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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00056976 ID=TCONS_00056976|Name=TCONS_00056976|organism=Clytia hemisphaerica|type=transcript|length=2403bp
CGAGGGAAGAGAAAGCAAAGTGATGTTTTGTAACTGCCacaaatatgttt
ttatttttgtcaagatattTTTGACGCTAATATTCTGTCTACAAGTGCAA
GGTAATGTTGACGCATTGGAGAAAGTTTCAACAAGATCTCCTCCACCAAG
AATGGCGGTTGTGGCGTACCTACCAAACAATTTGCAGAAAATGTACGAGT
TCAACATGATGTTGTACGGATCATGGAAATATGTTGAATCTCATCAACAG
ATCTTCTTCAATCAGAATCCTAAACCGTCTATCAATCTCATCGACCTGAT
TGTGTTTTTTGACCAATCATTTGACGAACAGATACCAGTTGATTGCCAAA
TTTTCCGTTACCATGGAAAAGAGGCTACTCGTCACCAACTCTTACAAAAC
GACGCTACCTTGAATTCATTCGTcgataaaaacaacaacaaagatGCTTC
CGAATTTCGTCTTCAACTTGATCAGCTGAAGAATACAAATCATACGAAAA
CACGGATTTCCGAAGATGAAATCATGTTTCGGTCAGCTTGTTGGAGAATA
CCTCAATCGAACAATACGTTCAAAGATGGATTCTCTTCATTGGATAATCT
CTTACCGTTTCTTAGAGAAGGTATCGACGAAATGTTTGAGGAATATCAAT
ATATTCTCAATGTAGACACTGATTCGATACTGACACCAGGGCTATGGACC
CTCAATCTTAATCAAGTGGTCCTCGCATCTGGTGTTCAACAAGAATGCCC
TGCAGATCGTAAATTATTAACCTTACAAGCTGCAACGAAAATTGGTTTAG
AGTTTCCCCTAGGTAGACCTTGGAcaacattttcaatatttggtGAAACC
AATATCATCCTGCCATTTATGTTTGAGGTTTACCGACTTTCTGTTTTCCT
TATGCATGATGACTTGAATGAATGGAATGCAAAACACGAAGAACAATCAC
ATAAACAGTTGCAAATAGCTAAAGACCTTGTAATATATCAAGCAGCAAAG
ATGTTACAGATTGAAAATAAAGGAAGGTTTCGCATTCTAGATTCATTGCC
GTGTTCCAGAAGCCATCAAAAAGGTACACGAAGTGTTCTGAGCATTTCTG
TAAAGAAGGACCATAAATGTCGTTTCGATAAAAGTCAATTCTTTAACCTT
CTCGCGAATCTTCAAACGATGACCCCGGgagagaaaaaagattttttaag
ccATGCTAAAGAAGAATGGAATCACGAGCAAGCCTCAAAACTGAATCTTG
AAAACTATGCCAAATTTATCGCGTATAAGTATGCAGCGATTCATTTTAGT
gagatctttaaattctgaTTGCAGTCTCTGATCATCGTCGAAATTTTCCT
ATTCCCAAGTtaagcaatatttttttaactcaaaaatATTCTGACGATAA
CATAATGTGTCATTTTTGCGCCAGTATGGTAAGTGGCCTAGCTACAACTT
GCACTTTTTTTGCCTGCAGATATcgttaaaaaaaagattcaaagtatgaa
aaatattggtGGTGAACCACAGTAACACGGGCCCCTAACACCATTGTGTC
GCAGACCCCCTGGGCcctagccccactggaaaatttcgtccccggtagaa
AAATACGTTGGAATTCACTGGGAAATTGTATTTGagttcatccccattcg
aaatctaatgtttaaaaattacactccaaaaccaATCGCACTggtttttt
taaccttggaacaatggaatttctatccccattggggtTTCAATTTTATC
cacactgaggaaaaaagttccaccgggactgtgagacaCGGTTGTGCATT
ACCAAGGGCATCAAAAGGCTCCATAAACCTCCTTCACAGTGCAAAGGTGG
