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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00053168 ID=TCONS_00053168|Name=TCONS_00053168|organism=Clytia hemisphaerica|type=transcript|length=3574bp
GGCAGGGTGATAGAGAAAGTAGGTGGCAAGAATGTCCCCCCGATGTAGAG
TGCAAAAGTgttaatagtgcaattaacgattaatcacacTCCTCTAAACC
TATCAGATTTGAGTAATTTTGCACAACTGACGATTACATAGTTTTATACT
CTTTCCAAGATTTTGATTCCTAAAAGTTTGCATTTATTTAACTGATTTCt
ttctttccatttttagcTAAGAAAATATGGAATTAGTTACCATAATCCAT
AATAATCGTCCACTTCAACTTCCAAGACTCTTTTTAAGAGCAGATGATCT
TGCTGCATGTTTTGCTGTTGATCGGGAAGGACTACACTTAAAGTGTATAA
CTAACAATGGGgaaattaaaaactttattcCTCTTTCTGATGGAAAGTTT
GAACTTGATCCCACCATCAACAAATACAACCTGGTTGCAGTAAATAATGA
TACTCACAGACTCATTAATAACGACAGTAGCAGTAGTAGCAGAACTCCAA
ATGTTAGGTATGGCCATGGTTCAATGAACAATGAAAACAACGAAATGAGA
ACTCCTACCATTGCATATGGTCGGAGAGGCAATGCTGGTCTGAGAGCTGT
GCCGGGTTTTAAACGAAAGTCAAACTCATCTCCTGTTTTACCCGTTCCTC
TTGggaggaaaaaaaaagaagaaacaaaatcgaaaaagaaaatttcgatt
tgGTTGAGTGgaataaaaaagattgaaaaggaCCGTAATCgtgaattttt
tcatcaagaagACTTACGTAACAAGGAACCTGTTAAATTTGAACCCTACC
CTTTCTATGAAGTTCCGGTTTGTTTGGAAGAAATAAGTTGCAAGGAACAG
GTCAATGTAAGATCCATAATTGGAGAAATAAGACGACAAATAGGAGGCAT
GGATTATGTGATAACTGATAAAAAAGGCAACCCAATAAGGGATATGCCAA
ACACAAGGGGTGCTGAAAATTGGGTTGGAAATAAATACATAAGAGCAATC
GATGCAATCGCATACAAGAAATGGCGACCAGCAACATTTGAGCTCATCAA
AACAGATTATGAAATATATTCTTCAAGCTCAGATTCAGAGTTCGGAGACA
TTCCACCCCCACCATCGCCTTCATTTTCTGACCTTCACTTTTTGAACATC
CAATCAAGCACTAACTCAAGTTCGAGCTCCACTAGCACTACAGTAACCAA
CTCACCATCCACCAATGTAATTGAAACTTCAACAACTCAAGTTGCTTCTT
CGTCAACACATGTCTCTTCTACAGCGATGCAAAATCAATCATATGTTTCA
AACAGAGACTTACTGGCTGAGATTGAACGCTTAGAAGAAATTAACAACAG
AATTGAAAGCAAAATAGACCAGTTGCCAACCTTGCAACCAGAAACCTTGC
AACCTGAAGTCTCACAACCAGAAGCAGTTGTTTCCAAAGCAGATGTTAAG
GAATTGCTCACTTGTCCCATATGCACTTGTTGCAATTTCGACATTGTATA
TTGTCATACCTGTAATCAGTTTGCAGGCTGCAAAGATTGTATTTATCGCG
TCGATTCGTGCCCGCTTTGCCGGGCTAGTTTTTCCATCACTTGTGATGGA
TGTTCCAATGAAATCAATTTCCGCCCAAAATCGATCACGATTCCCGGATT
ACGCGATATTCTGGAAGAATAGTCTTAGAATGCGCTCTATTTTGAAAGTA
CATTTTGAGATTTATTTTTAAGAAGAAAGATTGCCATATTTAGATATTTT
ACGTTTTACTTTAGCTAGCAGacgtttaaatttgaaaaacatcTAAAGGC
TATTGTCAGTCGTCCAGGTTTTAAGCATTTTTATGCACGGCTAAAAGGGT
ACAAAACTACGTTTGAAGATTTTTATATTTAATAcattcattttatgttt
ttaaaaagaaaaagattttgttgtgaagactttgttataatttttatttc
agaacTTTTACtcatattattttattatttacttGTATTCATTATTGATC
CACTTTAAGCTAAGGGGACACGGAAACAAATCTTCTAGCGATTgcaacaa
taaaaatttttgttgcAATCGCATGGATATGTTTCATTGTGTTCCCACAT
CAGATATCGCTATTTTGCAACATTTTCCGCTAGATGTTTTTGTTGCagca
