TCONS_00053476 (transcript) - C. hemisphaerica

Overview
NameTCONS_00053476
Unique NameTCONS_00053476
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1160

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00053476 ID=TCONS_00053476|Name=TCONS_00053476|organism=Clytia hemisphaerica|type=transcript|length=1160bp
ATagcttgtttttcttttaggtataaaaaatgaattttccaTATAAAATA
TTACTAGTATGCTTTATCATTGGACTTTTCACAATAAACACATGTTATTC
GCAAGACGATGGAGCAGGCAATCCCAATGATTCGAAATATGATAAACAAA
ATGGTAATCAAAACTCTGTAAGTAAGGATCAGGCTAAAGATGATTCTTTT
GCTAATAAAAAGACAGATGTGGCAAGTGGAGACTCTTCAAAAGTTGAAGG
GGATGTTCCtgtttttgttaaaaataacACAACAATAGCCCCagttgaaa
aagcagaaaaaaagaCCACAACAAAGACAGCTGCTCCTTTAGCTGCTACA
ATAACTACAACTCAAAAGACTCCTGGtccaacaaccacaacaacagTTGA
AGCTAATCAGGTCATAGCTGACCCAACTACAACaactacaacaactaCAA
CTCAAAAGACTCCtggttcaacaacaacaacaacaaccactccAACCACA
ACCACCCTCACTCCAACCACAACCACTACCTCTACCCCATCCCCATTCGA
AGAAACAAACCAATATTCTGAGAATATTTACAAGAATATGAATACAAAAG
GAGAACCAGATACTGGAGGAGGTTTTCCGATATTTTTGATGGTGGCAGTT
GTATTTGTTGTTGTGGCTTACTTTGTTTATCATAATAGAGGAAAGGTGAT
GGGTTATCTGGTTGAAGGTAAGAATGGTGGTAGTACTGGGAATAGAAGAG
CACCTGGTTATCGGAGGCTGAAGAACTTGGAAGAAGCAATGCCAGGAGTA
AGAAaTCACAATGCTTGACAAAAACAAAGGTGTTTGATAGGTACATTTTA
GCAGTATTGTCTTTTAAGTAATTATAATATAAGTTGAAAGAGTACATATT
GTGTTTGCATTGAATTTTATACCTTTTCGACCGCGGAGCGGTGTATTCAG
AGACGTTTTGTATGGTGAAAAATCTCGCATATTTGCGCGCGGTAATCCGT
TCTCTAAAGTCACGGNAACCGACGTGCCGACGTGCTTACGTGCTTGCGTG
cccaaagttttgacgtgccctcgaattttgacgtgccctccaatttcgac
gtgccctaaaatttcggcgtgccctcaaatttcgacgtgccctcaaattt
taacgtgccc
Run BLAST on NCBI

transcript from alignment at scaffold_231:282117..286409-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00053476 ID=TCONS_00053476|Name=TCONS_00053476|organism=Clytia hemisphaerica|type=transcript|length=4293bp|location=Sequence derived from alignment at scaffold_231:282117..286409- (Clytia hemisphaerica)
ATAGCTTGTTTTTCTTTTAGGTATAAAAAATGAATTTTCCATATAAAATA
TTACTAGTATGCTTTATCATTGGACTTTTCACAATAAACACATGTTATTC
GCAAGACGATGGAGCAGGCAATCCCAATGATTCGAAATATGATAAACAAA
ATGGTAATCAAAACTCTGTAAGTAAGGATCAGGCTAAAGATGATTCTTTT
GCTAATAAAAAGACAGATGTGGCAAGTGGAGACTCTTCAAAAGTTGAAGG
GGATGTTCCTGTTTTTGTTAAAAATAACACAACAATAGCCCCAGTTGAAA
AAGCAGAAAAAAAGACCACAACAAAGACAGCTGCTCCTTTAGCTGCTACA
ATAACTACAACTCAAAAGACTCCTGGTCCAACAACCACAACAACAGTTGA
AGCTAATCAGGTCATAGCTGACCCAACTACAACATCTACAACTCAAAAGG
CTCCTGGTCCAACAACCACAACAACAGTTAAAACTAACCAGGCCTTAGCT