GTTTGATGAAAGGTATTCAAATTGATGAAGGACCATTCGCAGGTTCGCAT
AATGGAAAGGCTTATACCGGTTTATACTGTATTAGGTTCGAACAATCTTT
TACTCAATCAAGGTGCTTTAGTCATTTTAAACTATTTCAGATTATTGAAA
ATAAGCATTATTAATGACTTTCAGCCTCGTTTAGAGGGTCCCCAATTCCA
CAGTGCcgtcaaatatttcttgatttCTCAAGAAATTGTCGAATTCTTTT
ATTCAAATAGATTGGTTTTGAGTAGAAATTAGttattgattttcattttt
gaaaccCCTTTTTTTAGACTTTTGGGGCTCATGACGTAAATTTATGTATT
GTCTCTATGTAAATAATAAAGAAACGGAGAATACTTTTTcggattatttt
tttaataaattcacacatattacacgttttttataagaacataaggcttc
gctggcataaatgttaagaacaagttaagaacatttaaaggctttgcgga
ctcaaaAATACGctatttttttaggaaaatggtcaaaaatatttacaaaa
tag Run BLAST on NCBI transcript from alignment at scaffold_284:1341205..1344964- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00056976 ID=TCONS_00056976|Name=TCONS_00056976|organism=Clytia hemisphaerica|type=transcript|length=3760bp|location=Sequence derived from alignment at scaffold_284:1341205..1344964- (Clytia hemisphaerica)
CGAGGGAAGAGAAAGCAAAGTGATGTTTTGTAACTGCCACAAATATGTTT
TTATTTTTGTCAAGATATTTTTGACGCTAATATTCTGTCTACAAGTGCAA
GGTATACAGTTTTCAACGTTCTACCTTCTAGAGGTTGGAACTTTTAATGT
GATAATTTTATGTGAAAAATATAAATATATAGCTTAAGTCAGGAGGCTTC
GTAGAACTGCTATACCAAAGCGAGTACCAAAGTACCAAAGATGAAGTTAC
TAGCATAAATGGATAAAATGCTCAATTTTTTTATTTCTCGTGTTTAATCT
TTATTTTCAACATTTTTAGAATGATTAATTTGAACAAAGATTATAGTATA
TAATTTTTGAAGAATTGGTCGAAAATGCCGACAACTAAAACAAAGATTAA
AAGTCCCAGGTGGGGGGGGGCAAATTGGGTGCTGCGTATGTGCGAGTCAT
AAGGGTTCCTTTTTCAAATCCTCGAAAGTCTCTCAAAGGGGTACAAAAAC
CATTAAAAAGCAAGNTGTTTTGTAACTGCCACAAATATGTATTTATTTTT
GTCAAGATATTTTCGACGCTAATATTCTGTCTACAAGTGCAAGGTATACA
GTTGTCAACGTTCTACCTTCTAGAGGCTGCAACTTTTAATGTGATAGTTT
AGCCTTTTACTTAGGCAAATTGGGTGCTGTGTATGTGCGAGTCATAAGGG
TCCCTTTTTCAAATGCTCGAAAGTCCCTCAATGGGTTACAAAACCAAAAA
AAAGACAATTGAGTCTCTTTAAGGGTCTAAAATCGAAATTTCCTCTCCCA
AAGGGTCATGATTTTCCAAAATTTGGACAAAAAACGAGCGAAAATGGACA
AAAATTGTCAAAAACGTCGAAATTCAGTCTTTCAAAGGGTTGATTTTCGA
TTTTTGGCTCGAATATACCCGTCACCTCGCAAACTTAGTAGCCCCCGCCC
GGGGCGGGCTTAAAGTGAACGACATGACTTTAATACCTTCTTAAAATCCC
TTTGTAAATATTTTTCCAGATACTTGTCTTTTTTTTTTAATTTAGCAGGT
AATGTTGACGCATTGGAGAAAGTTTCAACAAGATCTCCTCCACCAAGAAT
GGCGGTTGTGGCGTACCTACCAAACAATTTGCAGAAAATGTACGAGTTCA
ACATGATGTTGTACGGATCATGGAAATATGTTGAATCTCATCAACAGGTT
