACFDHRGEIYVPELGMSFQVQ-----------HEKTKIFGCQNP----FRQGGGRKGLPRSFLNRFTQVFVDPLT 1897 HSP 5 Score: 91.2781 bits (225), Expect = 3.083e-17 Identity = 81/290 (27.93%), Postives = 138/290 (47.59%), Query Frame = 3
Query: 2763 TETMKKNL-DLIMSVVENPLNLLLEGETGVGKTAIISEAARRLGAPLIRLNLSSSTSIMSLFGSSFPTKIDGKMQVEFKEGPFTLAFKLGAWLLLDEFNLAPDNVLSSIESALDTAVLMLPTDSIESSEQSADKKYLEIPMHQNFRLFCTQNPSTGLFKGKRENHSSSLLSRFTPVIIAPPTKEEIKQILLHTLHQKEYSIDHSIIAAKINDLHADVSTEMRDTDEADCAYAKTTIRDAVKLANKASRILEMCNEKHSEDVMSMIGYAAFSVYASRLRHKDNRDMIKGII 3629
T ++K NL D++ V +L++GET VGKT++I A G +R+N T I G + + GK+ FKEG A + G W++LDE NLAP +VL ++ LD +L T++ E + H F LF TQNP GL+ G R+ S + +RF + +E+ L T+ K S+ S +K+ + D+ + R + T+RD + A + R+ E +++ D + + + + A R+R ++ D+I+ ++
Sbjct: 1059 TSSVKLNLRDIVRVVSAGTYPVLIQGETSVGKTSLIQWLAAATGNHCVRINNHEHTDIQEYIGC-YTSDSSGKLV--FKEGVLIDAMRKGYWIILDELNLAPTDVLEALNRLLDDNRELLVTETQEV-----------VKAHPRFMLFATQNPP-GLY-GGRKVLSRAFRNRFVELHF-----DELPSSELETILHKRCSLPPS-YCSKLVKVMLDLQSYRRSSSVFAGKQGFITLRDLFRWAERY-RLAEPTEKEY--DWLQHLANDGYMLLAGRVRKQEEIDVIQEVL 1323 The following BLAST results are available for this feature:
BLAST of TCONS_00053686 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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