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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00005315 ID=TCONS_00005315|Name=TCONS_00005315|organism=Clytia hemisphaerica|type=transcript|length=810bp
GGTATTGCTCCACAAATCTTTGATTCGACTCCCGCTAAAAAGGAAATAAG
GTAGAGCGGGGCACAGGGTCCTGAAGACAGGACACATTAAATGGCTGAAA
TCGTCGTCACGAAGAAAGGGAAATCTGCTGAGAATTATTCTGCAAAAGAC
CAAccttcttctttgtttttctgtctTAAGTTTCTGTTTATCATGGCTCA
TATTTTTGCATTTATGCTATGTGCTTTTATCATCTTCCTCTCACAACCTG
GGACGTCTCTGTTCTCATGGCATCCGACGTTGATGGTCCTTGGGTTTGGA
CTGTTCATGTTCGAAGCCAtcctcttattttcaccatacaGCTCCCTGTT
GGGTGCATCTGATCGTAAGCTGAAGGTTAAATATCATTGGATTCTTCAAG
TCCTTGCTGCAATATGCTTCAATCTTGGATTTGCTGTCATTtattacaac
aaaaatctaaacAATAAACCCCATTTTACCTCTTGGCATGGCAAAATTGG
ATTCTGGGCCGTTGCTATATCAACGTTTCAAACGATGGTGGGGCCATCTT
TAATTTACTATAACAACCGGATTTTGAATCCGATGGGTACATCATTGGCC
TTACGGAAGAAAGTACATGGCGTTGTCGGAGCTCTCGCTTTTGTCTTAGG
AGATGCGACCATGATTTTGAGTTTGTTTTCCAATTTCATGGTTAAAAATA
CCAGTGAGACATCGTGGTATTTCCTCTTAATCTTGAAAACCATAATGGCT
TCTGTAGTTGTTAACCAGGCTAGTTCAAAGTATGTCTTCAAGTCCAAGTG
AGACAATAAC Run BLAST on NCBI protein sequence of TCONS_00005315-protein >TCONS_00005315-protein ID=TCONS_00005315-protein|Name=TCONS_00005315-protein|organism=Clytia hemisphaerica|type=polypeptide|length=236bp
MAEIVVTKKGKSAENYSAKDQPSSLFFCLKFLFIMAHIFAFMLCAFIIFL
SQPGTSLFSWHPTLMVLGFGLFMFEAILLFSPYSSLLGASDRKLKVKYHW
ILQVLAAICFNLGFAVIYYNKNLNNKPHFTSWHGKIGFWAVAISTFQTMV
GPSLIYYNNRILNPMGTSLALRKKVHGVVGALAFVLGDATMILSLFSNFM
VKNTSETSWYFLLILKTIMASVVVNQASSKYVFKSK Run BLAST on NCBI transcript from alignment at sc0000052:56099..65984- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00005315 ID=TCONS_00005315|Name=TCONS_00005315|organism=Clytia hemisphaerica|type=transcript|length=9886bp|location=Sequence derived from alignment at sc0000052:56099..65984- (Clytia hemisphaerica)
GGTATTGCTCCACAAATCTTTGATTCGACTCCCGCTAAAAAGGAAATAAG
GTAGAGCGGGGCACAGGGTCCTGAAGACAGGACACATTAAATGGCTGAAA
TCGTCGTCACGAAGAAAGGGAAATCTGCTGAGAATTATTCTGCAAAAGAC
CAACCTTCTTCTTTGTTTTTCTGTCTTAAGTTTCTGTTTATCATGGCTCA
TATTTTTGCATTTATGCTATGTGCTTTTATCATCTTCCTCTCACAACCTG
