TCONS_00053311 (transcript) - C. hemisphaerica

Overview
NameTCONS_00053311
Unique NameTCONS_00053311
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3399

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00053311 ID=TCONS_00053311|Name=TCONS_00053311|organism=Clytia hemisphaerica|type=transcript|length=3399bp
TTTGTAACCTGATTAGGgtaaaacaagcaagcaaacaTCACCAGAAAGGT
AACAAAAAGTTTCCGAGAAACTCGTTCATGAACTCGATGACCCCTATTGT
TACGGACGTTAAATGCACAGAGTTTAATTCGAAATTCGAGTCATAAAGTT
TTCTATTTATATTTGACTGTCAACCGTTGATCTTGTGTGTGTTAGCGTCA
AACATTCAGTTAAGAAACCAAAAACCGTTCACAAGCAAAAAGGAATCTTT
AGTGTTGAAGGGAAATCATGGAGCTTAAACTACCTTGGCTTTTAgtggtt
tgttttggttgtttGTCTGTTTATAATTTCTTGCGTGATTTAGAAGCAGA
TTCGAGATTCATTAGCCTGGAAGAAAAATCAGCAGaCCACCATGGCAGAC
ACCGAAGAGACACCGGAACAGAAAATTGGCAAAACATCTTAAACCTGGAT
ACATTAAAGGAATTCGTTCAAAAGCATTCCAACGAAACATTTCAAAGGGA
AATTACACACGTGTTGGGGCAATTGATGTTGAATTTCCCTGCAGATAAAC
TCTGCAAAAATTTTATGATCCGATGTGGAAAAGAGAAATGTACAGAGGAA
AAGGTTGTGATTGCTGGAGATCAAGAGATTGGGAACAAGGGAAAAACAAA
ATGTATTCGTGGTCCACCTGGTCCACAAGGTCCACCTGGTCCACGAGGAC
CtaaagggtcgaaagggttagGATTAGAACCACCAAAATTGGTTCAAAAT
TCACTAGGTGATCGTGTAGTTAATTTGACAGATTCGACAACTTTTGAATG
TACATTTTTTGGCAATCCAATACCAACAATATCATGGAGAAGCGTCGCCA
ATAATGGTCGAGTCAGTTCTACTGTTGACAAAGAAAAATCAGAGATCACA
ACCCAATTGACCCTTAAGAATATTTCATGGAATGATCAAGGACCTGTTGA
ATGTCGTGCGAAGAGCTTACTTGGAGAAGATTATGGCTCAGGAAATCTTT
CTACGTTGTCGGAACCAGTGATCCACATGACAGAAACTTTGGTTTTCGCA
CCAAACGGAGTTAATTTCCAGCTACCAGAATGCAAAGTTCGTTCAAATCC
AACTGCTACAGTTACATGGAAAAGGATCTTCTGGTCGATGCCTGTCGGTC
GTTTTAATGTTCAAGAAAACAAGTTGATGATCAATAATGTGCGCTATTCA
GATGAAGGATTTTATGTCTGTGAAGCTGAAAATTATCTAGGTAAAGACAA
AAAGACAGTACAACTGAAAGTCAAAGCATTTGAAATGTATCACTCCTCGC
CATCATACATTGCTTCCATGACAACTGACACAACAAACGTTACTTGTTCC
GCATACGGAAACACCAAAGAAATGACCGGTACAATCAGTAAATCTGGACG
AAATATACCGGTTGTGATTGAAAAGCGGGAAGATAACTTGTTTGTGGTAG
CAGCAGAAGTTTCAGAGGATGGGACTTATGTTTGTACTATAAAGtatgat
aaagaaaaagttgaGAGCGCTTCAGTTGTGGAATTCTTTACGCTCCAATC
GAAAATCTTGAACAGCACTCAAATCGAAACCATTCGAAGTTGGTTAGATG
AAGCCGGTAAACTTGGCAAATATGAGCCATGCTTCACCTTGTCTACACCT
TCAACCAACTTCTATCAACCTTCTTACTGCGGAGACAAATCAAATACTAT
TTCATTGATGCAAGTTAAAGACAAGCTCAGATACGGACGGGATCGTTACG
GCAGATATAGATACGATTGGGGGAGTATTTATGGCGGATTCACTGACATC
CCATGGAATAgATATTCATCAAGAGCCAGTAACTCAACATTCATCTTTGA
CCTCAATCAAATGGAGAAATATCCTCTCCGCGATACAGCTTATGCAAGAT