GAATTTGCGCGCTTTTCTGGAATTCTTGATTAGGATATTACTAGTAGAGT
GGAGTTTCCTTAATTGGAACCTCTATAATTCAAATGCCTCCTTAAAACAA
GTTTTATATTTTCTTCAGTTAACAATGTCTTTTAAACCTAACTCCATAAC
TCGCAATCTCCGTAACTCGATCATCGACTGCGTGTTTGAGCATCGATGGC
TCGAGTTACGGAGACTCTGTAAAAGATTGCAAAAGTGTAACACTCTTTTT
ATCGCATACTTTAGACTATAACTAGAAAACTGTATAGGGGAATGAATATA
CCATCAGAGATAGCAGGCTCTCAATTCAATTCTAAAACCAAACCAACTAA
AAAAAGTGAGACAACTTTATGTTATACTTAAACCATTTTGATTCTCTCTC
TTTGCAGATCTTCTTCAATCAGAATCCTAAACCGTCTATCAATCTCATCG
ACCTGATTGTGTTTTTTGACCAATCATTTGACGAACAGATACCAGTTGAT
TGCCAAATTTTCCGTTACCATGGAAAAGAGGCTACTCGTCACCAACTCTT
ACAAAACGACGCTACCTTGAATTCATTCGTCGATAAAAACAACAACAAAG
ATGCTTCCGAATTTCGTCTTCAACTTGATCAGCTGAAGAATACAAATCAT
ACGAAAACACGGATTTCCGAAGATGAAATCATGTTTCGGTCAGCTTGTTG
GAGAATACCTCAATCGAACAATACGTTCAAAGATGGATTCTCTTCATTGG
ATAATCTCTTACCGTTTCTTAGAGAAGGTATCGACGAAATGTTTGAGGAA
TATCAATATATTCTCAATGTAGACACTGATTCGATACTGACACCAGGGCT
ATGGACCCTCAATCTTAATCAAGTGGTCCTCGCATCTGGTGTTCAACAAG
AATGCCCTGCAGATCGTAAATTATTAACCTTACAAGCTGCAACGAAAATT
GGTTTAGAGTTTCCCCTAGGTAGACCTTGGACAACATTTTCAATATTTGG
TGAAACCAATATCATCCTGCCATTTATGTTTGAGGTTTACCGACTTTCTG
TTTTCCTTATGCATGATGACTTGAATGAATGGAATGCAAAACACGAAGAA
CAATCACATAAACAGTTGCAAATAGCTAAAGACCTTGTAATATATCAAGC
AGCAAAGATGTTACAGATTGAAAATAAAGGAAGGTTTCGCATTCTAGATT
CATTGCCGTGTTCCAGAAGCCATCAAAAAGGTACACGAAGTGTTCTGAGC
ATTTCTGTAAAGAAGGACCATAAATGTCGTTTCGATAAAAGTCAATTCTT
TAACCTTCTCGCGAATCTTCAAACGATGACCCCGGGAGAGAAAAAAGATT
TTTTAAGCCATGCTAAAGAAGAATGGAATCACGAGCAAGCCTCAAAACTG
AATCTTGAAAACTATGCCAAATTTATCGCGTATAAGTATGCAGCGATTCA
TTTTAGTGAGATCTTTAAATTCTGATTGCAGTCTCTGATCATCGTCGAAA
TTTTCCTATTCCCAAGTTAAGCAATATTTTTTTAACTCAAAAATATTCTG
ACGATAACATAATGTGTCATTTTTGCGCCAGTATGGTAAGTGGCCTAGCT
ACAACTTGCACTTTTTTTGCCTGCAGATATCGTTAAAAAAAAGATTCAAA
GTATGAAAAATATTGGTGGTGAACCACAGTAACACGGGCCCCTAACACCA
TTGTGTCGCAGACCCCCTGGGCCCTAGCCCCACTGGAAAATTTCGTCCCC
GGTAGAAAAATACGTTGGAATTCACTGGGAAATTGTATTTGAGTTCATCC
CCATTCGAAATCTAATGTTTAAAAATTACACTCCAAAACCAATCGCACTG
GTTTTTTTAACCTTGGAACAATGGAATTTCTATCCCCATTGGGGTTTCAA
TTTTATCCACACTGAGGAAAAAAGTTCCACCGGGACTGTGAGACACGGTT
GTGCATTACCAAGGGCATCAAAAGGCTCCATAAACCTCCTTCACAGTGCA
AAGGTGGGTTTGATGAAAGGTATTCAAATTGATGAAGGACCATTCGCAGG
TTCGCATAATGGAAAGGCTTATACCGGTTTATACTGTATTAGGTTCGAAC