GGACGTGTAAGTATGTTTCATTATTATAAATTATAAACTAAAGTCTGTCC
AGATATAATTGGCAGTGGNNCAGGGTTGCTAGTAACGGCTCGAATTTCAG
TCAGGTTATAAGTCGATGTCGGAATGAGCAATAGACAACCTTCTTTTGAG
ACCTTGTAATTATCCTCTCCCGTGGAAACAAGAATGCCTGTAACTTTTGA
TAGTCAAATATAATTATGGAAATTTTTTTGCTTGTTTTAGAGAGCCAAAG
GTGCTGTATTTGAATGTATTTTTGGTTGAATAATTCGCGATTTTTAGTGG
TTTAATTTGCGATTGCAAAAATTGAGCTTTTTTTCTACTTATGCTATCTA
TAACGTTCATTTTTACAACAGTGGTAGTTCAACCTTAGGTTAAGAAGTTT
GTTAAATTTTAAGGCAAACAGAAAAGTCCTTCAGAAGATATGGGACCCGA
AATACCCCTTGGTAGCACTTTTCTGTGAAATATCAAATCTCCAACTTATT
ACTAAAAACGAGGGTTATGTTATCTTTTTCGAACAGTGCAATTAAAAGTT
GGAAAATTTTAAGTGTTGGTGCGAGTCTGCTAAATGACGCGCCTTACGCG
CCCACGCGCCCTCATATTTTTAACGCGCCTTACGCGCCCACGCGCCCTAA
AATGTTACGCGCCCACGCTCCTACGCGCCCTGGTAATTTGACGCGCCCTA
AAAATTTGACGCGCCATAAAATATCGACGCGCCCTGATAATTTGACGCGC
CCTAAAAATTTGACGCGCCCAGATAATTTGACGCGCCCTAAAAATTTGAC
GCGCCCTAAAATATCAACACGCCCTAAAATATCGACGCGCCCTTAAAAAA
TCGACGCGCCCTGATAATTTGACACTACCTAAGTAATGAGATTGATTTGA
AGATCAGAGTTTTCTCCATGTCTCATAAAGAATGTTGTTCTTAGTCCAGT
GTCGTTCTATGAGCGATTGAGGATATAAACCTTTTTCCAGAGTATTTTAT
TACCAAGCCATAATTCGTGTTTTCAGTACATGATTTTTTTCTACGTCACT
GCAGTTATCAAATTATTATTTTAAATCACTCTTTTCCAAATTGAGATGTA
CATTTAACAAAGACAGCGACAATGGAAAACTTTTCAAAAATTCCCAAGTC
AAAGATGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNACAAATTCTATGAAATAGACTAATAAAGCGTACATAAA
GTGTACAGCCGATAAATGGAACGGGTCGACTTTAGGCTAATCTCTTAAGA
AATGATCATTTTGCTAACATCGGCATTCTTTTATATACCAACCATGTATG
ATTAGACCGGTCCCATTATTCCGTCCGTCAAAACCGTTGAAAACTTAAGG
CACATCAAAACCCCAAGGCGTGTCGAAATCTTAGGGCGTGTCAAATTTTC
AAGGCGCGTCGAAATTCTAGGGCGCGTCGAAATCATAGGGCGCGTCAAAT
TTTCAAGGCGCGTCAAAATCATAGGGCGCGTCAAATTTTAAAGGCGCGTC
GAAATCATAGGGCGCGTGGGCGCGTAAGGCGCGTCATTTAGCAGACTCGT
GTTGGTGCATTGGTATTATTGCTATTGGTATCATTTATTATTTCGAAACG
AAGTGAAATCACAGTATAATTGTTTTTATTGAAAAGATAAGCATGAACTT
ATATTGCCTTTGTTATTTTAAGTCTAAAGAACTTTGCTAATTCCGAAAAC
ACTAAACACANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAATTACCAA
GTTCCGCACTGGAAAAACGCACCTGATGAATTTTGGTCCGGAAAAGGTGC
ACCTATACCTCGGAAATTCACCCAAAAAGGCAAAAAATTGCTAAAATCAC
CTGCACTTGAGGAAAAAATAGCTGAACTCTGCACTTGAGGTTAAAAACTC
GTCTGAACAAGCACCTGAAAACCTCAAATTTTTGCACCTGCACTCGACTT
