|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00053111 ID=TCONS_00053111|Name=TCONS_00053111|organism=Clytia hemisphaerica|type=transcript|length=1027bp
GCGCCATCCCCACACACCCCCTCCACGCCCTGTGCGAAAAAGGGAGGGCG
TACTTGATTCGAAGTATGGCGGAGTTATCGGCTACCGGTATTTTAAAAAA
CTGGATTGTGGGCCGCCCGCTTGAAGCTTCAGAATCAACGTGAACCGATT
CTTTTTACGAAGGGTTTACTCGTGTGTGCAGAGGCCAGCCAAGATGTCGG
AACAGACAGAAAAAGCCTACCAAAAACAACCCACTATCTTCCAAAACAAG
AAACGTGTTGCTGGTAAAGTAACAAAAGCCAAAGAACAACGTTTTGTCAA
ATCTGTTGGTTTGGGATTCAAAACTCCAAGAGagGCCATCGAAGGTACTT
TCATCGATAAAAAATGTCCATTTACCGGAAACGTTAGCATCAGAGGACGT
ATTTTAACTGGAATTgttcaaaacatgaaaatgaagAGAACTATTACCCT
CAGACGTGATTACCttcatttcatcaaaaaataccAAAGATTCGAAAAAC
GACACAAAAATCTTGTTGCACACATGTCACCCTGCTTCCGtGACGTACAA
CATGGAGATTTAGTGACAGTCGGTCAATGCCGTCCACTCAGCAAAACTGT
TCGATTCAACGTACTAAAGGTCGCCAAAACAAACAgtgcaaaaaaatctt
ttgagaaattttaaataattatCAAAGATGTTAAAAACCCTTGAATTGCT
TGTCTATTCTTTTGATTCATTGGATCCTTTaatttaacctttgttcgtct
gttaccagcttttctcaggattggctatGGCCCATTGTTCTTTTCTGATT
CAAGTGAGggagcccaattttcaaaaaaaaatatttttggggaaatttca
ggggggtacagaggcagggtactaatagtagaggccactatgtcttcccg
tgtgcagcagcttgtgcaaagggattttatgattgaatattgttccttga
atgtagaagatcaaaatttgagaggtggggccgggtgtgactactcgttg
ccatggaaactgacgtcattggttact Run BLAST on NCBI protein sequence of TCONS_00053111-protein >TCONS_00053111-protein ID=TCONS_00053111-protein|Name=TCONS_00053111-protein|organism=Clytia hemisphaerica|type=polypeptide|length=156bp
MSEQTEKAYQKQPTIFQNKKRVAGKVTKAKEQRFVKSVGLGFKTPREAIE
GTFIDKKCPFTGNVSIRGRILTGIVQNMKMKRTITLRRDYLHFIKKYQRF
EKRHKNLVAHMSPCFRDVQHGDLVTVGQCRPLSKTVRFNVLKVAKTNSAK
KSFEKF Run BLAST on NCBI transcript from alignment at scaffold_226:175730..183266+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00053111 ID=TCONS_00053111|Name=TCONS_00053111|organism=Clytia hemisphaerica|type=transcript|length=7537bp|location=Sequence derived from alignment at scaffold_226:175730..183266+ (Clytia hemisphaerica)
GCGCCATCCCCACACACCCCCTCCACGCCCTGTGCGAAAAAGGGAGGGCG
TACTTGATTCGAAGTATGGCGGAGTTATCGGCTACCGGTATTTTAAAAAA
CTGGATTGTGGGCCGCCCGCTTGAAGCTTCAGAATCAACGTGAACCGATT
CTTTTTACGAAGGGTTTACTCGTGTGTGCAGAGGCCAGCCAAGATGTCGG
AACAGGTTTGTTGCTTTACTTGTTATAAGCCCAATTATATGGATTTTAGC
ATATTCCAGTACCAGTTTGAAATTcttctttcacttttttaatTCTGTGT
GGCATCCGTCCAGTTGTTTATGCCCGAACGCCTAACCTTGGTCATCTctt
aaatttgtcaaaaatgtAAATCAGAAGAGTATTTGTTTCtaacattgggc
tcttccagaaaaaaattgatataggGGGTGGATGACgggaattttcagat
aaaaaaagcaatcggaaatccagtcaatttttcaaagtgcttcGGAAACT
ctgctcaattttttatttgaacccttggaaattccaccacataatttgtc
aaagttttgataAAGGTATtggaaattccagatttttccaccaaaaaatt
gattttgtatcggaaatccaggaatttcaaaaaaacattttgacttGGAA