CAAACGCCGTTTGTTATTACAATGGATATGGGCCTTGTTTTGGTTCGACG
GATCTCTACGTGCGTTCAGGGTCATTGGGAAATAAAGGCAGATGGGTATT
CCAAGACGTCCCAAGTATTCAGACCAGCCGTGAAGTCAGAATGGAGGTCT
TTTACAAAGTTTAAACTAACAACAAGATTCTTTTTATATGTACTTTTTTA
GCAGGATTTcagtttattttcattgtcCATTGATGTtctcaatttttatt
ttgttaattttataagctaatcttaaaaataatttcttttgaaaaaaaaa
tataagccTTGACAATAATGAAACGTATTAAGGGATTTGACAACAAATCA
TACTTACATTCGATCCTTTTGTCTCTGGACTCTCAAAGGATAGTTTCTTA
TGCTTCAACTATTTGTCACTGTACTGTAGATATCTCAAGAATCGAAGTTT
GAAGACCATAATCAGAACAATTTCTACAATAGTGTATACTTTTACCATCT
AAGATATCACATCAAAGTCTAAATCTCTCAACGTTCTCAACGTttttata
tcaaagtctcatGTCACTTGATATAAACCCATGAGTATCTTTCTTCCAAT
TAACAAAGTCCCCATAATTTATCTCGATCGTAATCCGTAGTTGCTGAACA
CCAcataaattgttttttgaatttctctgTCCCCTTCGTTGTACAGGAGC
GATATTCTTTACCTTTGTAAAGGAACGGAAATTTGCAGCAAGCACCGTCA
GCTGTACCCCCATGTGACAGATGCAAACATTCGTCGTCTAAAATTCAATA
TAGCGTTACTATATAAGGTTTATGCAAAAAGCTTCCAAAGCTTGTCTGCT
CTGACTGACGGCCAGGGAAACTTCATATGTAACTACTGTTTTTCCTTGAC
ACTGAATGCTAAGCAGGTAAGCCGTACGCGCATCGAGTTGTGAACCAAAC
TTAGAGGTTGAATCCTAAACTTGCAAACGAGGCTGGACTCTAAATCTTCT
AGGTAGGCCACCACATTAAATAAGAAATCAGAGACGATTGAAGCTTTTTG
ATCAAAGTGAATTTTTACCTTAAAGATTCAATTAATTGAAAGaaagaata
tcaaaatgttTTATGAGATGAAAACTCACACAAACTAAATAATACTACTG
GAGAACAGTCGTTCACAGAAAATACATACCTAATTTACAGCTTTGTACAT
CGATTCGTTTCTGCGAAATAAAGTTGATTTTACAAATGACGACATTATTT
AGATAATCACTTTCCAACGCTTTCCGTAACGGATTTACGATAACACGTAA
CGTATACAATCCATACTCGAGATCTGTAACATCGATCCATTGACAATCAA
TATTGAATTTATAATTATCAGCACATCCAACACTTATTCCTTGGTCACCC
TTCCCAGTACAATTGTAACGTTTTGAAACACTGTGATCACACATGCTATC
TTCTAAACAAAAACTTGCTTTTTGACCATCAGATCGTTTGCGTCCTTTA
Run BLAST on NCBI

transcript from alignment at scaffold_228:596314..605369+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00053311 ID=TCONS_00053311|Name=TCONS_00053311|organism=Clytia hemisphaerica|type=transcript|length=9056bp|location=Sequence derived from alignment at scaffold_228:596314..605369+ (Clytia hemisphaerica)
TTTGTAACCTGATTAGGgtaaaacaagcaagcaaacaTCACCAGAAAGGT
AACAAAAAGTTTCCGAGAAACTCGTTCATGAACTCGATGACCCCTATTGT
TACGGACGTTAAATGCACAGAGTTTAATTCGAAATTCGAGTCATAAAGTT
TTCTATTTATATTTGACTGTCAACCGTTGATCTTGTGTGTGTTAGCGTCA
AACATTCAGTTAAGAAACCAAAAACCGTTCACAAGCAAAAAGGAATCTTT
AGTGTTGAAGGGAAATCATGGAGCTTAAACTACCTTGGCTTTTAgtggtt
tgttttggttgtttGTCTGTTTATAATTTCTTGCGTGATTTAGAAGCAGA
TTCGAGATTCATTAGCCTGGAAGAAAAATCAGCAGGTAAGACTTTGATAA