GACCCAACTACAACAACTACATCTACAACAACTCAAAAGGCTCCTGGTCC
AACAACCACAACAACAGTTAAAACTAATCAGGCCTTAGCTGACCCAACTA
CAACAACTACAACTACAACAACTCAAAAGACTCCTGGTCCAACAACAACA
ACAACAACAATTAAAACTACTCAGATCATAACTGACCCAACTACAACAAC
TACAACTCAAATGGCTCCTGGTCCAACAACCACAACAACTACAACAACTA
CAACTCAAAAGACTCCTGGTTCAACAACAACAACAACAACCACTCCAACC
ACAACCACCCTCACTCCAACCACAACCACTACCTCTACCCCATCCCCATT
CGAAGAAACAAACCAATATTCTGAGAGTAAGCTAAAGTTATTCAATTATT
TTTGCTTGAAGGGAAAGTGACTATTATGGAAAATTGACAATTTGTATACA
TTTTATGCTTTCTGTTAAAATAAAGAATAGAGGAGGTCACTTAAAAATGT
TACTTAAAGAGTTGCTTATGTTTTGTCTTTAAAACCAATGATTTTTTTGT
ATAGCCAACCTAGCATTTAGTATTTTCAACACAGAATGGCTTCTTTTTTT
TTCAAAAACACAGACCTGTTAGTGTAAATAAACATGGTGTAACTTTCGAA
TTTACATAAAACCATTGCTCTCATAACATCATTACATTTTACATTTGTTT
CTTTTGTAGATATTTACAAGAATATGAATACAAAAGGGTAAGCTTTAAAA
ATTATTGATTGAATTTAATATCCTGATTCTCCATTAGCAGCTTTTAAAAT
TCTTTAAACGAGCCATTTATCAGTAATGACAACAATATCCTCAATAACCT
AGTTATCATTTCCATTAAAGATGCCATGACATGAGCTTTTGTAGGTTTAT
CAGCCCTGATCCGTTTATTCTTAATCAGTCTTATAAATAGGACTGTTTTT
TTTTTGTCAATATAAACCATCCATTGAAATTGCTTTTTTCAGAGAACCAG
ATACTGGAGGAGGTTTTCCGATATTTTTGATGGTGGCAGTTGTATTTGTT
GTTGTGGCTTACTTTGTTTATCATAATAGAGGAAAGGTATGTGATTTTGA
ATTCCAATTGCTTTCATTTTTAGCTTTGATCAAATCCATTATCAATAAAA
CAGCATACTTGGTTATCAACGCTTGATCAGGGCCACTATCAAATCAAATG
TACAAGTGCACCGGCCCCAAAAGGGATCAAAAATAATTAATTTTCATTAT
AACTTTTTTTCCGGATGTTGGGCCAAGCTGAAAAATTAAAACGGCATGGG
AAATACTACGAGAAATAACATTATGCTCGGAAAGAACACAACAGCAGTAA
ATTGACCATGTTATGTCTAATTTGTTGTCCTTGCAAAAAAGTGGAAGTGG
ACCATAAGCAATATAAGCAATTAAACTCGACAAAAGGTTTAGAACCATTC
GTGAGAGGTCAGTCTAGCTAGTTGGTATATGGTTGGCTTTATCGTCCAGG
AATGGACATGGATTTATCGGACAATATTCTCAATACTATAGACCACTTTT
TTCAACTAAATAGCATTATATTTTTACCCTGGCCTCTTTCCATTGAGAAT
TTGAAATCAGAAACTTTTACTCTCTTTTACTTGGTCAAATAATAGACATG
TTGTCTTTACTTTTTGTGTTACCGGACAATTTATTGTCATTTTAAGAACT
CTTTTAAACTTGTTTCTTACCTTGCTTGACATTTTTATTAAATTTCAGCT
TGCGTNGACTCTTTTAAACCTGTTTCTTACCTTGCTGGACATTTTTATAA
AATTTCAACTTGCATAAGCAAAGCAGTCAAGAGTTAATGACCATAAGACA
ATTTCTAATTCTATGCTTTCGGGCAATTCTGTCCCAATTTGGACCACACT
TTAAATTAAATTAAATTAAATATTCTATCCCAATACCATCAGACCATGAT
AAGCTAGATTAACAGGACCTTTTATCTTACCGACAAACAATATTGGAAGT
CAATAGACATATATTTTTAAAAAGATTCAGCTCAAAATATAACCATATGA
CTAAAAAGGTACAAAAATGGCCATTTCTTGTACATTCGATTTGACAAGAT
CAAGCAATATTTTTCATTTAGGACGCCTTGTGTTCTGCTGATTAGATTTT
CTTTGCAAATAATCCTTTTTAAGATGTCAACAGGACCTTGAGCAACCTGT
AAAACTAACCCTCCAACCTTGAAAACCTTGATATTTATATAATTTTTGAA
AAAAACAATGAATTACAAATTACTGAATTAGGTACTGTCTTATCTAATCG
