TCONS_00057017 (transcript) - C. hemisphaerica

Overview
NameTCONS_00057017
Unique NameTCONS_00057017
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length331

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00057017 ID=TCONS_00057017|Name=TCONS_00057017|organism=Clytia hemisphaerica|type=transcript|length=331bp
tttttatgaaatttgttatCAGTCGGGCCTATACAATAGATTAGATAAAT
TAGCAAATCACATTTAAGAGCAGGATATCTATTATATTTGAAATCCTact
ctttcttataaaaaaaacaactaattTGGCTGAGAACCCAGCTGTTCTTA
TGTTTTTAAAACTTCCAGGCTAAAATCCTTTTATTCTTGATTAAAATTGT
GCTCGTTTTGTTTGCTAAGGGCTTAAGTTACcctgagttttcaaagaata
tattaacctctgaagaccaataatagaaattttatcgcgtatgtgtcaat
ctaatcactgtagaaagaatcaaagatgaag
Run BLAST on NCBI

transcript from alignment at scaffold_284:546255..546585

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00057017 ID=TCONS_00057017|Name=TCONS_00057017|organism=Clytia hemisphaerica|type=transcript|length=331bp|location=Sequence derived from alignment at scaffold_284:546255..546585 (Clytia hemisphaerica)
cttcatctttgattctttctacagtgattagattgacacatacgcgataa
aatttctattattggtcttcagaggttaatatattctttgaaaactcagg
GTAACTTAAGCCCTTAGCAAACAAAACGAGCACAATTTTAATCAAGAATA
AAAGGATTTTAGCCTGGAAGTTTTAAAAACATAAGAACAGCTGGGTTCTC
AGCCAaattagttgttttttttataagaaagagtAGGATTTCAAATATAA
TAGATATCCTGCTCTTAAATGTGATTTGCTAATTTATCTAATCTATTGTA
TAGGCCCGACTGataacaaatttcataaaaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035912XLOC_035912Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057017-exon-scaffold_284-1491911889:546255..546585TCONS_00057017-exon-scaffold_284-1491911889:546255..546585Clytia hemisphaericaexon
TCONS_00057017-exon-scaffold_284-1510915933:546255..546585TCONS_00057017-exon-scaffold_284-1510915933:546255..546585Clytia hemisphaericaexon
TCONS_00057017-exon-scaffold_284-1575043694:546255..546585TCONS_00057017-exon-scaffold_284-1575043694:546255..546585Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_284supercontigscaffold_284:546255..546585 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0.358689	1.27496	0.309883	0.391809	0.632439	0.412786	1.16879	0	0.498911	0	0	0.191259	0.714168	0	0	0	0.388733	0.906848	0.461297	0.337134	0	0	0	1.06164	1.67077	2.23474	1.05263
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00057017 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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