ACTTGTGCCTGAAAATAGATCCATTGATATAAGGGAgtggtcataaagta
tctactagggggattgtttttcccacccttagcaAGGAGGGGGTCTATAT
TAGAATAAGGGGTGTCAAAAATATATCAACTGGTTAGGGAgacttgagaa
attttttcgagGATATCAAGGGGGTGCGAACTTTTTGTGGAATTTTTNGG
GGGGGGGGGTGTCATAactttttccaacccttagcaAGAAGGGGGTCTAT
ATTAGAAGGGGTGTCAAAAATATATCAACTGGTTAGCGAgacttgagaaa
ttttttcgagGATATCAAGGAGGTGCGAACTTTTtgtggaatttttgaaa
atatcctcTACCTCTCCACCctatttctgaccactccctaattTTTTAGC
TTGATTTTGGGTCTTAAAAGACTGTAAGTTAAAGCAGAAGTGTTGGTTGA
ATATCGGACAAAGATTGTTTATCACCTTGGAAGATAGCCTTTTGAGACAG
CGAAATCTCTGCAATTGTcacaaaaagaagcaaaaaaaatttcggtcTCC
TTAATGGTTCAAGATATGATGCAAATAATCCAAAGTCTTCAGGAAGCACC
CCTCATCACACCGCGCTAAATTCTTTGCCATCACAGTGAGGAAAACGGCC
AAAATTTATAGATTAGCGCCATcacaacaaaatcttttttggaatcACAC
CAAACAAACAGTCTTGGATTTCTATTAAGAGCCGTACAACTATAANTTTT
TGGAATCACACCATACAAACAGTCTTGGACCTCTATTAAGAGCCGTACAA
CTCAAAAAAAGATTATCGAATTGAATGAACCTTGTTGTAATCTCGCAGGG
GTACGGGGTCAAAGTGACAGACCCGCTAGCCGATTAttacaaccccttct
cacagacccggtagtattttttcagccagtggggataaaaataacagact
gaaactcaatggggattgatatccccatatttttttatggttagggattt
caattcttatgttttcaagtcagaaaattcagtgatgatgggaaaaataa
taaaaaatttgcagtgaggattgatttatttgattattttcagtggagac
aaaaattgaaggataaATTTcgaccggggacgatattttggccaattttt
ccagtggaaaggggtcccattgggtctgtgagaagggtatGTATTATCAT
AAAAATCTAATCccacctactctcgggtacctaatagccgtccccccgct
aattaatttttcgaaaattttccacccaggacattcttattccaaccccc
ccccNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNcccaggacatttttattccaatcccccccccg
cttattaagttttgagagtttttccaatcccccgctttttccaatccccc
gcttattccaatcccccgcttattccaatcccccccggctattaggtacc
cgagagtaataaaACTAACTAACGTTACCATAACATAATgagctgaaaaa
tatataagGTTATCTTGGACAGCTAGAGAAGTGATATGATAATACGGAAC
AGAAATAAAAGACACTCTGACTTACTGACagttgattttaaattttgatt
tcatagaCCACCATGGCAGACACCGAAGAGACACCGGAACAGAAAATTGG
CAAAACATCTTAAACCTGGATACATTAAAGGAATTCGTTCAAAAGCATTC
CAACGAAACATTTCAAAGGGAAATTACACACGTGTTGGGGCAATTGATGT
TGAATTTCCCTGCAGATAAACTCTGCAAAAATTTTATGATCCGATGTGGA
AAAGGTAACCAATCCAGTTTCTTCTAAAgtacacatttttataagaacaa
actatataagaacataaggcttcgacggcCAATATATCAAGATTaaaatt
tagaacattttaaggctttgcggactctaaaagatccaatttctcagaaa
atggacgaaaatactcacaaaatggcgaaaataagaatatgttaagacat
tttaaggcttaaaactcaaaagttaagaacatccgaacgCTTCAGAAATT
CTGGATGTGAAAAGTATGTAATATAATACTTGCGCTAGAATTGAAAACAA
CTCCAAAAACACTTCAAAAGCTGTCAAAAACTCTACTGATTATTTCTAAG