TTTCTGAGTTGTGCACTCGAGATCTCGAGCAAACGTGCCACACTCTGCAA
ACTGGGAGATTTGATATTTCACAGAAAAGTGCTACCGAGGGGTATTTCGG
GTCCCATATCTTCCGAAGGACTTTTCTGTTTGCCTTGAAATTTAACAAAC
TTCTCAACCTAAGGTTGAACTACCACTGATGTAAAAATGAACGTTATAGC
ATAAGTAGAAAAAAAGCTCAATTTTTGCAATCGCAAATTTAACTGCTTAA
AATCGCGAATTTTTCAACCAAGAATACATTCAAATATAGCACTTTTGATT
CTCTAAAACAAGCAAAAAAATTCCATAATTATATTTGACTATCAAAAGTT
ACAGGCATTCTTGTTTCCACTGCCAATTATATCTGGACAGACTTTACTTC
CTTCAAGAGCAGCCGTCGGCAGATTTTTTTGAAATATATATCTGTTCATT
TTTCCAGGAAAATAAATTTTATGGATAAATCTAGGAGAGACTTTCCTCAA
AACACCCAAGTAAAATCCAGGGGTCGCCTTAAAGACATCTTGATCTGTTC
TCACATTTCAAGGAAAAACATATATACAATACACCTTTCCCGTAATTCGT
AAAACTAATGTGTGCGCATTATTTTGATGCTCTCCACCGAGCAATGTGAG
CTCCACTGTTGTGTTTGAAAGGTAAACAAACGCTTTTGCCTGCGAGGGGT
TAGGGAAGACGGGTTTTCAGCTTCTAACTTTTGATAGCAATCTTCTTTTG
GCAAAAGATTGCGGGAAAGGTGTATTGTGAAAAACACAACCAGATGCCAG
ATTTTTTTCCCAGGAAGCTTCATAATTTTCTTAAAAGGTCTCATTTTCTA
GAAGCATTTTAACCTACTTAGAGAATAGCTGTTATATTTTTCCAGGAGCA
TAATATTTCTACAGAACAGATATATATACCTTTTCCAGGAGGAGTCCCAG
TTTTTCCCAGAACAGATGGAGATAATATAATCCAGGAGAGATTCTAGCAT
GCATATTCCAAATTTAAATGTAAAAAAATTGAGTATATAGCTGCAGTTTT
TGAGTAATTTACATATTAAAACGTTTAAAAATTGAGCGCTTGGGCGTCGT
CGTAGCTAGGCAGGGGTTAGAGGAGTGTTTCTTCCAGGCTCTAAATAAAA
GCAGCTCAAACTGCCCAACCTGGAAGAAACAAGTAACCCCACACCTGCAA
CCTGGACAGTCAGGCAAATTTTCAGGCCTTTTCTGCTACCGGAAAACAGT
GGCAGAAATTCTTTGCTTGAATTTTGAAACTCAATCCTAATTTTTTTTGC
ATAATGAGCCTTGAGAATCATGACAAAAATTTAATGTCCTAGGCCCTTAT
TATCAGAAAAGCACATTCTGAGGTTAATTCTTTGTGTTTTAATGGGCCAT
TCTAGTTTTTATCTGTTGTTTGAATTCACCAACAGATGATATAGAATTTA
AGTAGCAAATTGCTTTCAAGAAAGTCCAGTATTTCGGTAACAAATTTACA
AAATACATAGCTGTCAACTCTCCCGCATTTTCTAGATTTTCTCCCGCATC
TCCCGCATTTCCAAAACTTTTCCAACTTCCTGAAAAAAAATTCAGCTTTT
GAAAAAATGGTATATATGGCAAAATTTCCAGATTTTGGAAAATTGAGATG
AGAAATTCCCTGATTTCCTCGATTTCCTGAAAAAAATTTCCAATAAAATT
GAATTTTGCGGGAAAATTCCACCGATTTTCCGATTTGGAGCNGGAGGACA
CTATGTCCCCCGATTTTCCGATTTGGAGCTATCCGGCATTTTTGTGAGGT
GAAGTTGACAGCTATGAAAATATCTATCAAACCGTGGAATTCCGTTACTG
TAACCTAAAAAAATCATGGAATTCCAATACTTTTAATGCAAAATTAAGTA
CTGAATTCTGTGCCAAAATTTATTCAAAAAATAGATGTAGTCCATTAGGG
GGGTGGTGTTTTTTTTTCTGGAATGGCCCAATAGTTCCCAACTAATTAGA