acaaaattttcatgttgCAATTGAGAATTATACCCTCGTGTCCCCTCACC
TTGAGAAgattttttgcaacatttttttattttacccaATCAAAGTCGTT
TATACAACTCAAAACAAATTATGACATAATCTTCCCATTTTTAACACGCA
AGACATGAGTTCAAAATGGTGGAGTtgctttgttttcatttttatgattt
tatttcGTGTGCTAGGCCTATACGACacggtgtaaaattttattgcGATT
GCgacaatttgtttttgttgcaattgcacaaaaaaaatttccgtgTCCCC
TTAGGtttaaggtatttttttttaaagacactTAGGGTTTTAACTGTGCT
ATTGATATTGTATTTGCACACAAATTACCTTTTACAGTTCAgtcatataa
aaaatatatctgCTTTTACCACTGTGTACGAGAACCTATTTTGTTCCGTT
AGTCCCTACAGTATTAGCCACTACATTATAATTCTTAGTCTTGTCAAGAG
TTAATTCTTAATGTGAGCAAAGCTTTTCAGGTTACTAAAATTTGACGTCT
GAGCTGGTCTGAGCgtctcttttttataaaaaaaacactttgtTTCCGAC
GAGTTTCACCCCTAACGTTTTAGGAGTTTTTATTATGTGTAGAGTTTTAA
TCTCTTTTGATATTTATTGATTCATTGATCACAAGTTTATTATTTGTGTA
GACTTTTATCTCTTTTgatatttattgatttattgatcACAAGTTTATAT
TATTTGTGTAGAGTTTTAATCTCTTTTgatatttattgattttttataag
aaatatacgtattatttattttgtaaaagtttAGGCTATTTTTATGTTGG
AGTATCTGACATATTATACATCAAAAGTTCCCAAATCTTACGTAGAATAG
GAATTTCCATGCTTAGCAAGGTCAAAATCGTATGGAATGGGCCAAATTTG
GGCCCAGAAAGCCAAAAAAGGCCTAAAATTATTATCCCCTCCCTGTACAA
GTCGAATTTTGAAAGTCTGAAACCATGCCATTTTCTGATAGTACTCATTA
ACATTTCGTGAAACCTTCCAGAaggtgctgacgtcagcaacgAAATGAGC
ATTTTTGGACCTAAAATCATCCAAAACTTGGTTCCAGGTGATCAAAACct
aacaaatgaccccattttttCATCAGCTTTTCGATTTGAATCTGATGATA
ACATCAAAACCCGATTTTCAGACTTTCGAAATTCGACTTGATAATCGTGT
TTAGGCCTTCTAGactcaaattcttttttcttgcttgagccTTATTCTCA
GCTCATGGACTAGTAGGgatttttcagatttcttttttccctttaGCTCG
AGTATGGCATTAttagtttttcttattttacttCTGATTAGGCTAGTTAT
CTTATGTTTTACTTCGTATTTTAT Run BLAST on NCBI transcript from alignment at scaffold_226:212629..216917- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00053168 ID=TCONS_00053168|Name=TCONS_00053168|organism=Clytia hemisphaerica|type=transcript|length=4289bp|location=Sequence derived from alignment at scaffold_226:212629..216917- (Clytia hemisphaerica)
GGCAGGGTGATAGAGAAAGTAGGTGGCAAGAATGTCCCCCCGATGTAGAG
TGCAAAAGTGTTAATAGTGCAATTAACGATTAATCACACTCCTCTAAACC
TATCAGATTTGAGTAATTTTGCACAACTGACGATTACATAGTTTTATACT
CTTTCCAAGATTTTGATTCCTAAAAGTTTGCATTTATTTAACTGATTTCT
TTCTTTCCATTTTTAGCTAAGAAAATATGGAATTAGTTACCATAATCCAT
AATAATCGTCCACTTCAACTTCCAAGACTCTTTTTAAGAGCAGATGATCT
TGCTGCATGTTTTGCTGTTGATCGGGAAGGACTACACTTAAAGTGTATAA
CTAACAATGGGGAAATTAAAAACTTTATTCCTCTTTCTGATGGAAAGTTT
GAACTTGATCCCACCATCAACAAATACAACCTGGTTGCAGTAAATAATGA
TACTCACAGACTCATTAATAACGACAGTAGCAGTAGTAGCAGAACTCCAA
ATGTTAGGTATGGCCATGGTTCAATGAACAATGAAAACAACGAAATGAGA
ACTCCTACCATTGCATATGGTCGGAGAGGCAATGCTGGTCTGAGAGCTGT
GCCGGGTTTTAAACGAAAGTCAAACTCATCTCCTGTTTTACCCGTTCCTC