TGACCTCTTTAAGATTGGAATGCTGTATTTTGTTTCCAATTAAAGTGCTT
TGAAGCAGGAATAATTTTGTCACGTGGAAAAATCTGTACTGTAATATGAT
TTAGAAaatccaaaacaaaaaaaaattctcactaGTGTGATATCCAAAAA
AAACCTGTTTGGTTTTTTCGCCATTAGAACTAAAATATTTTCGCTGAAAA
TTCCTTCATGAAGCTGAGAGAATTTCAATGATCCAACAATCCCGGATCAA
AAGTTGATTATTGAATAGAAAAGCGTATCGTCCATAAGCTAACCAGTGGA
ATTATTTTTGTAGAGAAATGTACAGAGGAAAAGGTTGTGATTGCTGGAGA
TCAAGAGATTGGGAACAAGGGAAAAACAAAATGTATTCGTGGTCCACCTG
TAAGTAAAGTAATCTCAtttttttcggaatttcttAGAGGTGCACTCTTT
TCGTTGGATGCTTGAAAACCTTGGTAATCGTTTCTAGACGAGATAGTGGT
TAGACATGACGTAATTTATTAAAAGGTctactttgaatttgaagagcttt
ttcgatgtttttatCAAGGATAGAAATCCCAGATGGAATAGAAGGCATAG
AAACTGGACAGATTCTCGTCTACAGACAAAAAGTTGCAACATTGAAATCA
TTCATTTCCCATAGGTACAGTTTTGCATGGTcccttttaaaaatttccaa
gcATTATCTATTACCTAAATTTATCTTTATCCAATTACATCACTTTCTAT
TTTAGGGTCCACAAGGTCCACCTGGTCCACGAGGACCtaaagggtcgaaa
gggttagGATTAGAACCACCAAAATTGGTTCAAAATTCACTAGGTGATCG
TGTAGTTAATTTGACAGATTCGACAACTTTTGAATGTACATTTTTTGGCA
ATCCAATACCAACAATATCATGGAGAAGCGTCGCCAATAATGGTCGAGTC
AGTTCTACTGTTGACAAAGAAAAATCAGAGATCACAACCCAATTGACCCT
TAAGAATATTTCATGGAATGATCAAGGACCTGTTGAATGTCGTGCGAAGA
GCTTACTTGGAGAAGATTATGGCTCAGGAAATCTTTCTACGTTGTGTAAG
TATACTAACGAACGGTAGTTCCATTTGGatgttttttaacaaaatttgag
TATTGGGTAGATATGACATGATGAAGGGTGAGGTCTCTGCTGCCTTCATT
TGTGATACGGTATTTTCCACATGTTACCATGAAACAAGGTGACCATATCT
GCACAGAATAGTTCGACTTAGTTCATAGAACCGAAGAGCTGTCTCTATCT
GTTTCATCTATCGTATCACCTATTAAGGGGGTAAGTAGAAACCATAAAAA
TAGTGGAgaaaacatcctccacattgcCCGATGATGGCAATGTAAATCTC
GttatccaagccacgataaacttccgaTATTGATAAGCATAATTCACTTT
CTCATTTTTTACTCTAATTTCGTCAATAGCGGAACCAGTGATCCACATGA
CAGAAACTTTGGTTTTCGCACCAAACGGAGTTAATTTCCAGCTACCAGAA
TGCAAAGTTCGTTCAAATCCAACTGCTACAGTTACATGGAAAAGGATCTT
CTGGTCGATGCCTGTCGGTCGTTTTAATGTTCAAGAAAACAAGTTGATGA
TCAATAATGTGCGCTATTCAGATGAAGGATTTTATGTCTGTGAAGCTGAA
AATTATCTAGGTATCAATCATTATTTGTAGTACTAATTTATTGTTATGAT
TCTGAGGGTCCACATACGatactgcaaaaaaaatgtatNAACTGGACAGA
TTCTCGTCTACAGACAAAAAGTTGCAACATTGAAATCATTCATTTCCCAT
AGGTACAGTTTTGCATGGTcccttttaaaaatttccaagcATTATCTATT
ACCTAAATTTATCTTTATCCAATTACATCACTTTCTATTTTAGGGTCCAC
AAGGTCCACCTGGTCCACGAGGACCtaaagggtcgaaagggttagGATTA
GAACCACCAAAATTGGTTCAAAATTCACTAGGTGATCGTGTAGTTAATTT
GACAGATTCGACAACTTTTGAATGTACATTTTTTGGCAATCCAATACCAA
CAATATCATGGAGAAGCGTCGCCAATAATGGTCGAGTCAGTTCTACTGTT
GACAAAGAAAAATCAGAGATCACAACCCAATTGAACCTTAAGAATATTTC