CAGAGCCTAGGTTGATTACTTTGTTCTTCAAAATGAACTCAAACTCAATC
ATTGAAATAAAAACGATAGTAGCTCAAAACCTTCAATACGTTCATAACAG
TAAAAGCCTTGATCATGAGGTCTTGTTACACTCCTGCTTTAATATCATCG
TTATATAACACTAGCTGTCATAGCGTCATCCTGGGTTTAGATCCCAGGCA
AAAATTAGGTCCCTCCTGAGTTTTAAGTCCCCCCAAAGATTTATGAATGT
TTTGTTAGCCCCCAGGACTTTTGAGCCTAGACACTTTCTAAAATTTGATC
CAGTAAAAAAGGGTTTTCCAATGTAAATTGAGTTCAGTTCTAAGTTTTAA
GATAAAATATTTTGCACACTTTGTATAAAAATATCACGGCGCAGGCGAAA
ATTTTTCAGATTCATGAGCTTCAATTTGGGTAATTGAAGCCAACTATTAA
GCTGAATTATTTTAGCCCCCACCTTAAGTGATGAGATTTTAGCTCCCCCC
AATTTCATAGCCCCCCCCCCAAAAAAAAAGTGGTGTACTTCCAGCCAAAA
TTTAGAGTGTAACTAGCAATACTTTTGCAGTACAATACTTTTTGTGTATC
AAAGATTAATGCTGCAAAAGTGCTATATACTTGACTCACAAGCAAAAAAA
ATGTGCTGCAAAACTTCTAAAGGGATTCATGAAAAAATAAACAACAGACA
GCGCTTTTTAATGAAATTAACACTTTCAAAACCTATGAGAAATTACCTAA
ACTTTTGAGTTATAGATGAAAAGATTTGAACGGAACCAACTTTGGAAACT
AATTTGAAGAACAACTTTCCAAGAAAAAGGTGCTTCAAGCATCAGTCATT
AATTTATTGACAAATTTAAAACTTACTTTTAATTCCCGTTTAAGAAACAA
GAAACAAATTTCTTGGGTAACAGTGAATTTGAAGATTTGAGGGTGCTTTT
CCTTTTAAAAGAAGAAAATTCGTGGAGGGGGTATTTTTATTGTTGGAGAA
GCCCTGAAAGGTTATGTACATATTTTACTATACTAAGATATATGGCAAGG
TCTTAAGTATGCTAGCATGGTTTCATCACCCAATCAAACTTGGGGGGATT
TAGAATTTTGCCAAATTTATGATGGGCAGGTATTTTTTCTTAATACGTAT
AGTGTGGGACTAAGGCCGATGGGGCGAGAGATTTTATGATNTTTAAAAAT
ACGTATAGTGTGGGGCTAAGGCCGATGGGGCGAAAGATTTTATGATGGGG
GGTTATTTTTGTGTATAAGTATTTTCGTATTTTCTATTTTTAACCATTGT
TAAAATATTTTAACATATTGATAGTTTAGTTTTACTTTTATTTAAACATG
CAAAAGCACATATGCGTAGGAGATACCCTGCAAAATTTATGGGGGTAAGC
AGACGTTTATGACATATTCATTATCTTTTGATAAAACAAAACAAAGACAA
TAATAACAGTGTCGTAAAAACCGCTCTCATCCATAAATTTTGCAGGGTAT
CTCGCTACGCCTATGAAAGCAAGATACCTCTACGTAACTACGAGTAAAAT
CATTGTATGCTGTTTCTTGTATTTTTATTCAGAGATGAGGGGAAAAAATG
ACAAAAACCTTTGATGGGTCCTCAGGTTTTATTGGTCATGGAAGGGCTAA
GGCTGATTTAACCTTTTGATTGATGGGGGATTTAAAAAGCTGGATAAAAC
CATGGCTAACTGTAGTTAAGTTAAACACAGCTGCATGGCGGGACCTCCTT
TAACTCTAAGATAGGGTAGTTAAACCTCATCCTTTTACAAAGTAAAAAAG
GTAAAACCAGATTTTAACGTCCCGCCCTCCAATGAGTGCAATCCTCCAGA
GCCAGAAATCTGAAAAAAGAGCTGCCCTCCAAAGAGAGCGGCACCCCAAA
GAGTGGCACCTGTCAGAATTTTATAGGCATGTCAACCATAATTTGATGTT
TCATTAGAAGTTTTACTATTTTGAACTTGTAGTTGTAGCAAAGAAATTAT
