TCONS_00053422 (transcript) - C. hemisphaerica

Overview
NameTCONS_00053422
Unique NameTCONS_00053422
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length241

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00053422 ID=TCONS_00053422|Name=TCONS_00053422|organism=Clytia hemisphaerica|type=transcript|length=241bp
ATGTGAAACTTAACTTAGTTCAAAGCGTATGCAAGAGCGAGGATTGACAA
GCTGACAAGCAGCTTCTTTAAAGCATATTGCGCATGCGCAGTTTGTTCCA
GTCTGCGCAAGATGGTAGAATTTCGTACGAAAAACGCGGAGAAGCTCGAT
TTCCACCTTTCTTCGATCGTCGGAAATCACACTTCTCAGCTATTTTCTCT
TCTCAAATCTCAAACAATAATAGACACATAACGCATAGTTT
Run BLAST on NCBI

transcript from alignment at scaffold_230:66198..66438

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00053422 ID=TCONS_00053422|Name=TCONS_00053422|organism=Clytia hemisphaerica|type=transcript|length=241bp|location=Sequence derived from alignment at scaffold_230:66198..66438 (Clytia hemisphaerica)
AAACTATGCGTTATGTGTCTATTATTGTTTGAGATTTGAGAAGAGAAAAT
AGCTGAGAAGTGTGATTTCCGACGATCGAAGAAAGGTGGAAATCGAGCTT
CTCCGCGTTTTTCGTACGAAATTCTACCATCTTGCGCAGACTGGAACAAA
CTGCGCATGCGCAATATGCTTTAAAGAAGCTGCTTGTCAGCTTGTCAATC
CTCGCTCTTGCATACGCTTTGAACTAAGTTAAGTTTCACAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033729XLOC_033729Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053422-exon-scaffold_230-1491911889:66198..66438TCONS_00053422-exon-scaffold_230-1491911889:66198..66438Clytia hemisphaericaexon
TCONS_00053422-exon-scaffold_230-1510915933:66198..66438TCONS_00053422-exon-scaffold_230-1510915933:66198..66438Clytia hemisphaericaexon
TCONS_00053422-exon-scaffold_230-1575043694:66198..66438TCONS_00053422-exon-scaffold_230-1575043694:66198..66438Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_230supercontigscaffold_230:66198..66438 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
6.9109	6.80987	8.91563	10.4534	2.28548	2.79565	0.285988	2.03467	0.745854	0.92386	0	0.589469	0	1.10862	2.96213	0.487903	3.23444	0	0.987439	1.96912	0.647247	0	1.01483	2.76789	0	0	1.21364	2.384	3.92955	2.0018
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00053422 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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