TCONS_00053315 (transcript) - C. hemisphaerica

Overview
NameTCONS_00053315
Unique NameTCONS_00053315
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length606

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00053315 ID=TCONS_00053315|Name=TCONS_00053315|organism=Clytia hemisphaerica|type=transcript|length=606bp
TGTCGATCGAAATGGTGTGGAATTAACCGTCACTCCATCAAAGTTTGAAC
AATTAAAGAAGTGTGGCTTGCTTCCAGCCAACGCAGGTCAACCATCAAAA
GTTAAGTCAAACTTAGCAAAAAACAgccatcataaaaaagttacCGAAAA
GTTGGCACCCAAAATGGTTACTTTTGTCGATCGAAATGGCGTGGAATTAA
CACTCACTCTATCAAAGTTTGAACAATTAAAAAAGTGTGGATTGCTTCCA
GCCAACGCAGGTCAACCATCAAAAGTTAAGTCAAACTTAGCTAAAAACAg
ccatcataaaaaagttacCGAAAAGTTGGCGCCCAAAATGGTCACAGAAA
ACAAGAGCGAAGATGAACAAAGCCTTGGCATATCAAAAGAACGTTTAGCC
TTCGCACAACAACTCATTAAGGAAGCCCAAGAGGCTCCGTTGCCCGAAGA
TGACGGTCGATGGTGAACTCTTCTCCGCATCAAAAACATAAATAATAAAC
AACCAAAACCTACAAACTCCtgaaattattttgcattcAATGTAAATATA
AATCTGTATAATTAAATTACATTGTGTATCATTTCAATTTCCACTCAATC
TTTCAG
Run BLAST on NCBI

protein sequence of TCONS_00053315-protein

>TCONS_00053315-protein ID=TCONS_00053315-protein|Name=TCONS_00053315-protein|organism=Clytia hemisphaerica|type=polypeptide|length=154bp
VDRNGVELTVTPSKFEQLKKCGLLPANAGQPSKVKSNLAKNSHHKKVTEK
LAPKMVTFVDRNGVELTLTLSKFEQLKKCGLLPANAGQPSKVKSNLAKNS
HHKKVTEKLAPKMVTENKSEDEQSLGISKERLAFAQQLIKEAQEAPLPED
DGRW
Run BLAST on NCBI

transcript from alignment at scaffold_228:745899..746678+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00053315 ID=TCONS_00053315|Name=TCONS_00053315|organism=Clytia hemisphaerica|type=transcript|length=780bp|location=Sequence derived from alignment at scaffold_228:745899..746678+ (Clytia hemisphaerica)
TGTCGATCGAAATGGTGTGGAATTAACCGTCACTCCATCAAAGTTTGAAC
AATTAAAGAAGTGTGGCTTGCTTCCAGCCAACGCAGGTCAACCATCAAAA
GTTAAGTCAAACTTAGCAAAAAACAgccatcataaaaaagttacCGAAAA
GTTGGCACCCAAAATGGTTACTTTTGTCGATCGAAATGGCGTGGAATTAA
CACTCACTCTATCAAAGTTTGAACAATTAAAAAAGTGTGGATTGCTTCCA
GCCAACGCAGGTCAACCATCAAAAGTTGAATTAAACTTAGCTAAAAACAg
ccatcataaaaaagttagCGAAAAGTTGGCGCCCAAAATGGTTACTTTTG
TCGATCGAAATGGCGTGGAACTAACCGTCACTCCATCAAAGTTTGAACAA
TTAAAAAAGTGTGGATTGCTTCCAGCCAACGCAGGTCAACCATCAAAAGT
TAAGTCAAACTTAGCTAAAAACAgccatcataaaaaagttacCGAAAAGT
TGGCGCCCAAAATGGTCACAGAAAACAAGAGCGAAGATGAACAAAGCCTT
GGCATATCAAAAGAACGTTTAGCCTTCGCACAACAACTCATTAAGGAAGC
CCAAGAGGCTCCGTTGCCCGAAGATGACGGTCGATGGTGAACTCTTCTCC
GCATCAAAAACATAAATAATAAACAACCAAAACCTACAAACTCCtgaaat
tattttgcattcAATGTAAATATAAATCTGTATAATTAAATTACATTGTG
TATCATTTCAATTTCCACTCAATCTTTCAG