ACAGAATCAAACCATACAACCCAAATAAATAAACGGTAAAAAAGTTGAAA
AATCTGTAGGTTTTAATGCATTTGAAATCTTTCCTTATTCAATACTTCAT
AAGACCATTATCACAGCAGGTGTGGGAATCGTGAAATATTTAGTAAACTC
CTTGTGGCTGTAGAATAAACATAATATTCAATTCAGGCGCCTGGGAAAAC
TATTTTTGTAAACATATTCTACACAGTAAATCCTTCTTCTAGCCACCAGT
CACTTAAGTTTTTTAAGATGTCCAAGTTTTATACCTTCTCTTCAGGAATA
GCATCAAATAGAATCTCCATTTCAGTTCATTTTGATATCAATAATACATG
TTTCAAGGAAATTGTATCCAGACAGAAGGCATATATTTTCATATTAATTA
TCAGTCTTACTGTATGTCTATTTTTTCATGGAAAATCTGTCAGTTATCGT
ATTTTCCAATGAATTAGGGACAGCGTATTTTACATGTATTTTGGATGTTA
TTGAAGGTTCAGAGTGGATGTTTTTAACAATATGCTTGGTTGGACTGTTG
ATGTTGCTTATGGTTTTGTGCTCATTTGAAAGCATACTTTTTAATAAGTA
TGTGGTCTGTATTTGTCTAATCCTCACTTTGATCACTTGTTTGACTTAAT
GTATGTATTATTTCCGCAAGCAATTCAATTATGCTAATTGCATGTCAAAC
CCACCTATTTTAACTGTCGTAGTTCAAAAGCTTAATATGGTGCCAATTAA
CTGAATTTGTTTCTTATTCTAAAACTCTGTTTAAAAGTGCAATTTGTAGT
AAATTGTGGATTTTCTGTGCATGGGATTATGTATGGTGCTTGTTTCATGT
GACTAAAGATTGTTTTTCCAAGATTAATCGTTGACAACATTTCATGAAAT
ATTCCCCCTTTTTTTGGGGGGGGGGGGGGTTTACTGGAAGGTAGAAATGA
ATTTTGAGATCAGGAAAAATGGTAAACAAAATCTTCAAAGTTCAAGGATT
TGTTAGCCAAAGCGTCTAATAGAACAAATCATAAGGGGCTGTCAATCAAG
ACATTTTTACATGTAATTTAATATCTTTCCACTTCTGAAACCCACATTGT
CAGCTCTTTTGTTTGATTTTTTGCAATGTAATAATAGTCTACAATAGTGA
TGAAAAGTTGATTACAAGTGCGTTTAAAAATGCTTAGTCAGCATGATGAA
GAGCTTTTTTTATTTAAGACAATGTTTTGTGTTCAGATATGATGATATAG
AAAACTCTTTCTATCCTGTTTTTGTTATAAACTTTAGATGGGTTGCTTCT
TAAAAGTAATAGACATACTGTGTTATAATCGTGTCATATTTTACTTTAGG
AGAATTATTGCAAATCTCGAAATCTCACTTTTATACATTACCTAAGTTTG
GTTTACTGCAACGTGTAGGTTTTTGATGCTGTAATTTTTGTATGAAGTAC
TTTTCTTACTGATCCTTTGCATTTTATTTATAGTTTCCCATTTTTGTTTA
TGGAGGAGACGGCTAATATTTGTCTATGTCTAGATCCTGACCTACTGAGG
ATCGCAGTAAATCAGTGCTTTTAGTTTTCCGTACGTTTTGGATTAGCTTT
CTTCATTTTGATTCTATGTAAGCAGCACGAAGAAAGATGAAAGTAAACAA
ACTCTATTATATTATCAACGTGCGCAGTTTTCACTTATGGACTAAATTTG
TAAAGCTGACATTGTAATTATTATTGAAATGCTAATTATTAAAAGTTATA
AGAAATAAAGCCAAAGAGTAAAGCCTCCTATCATGAATGAAAGACTTTTT
ATCAAAAAGTTTCAAATTAAGTGTTTTTTTTTTAACTATTAGGGAAGTAG
GTCATGGGATATTGGTTACCTATTCCCTAGCCTTTCAAATCTGAAAGCGT
GGGATGACAGATTCATGATGTATGAGAAGAAGAAAGCTACATTTTTTTCT
CAGAATTTTGACTAAGGGATTTTAGTTTATTTAAGGGGATTTTATTATAA