TTGGGAGGAAAAAAAAAGAAGAAACAAAATCGAAAAAGAAAATTTCGATT
TGGTTGAGTGGAATAAAAAAGATTGAAAAGGACCGTAATCGTGAATTTTT
TCATCAAGAAGACTTACGTAACAAGGAACCTGTTAAATTTGAACCCTACC
CTTTCTATGAAGTTCCGGTTTGTTTGGAAGAAATAAGTTGCAAGGAACAG
GTCAATGTAAGATCCATAATTGGAGAAATAAGACGACAAATAGGAGGCAT
GGATTATGTGATAACTGATAAAAAAGGCAACCCAATAAGGGATATGCCAA
ACACAAGGGGTAAGTTTGGGCTAAATCAGGCTAAATGACTTTGGAAAATT
TAAGCAGTAATACAATTTTTGGGTCTCATCAACCCCTTATACACTAAAAT
ATTTTTTTGCCTGGCTTTGTACTGTTTTTTTTTTTGTAACTAAATTTCAA
CTCTAGTCACCAAGCCTGTTCCTTTAATTACATTCCAGCCTTTTCTCAAT
TTTTTACTACTATATAGGGCTACTTGCATTACAACAATATATTATTGGCC
CAATATATTGCTGTAGTTTAAGTTGCCCTTAACAGGGCTTTTCCTTTCAT
TCAACCAAAAGTATTGGACCTTAATGATGGACAAATACTTTTGTGTCTCC
TTTTCTTGGGAAATATTGGGTAATAATCAACTTTTTGGGGTTAATTCTCA
AAATTGCATCAATAAAAGTTATTTCTGACCAACCATCCTCCAAACAAAAC
CTAAGCAAACCAACATTTTTAAGTCCTTATATTTATGGGATTTATTTCAG
CGTTTTTCTCTTCTCTCTATTTTCAATTGTTTTTGACTGTCTTTATAAGG
TATGTCCAATCAACTACTACTTTTGTAGCAAGAAAATGTTGTGGTTTTTG
GAGCTCGACCGCAAAACCGTGAAATTTTCATGCAGTAAAAAAAGAACAAT
CCTACCTGCCCCTACAGCAAAAATTGTCAATTTGGGCTGAATTCATTATA
ATTTTCACATTATGTTTTATCTAGGTGCTGAAAATTGGGTTGGAAATAAA
TACATAAGAGCAATCGATGCAATCGCATACAAGAAATGGCGACCAGCAAC
ATTTGAGCTCATCAAAACAGATTATGAAATATATTCTTCAAGCTCAGATT
CAGAGTTCGGAGACATTCCACCCCCACCATCGCCTTCATTTTCTGACCTT
CACTTTTTGAACATCCAATCAAGCACTAACTCAAGTTCGAGCTCCACTAG
CACTACAGTAACCAACTCACCATCCACCAATGTAATTGAAACTTCAACAA
CTCAAGTTGCTTCTTCGTCAACACATGTCTCTTCTACAGCGATGCAAAAT
CAATCATATGTTTCAAACAGAGACTTACTGGCTGAGATTGAACGCTTAGA
AGAAATTAACAACAGAATTGAAAGCAAAATAGACCAGTTGCCAACCTTGC
AACCAGAAACCTTGCAACCTGAAGTCTCACAACCAGAAGCAGTTGTTTCC
AAAGCAGATGTTAAGGAATTGCTCACTTGTCCCATATGCACTTGTTGCAA
TTTCGACATTGTATATTGTCATACCTGTAATCAGTTTGCAGGCTGCAAAG
ATTGTATTTATCGCGTCGATTCGTGCCCGCTTTGCCGGGCTAGTTTTTCC
ATCACTTGTGATGGATGTTCCAATGAAATCAATTTCCGCCCAAAATCGAT
CACGATTCCCGGATTACGCGATATTCTGGAAGAATAGTCTTAGAATGCGC
TCTATTTTGAAAGTACATTTTGAGATTTATTTTTAAGAAGAAAGATTGCC
ATATTTAGATATTTTACGTTTTACTTTAGCTAGCAGACGTTTAAATTTGA
AAAACATCTAAAGGCTATTGTCAGTCGTCCAGGTTTTAAGCATTTTTATG
CACGGCTAAAAGGGTACAAAACTACGTTTGAAGATTTTTATATTTAATAC
ATTCATTTTATGTTTTTAAAAAGAAAAAGATTTTGTTGTGAAGACTTTGT
TATAATTTTTATTTCAGAACTTTTACTCATATTATTTTATTATTTACTTG
TATTCATTATTGATCCACTTTAAGCTAAGGGGACACGGAAACAAATCTTC
TAGCGATTGCAACAATAAAAATTTTTGTTGCAATCGCATGGATATGTTTC
ATTGTGTTCCCACATCAGATATCGCTATTTTGCAACATTTTCCGCTAGAT
GTTTTTGTTGCAGCAACAAAATTTTCATGTTGCAATTGAGAATTATACCC
TCGTGTCCCCTCACCTTGAGAAGATTTTTTGCAACATTTTTTTATTTTAC
CCAATCAAAGTCGTTTATACAACTCAAAACAAATTATGACATAATCTTCC
CATTTTTAACACGCAAGACATGAGTTCAAAATGGTGGAGTTGCTTTGTTT