ATTTTTTTTTTGCTCACTTTGCTTGCAATCATTTTGAAAAACTTTTTGTG
ATGAGAAAGCTGCATTTAGTCTTAAACAGGCCATGCTGAAGGATATGTTT
ACTATTCAAATCAATTTGAAAATTAAAAATCTTGAAAAAGACAAGTTATA
GTCAATTAAGAACCTTGAATATCCGCTAAAATTTGGTAAATATGGAGAAG
AAGCTCCCTAGATATCCTAGATACCCTAAAATTTCTTTCTCTCTTTCATT
TCCCATTGAGAAGCATTGGCTATTATGAAGTTATTTGAATCAAGGATTAA
TTTTCAGGTGATGGGTTATCTGGTTGAAGGTAAGAATGGTGGTAGTACTG
GGAATAGAAGAGCACCTGGTTATCGGAGGCTGAAGAACTTGGAAGAAGCA
ATGCCAGGAGTAAGAAGTAAGAATATTGTGCTGTTCTTTTAATTGACTAC
TATAAAATGAACAGGTGAACCTTTGTTGTATGAATGTGTGAAGTTTTTGT
TACATTAAGGGGTCATTCCAAGAAATTTTCAACACGATTGGAGATCTATG
TCTATAGAAGTTTTTGTTACATTAAGGGGTCATTCCAAGAAATTTTCAAC
ACGATTGCAGATCTATGTCTATGGAAGTTTTTGTTACATTAAGGGGTCAT
TCCAAGAAATTTTCAACACGATTGCAGATCTATGTCTATGGAAGTTTTTG
TTACATTAAGGGGTCATTCCAAGAAATTTTCAACACGATTGCAGATCTAT
GTCTATGGAAGTTTTTGTTACATTAAGGGGTCATTCCAAGAAATTTTCAA
CACGATTGCAGATCTATGTCTATGGAAGTTTTTGTTACATTAAGGGGTCA
TTCCAAGAAATTTTCAACACGATTGCAGATCTATGTCTATGGAAGTTTTT
GTTACATTAAGGGGTCATTCCAAGAAATTTTCAACATGATTGCAGATCTA
TGTCTATGCCCGATTGAACCATTGGGGTGTTATTAAATGGTGTATGGGTT
GCGATCCTCCTAGGTCCCTACTTGCGGAATTAGGTCAAAAAAGATTGTGA
CAAAACGTACCCCTCCTCAGGAATGACCGTAAGTTTTGTTTATATTTCAC
GATTTCACTACTAAACGAAAATTTATTTTACTTTTAGATCACAATGCTTG
ACAAAAACAAAGGTGTTTGATAGGTACATTTTAGCAGTATTGTCTTTTAA
GTAATTATAATATAAGTTGAAAGAGTACATATTGTGTTTGCATTGAATTT
TATACCTTTTCGACCGCGGAGCGGTGTATTCAGAGACGTTTTGTATGGTG
AAAAATCTCGCATATTTGCGCGCGGTAATCCGTTCTCTAAAGTCACGGNA
ACCGACGTGCCGACGTGCTTACGTGCTTGCGTGCCCAAAGTTTTGACGTG
CCCTCGAATTTTGACGTGCCCTCCAATTTCGACGTGCCCTAAAATTTCGG
CGTGCCCTCAAATTTCGACGTGCCCTCAAATTTTAACGTGCCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033754XLOC_033754Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053476-exon-scaffold_231-1575043694:285977..286409TCONS_00053476-exon-scaffold_231-1575043694:285977..286409Clytia hemisphaericaexon
TCONS_00053476-exon-scaffold_231-1575043694:285534..285673TCONS_00053476-exon-scaffold_231-1575043694:285534..285673Clytia hemisphaericaexon
TCONS_00053476-exon-scaffold_231-1575043694:285173..285200TCONS_00053476-exon-scaffold_231-1575043694:285173..285200Clytia hemisphaericaexon
TCONS_00053476-exon-scaffold_231-1575043694:284824..284917TCONS_00053476-exon-scaffold_231-1575043694:284824..284917Clytia hemisphaericaexon
TCONS_00053476-exon-scaffold_231-1575043694:283194..283302TCONS_00053476-exon-scaffold_231-1575043694:283194..283302Clytia hemisphaericaexon