CATGATGGTCTAATATAAATGGCTGTAAAGAAAGAGAAACTCTTTCAGAT
TAAGTATTGTCAACAAACAAACTTTTTGTTTGTAATCTATTTGACCATTT
TTTTCTTGTAAAATCTTTTGGATTCCAACATTTTGCTTTTACAGTGGAGT
CTCCATAACTCGAACTCGCACGGGGGAACATAATTTATTCGAATAATGGA
AATTCCTAGTCATGATTTATAAGGCATTTTTAACTGAAGGGACTAGAAAA
CTTTTTCGAGTCAAGGAGAAATGCGACATATAGTATAGAGGCTCGAGTTA
TGAAGACTCCACTTTGTATTAATTGAATTAACGACAGCAAATACTTTCTT
CTTTCCAGCTCTGTTCTCATGGCATCCGACGTTGATGGTCCTTGGGGTGA
GAATTTCTCTTCCTTAATTGTTTCTTTTGAATGTTCATTGTATTTATAGA
CTCAGCGCAGTATATTTTTCTTGGTATCACAAGTTTTATTTCAACTATAA
TCTGAAACTCTACAAATTCCGACATTTCCAATACTGTTTTTTTTCTCGAA
GTTTTCGAATTCGAACGGGAACGCATTTATCATAATCAGGATCCCTGTAA
AACACCAGGCGTTTCTGTATGAAAAATAAGCTTCATGAATATCAAGAGTT
CTTCAGTATTACTGGATATCTGTCTGAGGGATATAATCTTTATTAAAAAT
TGTTGAATTTTCCTTTTCAGTTTGGACTGTTCATGTTCGAAGCCATCCTC
TTATTTTCACCATACAGCTCCCTGTTGGGTGCATCTGATCGTAAGCTGAA
GGTTAAATATCATTGGATTCTTCAAGTCCTTGCTGCAATATGCTTCAATC
TTGGATTTGCTGTCATTTATTACAACAAAAATCTAAACAATAAACCCCAT
TTTACCTCTTGGCATGGCAAAATTGGATTCTGGGCCGTTGCTATATCAAC
GTTTCAAACGATGGTGGGGCCATCTTTAATTTACTATAACAACCGGATTT
TGAATCCGATGGGTACATCATTGGCCTTACGGAAGAAAGTACATGGCGTT
GTCGGAGCTCTCGCTTTTGTCTTAGGAGATGCGACCATGATTTTGAGTTT
GTTTTCCAATTTCATGGTTAAAAATACCAGTGAGACATCGTGGTATTTCC
TCTTAATCTTGAAAACCATAATGGCTTCTGTAGTTGTTAACCAGGCTAGT
TCAAAGTATGTCTTCAAGTCCAAGTGAGACAATAAC Coding sequence (CDS) from alignment at sc0000052:56099..65984- >TCONS_00005315 ID=TCONS_00005315|Name=TCONS_00005315|organism=Clytia hemisphaerica|type=CDS|length=2133bp|location=Sequence derived from alignment at sc0000052:56099..65984- (Clytia hemisphaerica)
TTTGGACTGTTCATGTTCGAAGCCATCCTCTTATTTTCACCATACAGCTC
CCTGTTGGGTGCATCTGATCGTAAGCTGAAGGTTAAATATCATTGGATTC
TTCAAGTCCTTGCTGCAATATGCTTCAATCTTGGATTTGCTGTCATTTAT
TACAACAAAAATCTAAACAATAAACCCCATTTTACCTCTTGGCATGGCAA
AATTGGATTCTGGGCCGTTGCTATATCAACGTTTCAAACGATGGTGGGGC
CATCTTTAATTTACTATAACAACCGGATTTTGAATCCGATGGGTACATCA
TTGGCCTTACGGAAGAAAGTACATGGCGTTGTCGGAGCTCTCGCTTTTGT
CTTAGGAGATGCGACCATGATTTTGAGTTTGTTTTCCAATTTCATGGTTA
AAAATACCAGTGAGACATCGTGGTATTTCCTCTTAATCTTGAAAACCATA
ATGGCTTCTGTAGTTGTTAACCAGGCTAGTTCAAAGTATGTCTTCAAGTC
CAAGTGACTCTGTTCTCATGGCATCCGACGTTGATGGTCCTTGGGATGGC