Coding sequence (CDS) from alignment at scaffold_228:745899..746678+

>TCONS_00053315 ID=TCONS_00053315|Name=TCONS_00053315|organism=Clytia hemisphaerica|type=CDS|length=930bp|location=Sequence derived from alignment at scaffold_228:745899..746678+ (Clytia hemisphaerica)
GTCGATCGAAATGGTGTGGAATTAACCGTCACTCCATCAAAGTTTGAACA
ATTAAAGAAGTGTGGCTTGCTTCCAGCCAACGCAGGTCAACCATCAAAAG
TTAAGTCAAACTTAGCAAAAAACAgccatcataaaaaagttacCGAAAAG
TTGGCACCCAAAATGGTTACTTTTGTCGATCGAAATGGCGTGGAATTAAC
ACTCACTCTATCAAAGTTTGAACAATTAAAAAAGTGTGGATTGCTTCCAG
CCAACGCAGGTCAACCATCAAAAGTTAAGTCAAACTTAGCTAAAAACAgc
catcataaaaaagttacCGAAAAGTTGGCGCCCAAAATGGTCACAGAAAA
CAAGAGCGAAGATGAACAAAGCCTTGGCATATCAAAAGAACGTTTAGCCT
TCGCACAACAACTCATTAAGGAAGCCCAAGAGGCTCCGTTGCCCGAAGAT
GACGGTCGATGGTGAGTCGATCGAAATGGTGTGGAATTAACCGTCACTCC
ATCAAAGTTTGAACAATTAAAGAAGTGTGGCTTGCTTCCAGCCAACGCAG
GTCAACCATCAAAAGTTAAGTCAAACTTAGCAAAAAACAgccatcataaa
aaagttacCGAAAAGTTGGCACCCAAAATGGTTACTTTTGTCGATCGAAA
TGGCGTGGAATTAACACTCACTCTATCAAAGTTTGAACAATTAAAAAAGT
GTGGATTGCTTCCAGCCAACGCAGGTCAACCATCAAAAGTTAAGTCAAAC
TTAGCTAAAAACAgccatcataaaaaagttacCGAAAAGTTGGCGCCCAA
AATGGTCACAGAAAACAAGAGCGAAGATGAACAAAGCCTTGGCATATCAA
AAGAACGTTTAGCCTTCGCACAACAACTCATTAAGGAAGCCCAAGAGGCT
CCGTTGCCCGAAGATGACGGTCGATGGTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033650XLOC_033650Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053315-proteinTCONS_00053315-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053315-exon-scaffold_228-1491911889:745899..746158TCONS_00053315-exon-scaffold_228-1491911889:745899..746158Clytia hemisphaericaexon
TCONS_00053315-exon-scaffold_228-1510915933:745899..746158TCONS_00053315-exon-scaffold_228-1510915933:745899..746158Clytia hemisphaericaexon
TCONS_00053315-exon-scaffold_228-1575043694:745899..746158TCONS_00053315-exon-scaffold_228-1575043694:745899..746158Clytia hemisphaericaexon
TCONS_00053315-exon-scaffold_228-1491911889:746333..746678TCONS_00053315-exon-scaffold_228-1491911889:746333..746678Clytia hemisphaericaexon
TCONS_00053315-exon-scaffold_228-1510915933:746333..746678TCONS_00053315-exon-scaffold_228-1510915933:746333..746678Clytia hemisphaericaexon
TCONS_00053315-exon-scaffold_228-1575043694:746333..746678TCONS_00053315-exon-scaffold_228-1575043694:746333..746678Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_228supercontigscaffold_228:745899..746678 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.138758	0	0.593952	0.400399	0	0.114892	0	0.150612	0	0	0	0	0	0.0507442	0	0.201257	0.206282	0	0	0	3.1861e-07	0.153306	0	0	0	0.122537	0	0	8.1607e-07
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00053315 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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