AATCTTTTACTCAATCAAGGTGCTTTAGTCATTTTAAACTATTTCAGATT
ATTGAAAATAAGCATTATTAATGACTTTCAGCCTCGTTTAGAGGGTCCCC
AATTCCACAGTGCCGTCAAATATTTCTTGATTTCTCAAGAAATTGTCGAA
TTCTTTTATTCAAATAGATTGGTTTTGAGTAGAAATTAGTTATTGATTTT
CATTTTTGAAACCCCTTTTTTTAGACTTTTGGGGCTCATGACGTAAATTT
ATGTATTGTCTCTATGTAAATAATAAAGAAACGGAGAATACTTTTTCGGA
TTATTTTTTTAATAAATTCACACATATTACACGTTTTTTATAAGAACATA
AGGCTTCGCTGGCATAAATGTTAAGAACAAGTTAAGAACATTTAAAGGCT
TTGCGGACTCAAAAATACGCTATTTTTTTAGGAAAATGGTCAAAAATATT
TACAAAATAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00056976-exon-scaffold_284-1575043694:1344864..1344964 | TCONS_00056976-exon-scaffold_284-1575043694:1344864..1344964 | Clytia hemisphaerica | exon |
| TCONS_00056976-exon-scaffold_284-1575043694:1343768..1343916 | TCONS_00056976-exon-scaffold_284-1575043694:1343768..1343916 | Clytia hemisphaerica | exon |
| TCONS_00056976-exon-scaffold_284-1575043694:1341205..1343357 | TCONS_00056976-exon-scaffold_284-1575043694:1341205..1343357 | Clytia hemisphaerica | exon |
| TCONS_00056976-exon-scaffold_284-1510915933:1344864..1344964 | TCONS_00056976-exon-scaffold_284-1510915933:1344864..1344964 | Clytia hemisphaerica | exon |
| TCONS_00056976-exon-scaffold_284-1510915933:1343768..1343916 | TCONS_00056976-exon-scaffold_284-1510915933:1343768..1343916 | Clytia hemisphaerica | exon |
| TCONS_00056976-exon-scaffold_284-1510915933:1341205..1343357 | TCONS_00056976-exon-scaffold_284-1510915933:1341205..1343357 | Clytia hemisphaerica | exon |
| TCONS_00056976-exon-scaffold_284-1491911889:1344864..1344964 | TCONS_00056976-exon-scaffold_284-1491911889:1344864..1344964 | Clytia hemisphaerica | exon |
| TCONS_00056976-exon-scaffold_284-1491911889:1343768..1343916 | TCONS_00056976-exon-scaffold_284-1491911889:1343768..1343916 | Clytia hemisphaerica | exon |
| TCONS_00056976-exon-scaffold_284-1491911889:1341205..1343357 | TCONS_00056976-exon-scaffold_284-1491911889:1341205..1343357 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_284 | supercontig | scaffold_284:1341205..1344964 - |
Blast
The following BLAST results are available for this feature:
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