TGAAATCGTCGTCACGAAGAAAGGGAAATCTGCTGAGAATTATTCTGCAA
AAGACCAACCTTCTTCTTTGTTTTTCTGTCTTAAGTTTCTGTTTATCATG
GCTCATATTTTTGCATTTATGCTATGTGCTTTTATCATCTTCCTCTCACA
ACCTGGGACGTTTTGGACTGTTCATGTTCGAAGCCATCCTCTTATTTTCA
CCATACAGCTCCCTGTTGGGTGCATCTGATCGTAAGCTGAAGGTTAAATA
TCATTGGATTCTTCAAGTCCTTGCTGCAATATGCTTCAATCTTGGATTTG
CTGTCATTTATTACAACAAAAATCTAAACAATAAACCCCATTTTACCTCT
TGGCATGGCAAAATTGGATTCTGGGCCGTTGCTATATCAACGTTTCAAAC
GATGGTGGGGCCATCTTTAATTTACTATAACAACCGGATTTTGAATCCGA
TGGGTACATCATTGGCCTTACGGAAGAAAGTACATGGCGTTGTCGGAGCT
CTCGCTTTTGTCTTAGGAGATGCGACCATGATTTTGAGTTTGTTTTCCAA
TTTCATGGTTAAAAATACCAGTGAGACATCGTGGTATTTCCTCTTAATCT
TGAAAACCATAATGGCTTCTGTAGTTGTTAACCAGGCTAGTTCAAAGTAT
GTCTTCAAGTCCAAGTGACTCTGTTCTCATGGCATCCGACGTTGATGGTC
CTTGGGATGGCTGAAATCGTCGTCACGAAGAAAGGGAAATCTGCTGAGAA
TTATTCTGCAAAAGACCAACCTTCTTCTTTGTTTTTCTGTCTTAAGTTTC
TGTTTATCATGGCTCATATTTTTGCATTTATGCTATGTGCTTTTATCATC
TTCCTCTCACAACCTGGGACGTTTTGGACTGTTCATGTTCGAAGCCATCC
TCTTATTTTCACCATACAGCTCCCTGTTGGGTGCATCTGATCGTAAGCTG
AAGGTTAAATATCATTGGATTCTTCAAGTCCTTGCTGCAATATGCTTCAA
TCTTGGATTTGCTGTCATTTATTACAACAAAAATCTAAACAATAAACCCC
ATTTTACCTCTTGGCATGGCAAAATTGGATTCTGGGCCGTTGCTATATCA
ACGTTTCAAACGATGGTGGGGCCATCTTTAATTTACTATAACAACCGGAT
TTTGAATCCGATGGGTACATCATTGGCCTTACGGAAGAAAGTACATGGCG
TTGTCGGAGCTCTCGCTTTTGTCTTAGGAGATGCGACCATGATTTTGAGT
TTGTTTTCCAATTTCATGGTTAAAAATACCAGTGAGACATCGTGGTATTT
CCTCTTAATCTTGAAAACCATAATGGCTTCTGTAGTTGTTAACCAGGCTA
GTTCAAAGTATGTCTTCAAGTCCAAGTGACTCTGTTCTCATGGCATCCGA
CGTTGATGGTCCTTGGGATGGCTGAAATCGTCGTCACGAAGAAAGGGAAA
TCTGCTGAGAATTATTCTGCAAAAGACCAACCTTCTTCTTTGTTTTTCTG
TCTTAAGTTTCTGTTTATCATGGCTCATATTTTTGCATTTATGCTATGTG
CTTTTATCATCTTCCTCTCACAACCTGGGACGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00005315-exon-sc0000052-1575043694:65729..65984 | TCONS_00005315-exon-sc0000052-1575043694:65729..65984 | Clytia hemisphaerica | exon |
| TCONS_00005315-exon-sc0000052-1575043694:56939..56976 | TCONS_00005315-exon-sc0000052-1575043694:56939..56976 | Clytia hemisphaerica | exon |
| TCONS_00005315-exon-sc0000052-1575043694:56099..56614 | TCONS_00005315-exon-sc0000052-1575043694:56099..56614 | Clytia hemisphaerica | exon |