TCATTTTTATGATTTTATTTCGTGTGCTAGGCCTATACGACACGGTGTAA
AATTTTATTGCGATTGCGACAATTTGTTTTTGTTGCAATTGCACAAAAAA
AATTTCCGTGTCCCCTTAGGTTTAAGGTATTTTTTTTTAAAGACACTTAG
GGTTTTAACTGTGCTATTGATATTGTATTTGCACACAAATTACCTTTTAC
AGTTCAGTCATATAAAAAATATATCTGCTTTTACCACTGTGTACGAGAAC
CTATTTTGTTCCGTTAGTCCCTACAGTATTAGCCACTACATTATAATTCT
TAGTCTTGTCAAGAGTTAATTCTTAATGTGAGCAAAGCTTTTCAGGTTAC
TAAAATTTGACGTCTGAGCTGGTCTGAGCGTCTCTTTTTTATAAAAAAAA
CACTTTGTTTCCGACGAGTTTCACCCCTAACGTTTTAGGAGTTTTTATTA
TGTGTAGAGTTTTAATCTCTTTTGATATTTATTGATTCATTGATCACAAG
TTTATTATTTGTGTAGACTTTTATCTCTTTTGATATTTATTGATTTATTG
ATCACAAGTTTATATTATTTGTGTAGAGTTTTAATCTCTTTTGATATTTA
TTGATTTTTTATAAGAAATATACGTATTATTTATTTTGTAAAAGTTTAGG
CTATTTTTATGTTGGAGTATCTGACATATTATACATCAAAAGTTCCCAAA
TCTTACGTAGAATAGGAATTTCCATGCTTAGCAAGGTCAAAATCGTATGG
AATGGGCCAAATTTGGGCCCAGAAAGCCAAAAAAGGCCTAAAATTATTAT
CCCCTCCCTGTACAAGTCGAATTTTGAAAGTCTGAAACCATGCCATTTTC
TGATAGTACTCATTAACATTTCGTGAAACCTTCCAGAAGGTGCTGACGTC
AGCAACGAAATGAGCATTTTTGGACCTAAAATCATCCAAAACTTGGTTCC
AGGTGATCAAAACCTAACAAATGACCCCATTTTTTCATCAGCTTTTCGAT
TTGAATCTGATGATAACATCAAAACCCGATTTTCAGACTTTCGAAATTCG
ACTTGATAATCGTGTTTAGGCCTTCTAGACTCAAATTCTTTTTTCTTGCT
TGAGCCTTATTCTCAGCTCATGGACTAGTAGGGATTTTTCAGATTTCTTT
TTTCCCTTTAGCTCGAGTATGGCATTATTAGTTTTTCTTATTTTACTTCT
GATTAGGCTAGTTATCTTATGTTTTACTTCGTATTTTAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00053168-exon-scaffold_226-1575043694:215959..216917 | TCONS_00053168-exon-scaffold_226-1575043694:215959..216917 | Clytia hemisphaerica | exon |
| TCONS_00053168-exon-scaffold_226-1575043694:212629..215243 | TCONS_00053168-exon-scaffold_226-1575043694:212629..215243 | Clytia hemisphaerica | exon |
| TCONS_00053168-exon-scaffold_226-1510915933:215959..216917 | TCONS_00053168-exon-scaffold_226-1510915933:215959..216917 | Clytia hemisphaerica | exon |
| TCONS_00053168-exon-scaffold_226-1510915933:212629..215243 | TCONS_00053168-exon-scaffold_226-1510915933:212629..215243 | Clytia hemisphaerica | exon |
| TCONS_00053168-exon-scaffold_226-1491911889:215959..216917 | TCONS_00053168-exon-scaffold_226-1491911889:215959..216917 | Clytia hemisphaerica | exon |
| TCONS_00053168-exon-scaffold_226-1491911889:212629..215243 | TCONS_00053168-exon-scaffold_226-1491911889:212629..215243 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_226 | supercontig | scaffold_226:212629..216917 - |
Blast
The following BLAST results are available for this feature:
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