TCONS_00053476-exon-scaffold_231-1575043694:282117..282472TCONS_00053476-exon-scaffold_231-1575043694:282117..282472Clytia hemisphaericaexon
TCONS_00053476-exon-scaffold_231-1510915933:285977..286409TCONS_00053476-exon-scaffold_231-1510915933:285977..286409Clytia hemisphaericaexon
TCONS_00053476-exon-scaffold_231-1510915933:285534..285673TCONS_00053476-exon-scaffold_231-1510915933:285534..285673Clytia hemisphaericaexon
TCONS_00053476-exon-scaffold_231-1510915933:285173..285200TCONS_00053476-exon-scaffold_231-1510915933:285173..285200Clytia hemisphaericaexon
TCONS_00053476-exon-scaffold_231-1510915933:284824..284917TCONS_00053476-exon-scaffold_231-1510915933:284824..284917Clytia hemisphaericaexon
TCONS_00053476-exon-scaffold_231-1510915933:283194..283302TCONS_00053476-exon-scaffold_231-1510915933:283194..283302Clytia hemisphaericaexon
TCONS_00053476-exon-scaffold_231-1510915933:282117..282472TCONS_00053476-exon-scaffold_231-1510915933:282117..282472Clytia hemisphaericaexon
TCONS_00053476-exon-scaffold_231-1491911889:285977..286409TCONS_00053476-exon-scaffold_231-1491911889:285977..286409Clytia hemisphaericaexon
TCONS_00053476-exon-scaffold_231-1491911889:285534..285673TCONS_00053476-exon-scaffold_231-1491911889:285534..285673Clytia hemisphaericaexon
TCONS_00053476-exon-scaffold_231-1491911889:285173..285200TCONS_00053476-exon-scaffold_231-1491911889:285173..285200Clytia hemisphaericaexon
TCONS_00053476-exon-scaffold_231-1491911889:284824..284917TCONS_00053476-exon-scaffold_231-1491911889:284824..284917Clytia hemisphaericaexon
TCONS_00053476-exon-scaffold_231-1491911889:283194..283302TCONS_00053476-exon-scaffold_231-1491911889:283194..283302Clytia hemisphaericaexon
TCONS_00053476-exon-scaffold_231-1491911889:282117..282472TCONS_00053476-exon-scaffold_231-1491911889:282117..282472Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_231supercontigscaffold_231:282117..286409 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
18.2259	19.2016	16.9922	20.6478	1.70939	1.52057	4.51434	5.09499	6.18748	6.35723	7.07401	6.33542	4.02667	5.3977	6.07072	6.7454	6.63373	9.45097	11.6427	12.4153	6.51681	9.37553	11.0014	10.7132	5.3168	6.11999	17.2924	8.13212	11.6666	12.5023
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00053476 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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