ATGGTATGATCAAGGGCCTATTGAATGTCGTGCCAAGAGCTTACTTGGAG
AAGATTATGGCTCAGGAAATCTTTCTACGTTGTGTAAGTATGCTAACGAA
CGGTAGTTCCATTTGGATGTTTTTTAACAAGGTTTGAGTATTGGGTAGAT
ATTATATGATGAAGGGCGACGTCTCTGCTGCCTTCATTTGTGATACGGTA
TTTTCCACATGTTACCATGAAACAAGGTGACCATATCTGCACAGAATAGT
TCGACTTAGTTCATAGAACCGAAGAGCTGTCTCTATCTGTTTCATCTATC
GTATCACCTATTAAGGGGGTAAGTAGAAACCATAAAAATAGTGGAgaaaa
catcctccacattgcCCGATGATGGCAATGTAAATCTCGttatccaagcc
acgataaacttccgaTATGGATAAGCATAATTCACTTTCTCATTTTTTAC
TCTAATTTCGTCAATAGCGGAACCAGTGATCCACATGACAGAAACTTTGG
TTTTCGCACCAAACGGAGTTAATTTCCAGCTACCAGAATGCAAAGTTCGT
TCAAATCCAACTGCTACAGTTACATGGAAAAGGATCTTCTGGTCGATGCC
TGTCGGTCGTTTTAATGTTCAAGAAAACAAGTTGATGATCAATAATGTGC
GCTATTCAGATGAAGGATTTTATGTCTGTGAAGCTGAAAATTATCTAGGT
ATCAATCATTATTTGTAGTACTAATTTATTGTTATGATTCTGAGGGTCCA
CATACGatactgcaaaaaaaatgtatggGCTGAATATTTAGGTTGTTAAa
tatctttccttttttttcgttCTGGCATGTTATATCGCGTTGTCTTCGTT
TCCTTTATTGATTTGCATTGAAAAATAACACTTTGTCGGTGAATTCAGCA
GAAAAGAATTAACTGACCCTGGTTTAATGAATATCTAAACAAGCAGAAAC
CTGAAGAATAAAATGTATATAGCATGATAACCTTTTCTAGTTTTGTTCCA
GGCtaacaatcaaatcaaaggAAAGAATCCGATTCATTTTCCACTTCCAT
ATTCCCAGGTAAAGACAAAAAGACAGTACAACTGAAAGTCAAAGCATTTG
AAATGTATCACTCCTCGCCATCATACATTGCTTCCATGACAACTGACACA
ACAAACGTTACTTGTTCCGCATACGGAAACACCAAAGAAATGACCGGTAC
AATCAGTAAATCTGGACGAAATATACCGGTTGTGATTGAAAAGCGGGAAG
ATAACTTGTTTGTGGTAGCAGCAGAAGTTTCAGAGGATGGGACTTATGTT
TGTACTATAAAGtatgataaagaaaaagttgaGAGCGCTTCAGTTGTGGA
ATTCTTTACGCGTAAGTTTTGAATTCTTAATTCATCTTATAATTTAAATT
TCAAGTGCACTAAATTTCAATACAAGAAATAATATAACTGATTATTGTCA
ACGGAAGCTGTTCCAGCAAagtttctgataaaaaaaatcgACGGAAGACC
TTACGTGTTCATAATAtgtaaatatttcattttcatcaatttcaGTCCAA
TCGAAAATCTTGAACAGCACTCAAATCGAAACCATTCGAAGTTGGTTAGA
TGAAGCCGGTAAACTTGGCAAATATGAGCCATGCTTCACCTTGTCTACAC
CTTCAACCAACTTCTATCAACCTTCTTACTGCGGAGACAAATCAAATACT
ATTTCATTGATGCAAGTTAAAGACAAGCTCAGATACGGACGGGATCGTTA
CGGCAGATATAGATACGATTGGGGGAGTATTTATGGCGGATTCACTGACA
TCCCATGGAATAGTAAGAAAATATAcacacccagctggcacacaacgttg
tttcaacgttcatctaacgttaaaatggacgttgtgaacattagataaac
gttaaaacaaagTTGTTTGCCAACTGGGCaacttttacaaaattaaaCAA
TACACAGCTTCATGTAAAAAATTCCTTAGCTATTTTACTTGAAAATCTCA
GTAATGATCTAAGATTCAACATCGTCTCAACGAGCTGGGCATGTGTTata
ccaaaatttccaaattttacgcAGAACATACAATGAGCCAATTTTGGGTC
CAAATGGCTCAAATCACATCGaatcaaaagtcaaattttcgaaaactcAG
ATGTTGACAATCTGAaccatgttaaaaaaattccctttttaagcattttt