| TCONS_00005315-exon-sc0000052-1510915933:65729..65984 | TCONS_00005315-exon-sc0000052-1510915933:65729..65984 | Clytia hemisphaerica | exon |
| TCONS_00005315-exon-sc0000052-1510915933:56939..56976 | TCONS_00005315-exon-sc0000052-1510915933:56939..56976 | Clytia hemisphaerica | exon |
| TCONS_00005315-exon-sc0000052-1510915933:56099..56614 | TCONS_00005315-exon-sc0000052-1510915933:56099..56614 | Clytia hemisphaerica | exon |
| TCONS_00005315-exon-sc0000052-1491911889:65729..65984 | TCONS_00005315-exon-sc0000052-1491911889:65729..65984 | Clytia hemisphaerica | exon |
| TCONS_00005315-exon-sc0000052-1491911889:56939..56976 | TCONS_00005315-exon-sc0000052-1491911889:56939..56976 | Clytia hemisphaerica | exon |
| TCONS_00005315-exon-sc0000052-1491911889:56099..56614 | TCONS_00005315-exon-sc0000052-1491911889:56099..56614 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000052 | supercontig | sc0000052:56099..65984 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR006593 | Cyt_b561/ferric_Rdtase_TM |
Blast
BLAST of TCONS_00005315 vs. Swiss-Prot (Human)
Match: C56D1 (Cytochrome b561 domain-containing protein 1 OS=Homo sapiens GN=CYB561D1 PE=2 SV=1) HSP 1 Score: 122.865 bits (307), Expect = 5.024e-33 Identity = 69/203 (33.99%), Postives = 103/203 (50.74%), Query Frame = 1
Query: 190 IMAHIFAFMLCAFIIFLSQPGTSLFSWHPTLMVLGFGLFMFEAILLFSPYSSLLGASDRKLKVKYHWILQVLAAICFNLGFAVIYYNKNLNNKPHFTSWHGKIGFWAVAISTFQTMVGPSLIYYNNRILNPMGTSLALRKKVHGVVGALAFVLGDATMILSLFSNFMVKNTSETSWYFLLILKTIMASVVVNQASSKYVFKSK 798
I+AH+ A F+ LS+PGTSLFSWHP M L F L M EAILLFSP SL RK +++ HW Q LA +C LG I ++ + PH SWH +G + + Q + G L+ ++ +A K H G + +++ T++L ++S + +WY L L A V+++Q S Y+ + K
Sbjct: 28 ILAHLVALGFTIFLTALSRPGTSLFSWHPVFMALAFCLCMAEAILLFSPEHSLFFFCSRKARIRLHWAGQTLAILCAALGLGFIISSRTRSELPHLVSWHSWVGALTLLATAVQALCGLCLLCPRAARVS----RVARLKLYHLTCGLVVYLMATVTVLLGMYSVWFQAQIKGAAWYLCLALPVYPALVIMHQISRSYLPRKK 226
The following BLAST results are available for this feature:
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