tgctgacgtcagccttttttagataattttgaaaagattcaGATAAGAAC
TAATTCGAGGTCATGAAAGCGAGTACTATCAGAAAATGGTATTTTTTCTC
ATGTTTCTTCGTCCTTCTGTTGAGATATTGTGAAATAAAAGTGGGTGTTT
TTTTGTTgagtcagcattttttacatATTATTCGAGAAAGAGCATAGTAC
TAAACGGTCTCCGTCGTCGCAAACGTTGGCTATATAAACTGCTTACGCTT
GAAATAAATCTCTTAGTCAAAGAAGCATATGGAAGAATTGTATATCgatt
tttatatttaattttaggATATTCATCAAGAGCCAGTAACTCAACATTCA
TCTTTGACCTCAATCAAATGGAGAAATATCCTCTCCGCGATACAGCTTAT
GCAAGATCAAACGCCGTTTGTTATTACAATGGATATGGGCCTTGTTTTGG
TTCGACGGATCTCTACGTGCGTTCAGGGTCATTGGGAAATAAAGGCAGAT
GGGTATTCCAAGACGTCCCAAGTATTCAGACCAGCCGTGAAGTCAGAATG
GAGGTCTTTTACAAAGTTTAAACTAACAACAAGATTCTTTTTATATGTAC
TTTTTTAGCAGGATTTcagtttattttcattgtcCATTGATGTtctcaat
ttttattttgttaattttataagctaatcttaaaaataatttcttttgaa
aaaaaaatataagccTTGACAATAATGAAACGTATTAAGGGATTTGACAA
CAAATCATACTTACATTCGATCCTTTTGTCTCTGGACTCTCAAAGGATAG
TTTCTTATGCTTCAACTATTTGTCACTGTACTGTAGATATCTCAAGAATC
GAAGTTTGAAGACCATAATCAGAACAATTTCTACAATAGTGTATACTTTT
ACCATCTAAGATATCACATCAAAGTCTAAATCTCTCAACGTTCTCAACGT
ttttatatcaaagtctcatGTCACTTGATATAAACCCATGAGTATCTTTC
TTCCAATTAACAAAGTCCCCATAATTTATCTCGATCGTAATCCGTAGTTG
CTGAACACCAcataaattgttttttgaatttctctgTCCCCTTCGTTGTA
CAGGAGCGATATTCTTTACCTTTGTAAAGGAACGGAAATTTGCAGCAAGC
ACCGTCAGCTGTACCCCCATGTGACAGATGCAAACATTCGTCGTCTAAAA
TTCAATATAGCGTTACTATATAAGGTTTATGCAAAAAGCTTCCAAAGCTT
GTCTGCTCTGACTGACGGCCAGGGAAACTTCATATGTAACTACTGTTTTT
CCTTGACACTGAATGCTAAGCAGGTAAGCCGTACGCGCATCGAGTTGTGA
ACCAAACTTAGAGGTTGAATCCTAAACTTGCAAACGAGGCTGGACTCTAA
ATCTTCTAGGTAGGCCACCACATTAAATAAGAAATCAGAGACGATTGAAG
CTTTTTGATCAAAGTGAATTTTTACCTTAAAGATTCAATTAATTGAAAGa
aagaatatcaaaatgttTTATGAGATGAAAACTCACACAAACTAAATAAT
ACTACTGGAGAACAGTCGTTCACAGAAAATACATACCTAATTTACAGCTT
TGTACATCGATTCGTTTCTGCGAAATAAAGTTGATTTTACAAATGACGAC
ATTATTTAGATAATCACTTTCCAACGCTTTCCGTAACGGATTTACGATAA
CACGTAACGTATACAATCCATACTCGAGATCTGTAACATCGATCCATTGA
CAATCAATATTGAATTTATAATTATCAGCACATCCAACACTTATTCCTTG
GTCACCCTTCCCAGTACAATTGTAACGTTTTGAAACACTGTGATCACACA
TGCTATCTTCTAAACAAAAACTTGCTTTTTGACCATCAGATCGTTTGCGT
CCTTTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033648XLOC_033648Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053311-exon-scaffold_228-1491911889:596314..596698TCONS_00053311-exon-scaffold_228-1491911889:596314..596698Clytia hemisphaericaexon
TCONS_00053311-exon-scaffold_228-1510915933:596314..596698TCONS_00053311-exon-scaffold_228-1510915933:596314..596698Clytia hemisphaericaexon
TCONS_00053311-exon-scaffold_228-1575043694:596314..596698TCONS_00053311-exon-scaffold_228-1575043694:596314..596698Clytia hemisphaericaexon
TCONS_00053311-exon-scaffold_228-1491911889:598520..598717TCONS_00053311-exon-scaffold_228-1491911889:598520..598717Clytia hemisphaericaexon
TCONS_00053311-exon-scaffold_228-1510915933:598520..598717TCONS_00053311-exon-scaffold_228-1510915933:598520..598717Clytia hemisphaericaexon
TCONS_00053311-exon-scaffold_228-1575043694:598520..598717TCONS_00053311-exon-scaffold_228-1575043694:598520..598717Clytia hemisphaericaexon
TCONS_00053311-exon-scaffold_228-1491911889:599377..599462TCONS_00053311-exon-scaffold_228-1491911889:599377..599462Clytia hemisphaericaexon
TCONS_00053311-exon-scaffold_228-1510915933:599377..599462TCONS_00053311-exon-scaffold_228-1510915933:599377..599462Clytia hemisphaericaexon
TCONS_00053311-exon-scaffold_228-1575043694:599377..599462TCONS_00053311-exon-scaffold_228-1575043694:599377..599462Clytia hemisphaericaexon
TCONS_00053311-exon-scaffold_228-1491911889:599819..600158TCONS_00053311-exon-scaffold_228-1491911889:599819..600158Clytia hemisphaericaexon
TCONS_00053311-exon-scaffold_228-1510915933:599819..600158TCONS_00053311-exon-scaffold_228-1510915933:599819..600158Clytia hemisphaericaexon
TCONS_00053311-exon-scaffold_228-1575043694:599819..600158TCONS_00053311-exon-scaffold_228-1575043694:599819..600158Clytia hemisphaericaexon
TCONS_00053311-exon-scaffold_228-1491911889:600543..600773TCONS_00053311-exon-scaffold_228-1491911889:600543..600773Clytia hemisphaericaexon
TCONS_00053311-exon-scaffold_228-1510915933:600543..600773TCONS_00053311-exon-scaffold_228-1510915933:600543..600773Clytia hemisphaericaexon
TCONS_00053311-exon-scaffold_228-1575043694:600543..600773TCONS_00053311-exon-scaffold_228-1575043694:600543..600773Clytia hemisphaericaexon
TCONS_00053311-exon-scaffold_228-1491911889:602322..602624TCONS_00053311-exon-scaffold_228-1491911889:602322..602624Clytia hemisphaericaexon
TCONS_00053311-exon-scaffold_228-1510915933:602322..602624TCONS_00053311-exon-scaffold_228-1510915933:602322..602624Clytia hemisphaericaexon
TCONS_00053311-exon-scaffold_228-1575043694:602322..602624TCONS_00053311-exon-scaffold_228-1575043694:602322..602624Clytia hemisphaericaexon
TCONS_00053311-exon-scaffold_228-1491911889:602809..603075TCONS_00053311-exon-scaffold_228-1491911889:602809..603075Clytia hemisphaericaexon
TCONS_00053311-exon-scaffold_228-1510915933:602809..603075TCONS_00053311-exon-scaffold_228-1510915933:602809..603075Clytia hemisphaericaexon
TCONS_00053311-exon-scaffold_228-1575043694:602809..603075TCONS_00053311-exon-scaffold_228-1575043694:602809..603075Clytia hemisphaericaexon
TCONS_00053311-exon-scaffold_228-1491911889:603781..605369TCONS_00053311-exon-scaffold_228-1491911889:603781..605369Clytia hemisphaericaexon
TCONS_00053311-exon-scaffold_228-1510915933:603781..605369TCONS_00053311-exon-scaffold_228-1510915933:603781..605369Clytia hemisphaericaexon
TCONS_00053311-exon-scaffold_228-1575043694:603781..605369TCONS_00053311-exon-scaffold_228-1575043694:603781..605369Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_228supercontigscaffold_228:596314..605369 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.437106	0.566282	0.36867	0.330519	0.294151	0.175468	0.179236	0.0986855	0.929123	2.15529	0.992477	1.08677	3.61039	3.37207	40.6117	43.0833	16.5387	17.2936	9.29356	6.936	6.01276	6.40653	16.2696	15.8314	7.59719	7.05676	11.953	14.114	87.1657	66.4762
Blast
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BLAST of TCONS_00053311 vs. Swiss-Prot (Human)
Match: LOXL3 (Lysyl oxidase homolog 3 OS=Homo sapiens GN=LOXL3 PE=1 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 1.454e-25
Identity = 54/109 (49.54%), Postives = 73/109 (66.97%), Query Frame = -2 
Query: 3069 GRKRSDGQKASFCLEDSMCDHSVSKRYNCTGKGDQGISVGCADNYKFNIDCQWIDVTDLEYGLYTLRVIVNPLRKALESDYLNNVVICKINFISQKRIDVQSCKLGMYF 3395
            G K ++G KASFCLED+ C   VSKRY C   G+QGI+VGC D Y+ +IDCQWID+TD++ G Y L+V++NP  +  ESD+ NN + C   +    RI V +C +G  F
Sbjct:  626 GTKVAEGHKASFCLEDTECQEDVSKRYECANFGEQGITVGCWDLYRHDIDCQWIDITDVKPGNYILQVVINPNFEVAESDFTNNAMKCNCKYDGH-RIWVHNCHIGDAF 733
The following BLAST results are available for this feature:
BLAST of TCONS_00053311 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
LOXL31.454e-2549.54Lysyl oxidase homolog 3 OS=Homo sapiens GN=LOXL3 P... [more]
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