TTCCGCTGTCGTCCACCCCCCTATAATGGACTTaaactggaagagcccat
tacatAAATAAATTAAATCTAAAATACTTCATTTTATATCAGTATAGTca
taaaggaaaattttgaattccTAATTTGATAGTCATTTCCTAACTACAGT
TAGAGCACATTGGAGGGTCTTGAACTCCCAAAGTTTTCTTCCTAAACCTT
GTCTATCTATATCTGTTTTATCCCATTCAACCTGTTATCCATGTTATtaa
taaacaaagaggaatgaattcGTAGGGGTGGACAAATTAACCAGGTCTGG
ATGTGGACGGCgaagtaaatattttttatgaaacttgtttttttttgtct
attCTTAGTAACgtaggattctttagattaTCCCCTCGAACCTACGATGG
TAATCACACTGCATACAATACACCTTTCcagtaattcaaatttctcagaa
aggGTCCATGAAAATCTCTATCACCAATCGTCACTTCTCTCACTATCTCA
AAAATCGCATTAGGAACTCTATTTTTCTTGATATCGTGTTAACCCTGCTG
AAGTTTTACTAACAATTAATTCTTTATCCTTTAACAAATCATCTGGCCCT
CATAGCATTTCTCACAAAATTCTTTGTCTTCTAAAGTTTGATCTCTCTGG
AcccctttcttttctttttaacctttcattTGAATCTGGTTGTTTTCCCA
CAATGCTTAAACTCTCAAAAGTTATTcccgttttcaaaaacaaaggctcT
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCATC
CATACCTTACTTAATATTATTGAACGTATTCGGAAATCTCTTGATGATGG
TAACTTTGTGTGtggtgtttttgttgatttgcaaAAGGTTTTCGATACTG
TTGATCATTCTATTCTAATTTCAAAACTCGACCACTATGGGGTTAGAGGA
AAGCTAATGACTGTTTCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCTAGG
ACCTCTCTTATTTTTAATCTATATTAATGATCTTCACAATGCAATCTTTT
CaagtgaaacttttcatttcGCTGATGATACCCATATTTTACATTTGAAT
GATGATCTTCTTTCCCTTTGCAACAGAGTCAATCGTGACCTAAGATCCCT
CCAAACTTGGCTCAAAGCCAATAAAATATCCCTTAATGCtggaaaaacag
aatttttaaattttcagacactgtcgaaaaattcttccttttgtcccttt
tcttaaaattggaggtaagaaaatttttcaaagttcaaaCATCAAATATC
TTGGCGTTTTGATTGACATGCACCTCAACTGGAAAGCCCACACCACATCT
TTATCAGCTAAACTTGCCAGAGCAAATGGTATTATATCTANNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNTTACCCTGAGCTCATCTGATTTCAGTTTTGTTAAATCTCTCGCC
CTTACTCACTGTCTTGGGAGATACTGAGCACACCCCTCCCCtaccaagaa
agtttagaaaactttattttaatttattcttcattagataaaaaaaattc
ttaaaaatataaatatttataaataatttaCAAAGTGTTATAAACGCAAT
CTGTACTTAGGTGGCCTCATCTTTTTGATTAGCTAgactataaggcggtc
tccctccatatattttttgtgcatatcaccacttgtatcttttttgtagt
gttaaatggtaaataaatacttacttacttacttacttacattCCACCAT
TGtgtaaaaattgtttgggaTGTAAACAAATGTAATATTGCCTACAAGGg
gttatggaatttttttttttgatagcaatccttttttggaaaaagttttc
tGGGTGGTATAAAATATGAATAAAATAATATGAGAGGATTTTGATTGACA
GAActtatgtaagaaaatattaaaatcaactTTCCTTAGGAAATGCAGGC
AAAAACCAGAGAGCATCAAAACAATATGTTCATCTTAtcttaggcggcaa
tcacaaatattttcgtttcgcgttgcccgaccgactctcgaaaattgagt
agaattgagtctgtgagtcggtaaatttgtcggactttttctgccgatga
cgtttccttcgttcaaaaattttattaatgcCGATTTTTTGCAAGCGAtt
ctagcgcattcgcggcattttgactttgtttatcattacatgcgccattt
tgggttGTTATGGAAACctgaaaatttttacgaccgaccgactcactttt
tagacccaacgaggacgcgaaatgaagatatttgtgattgccgccttatt
aTTGTACGCTTATTGCCCATTCAGATCAATTTTTAGTTGCGCTGGGTTGC
GTATCATGCGTTTAAATCTCAAACATGAAAAGTTAAAAACCATGAAAAGT
AtgtaataaatatcaaaaacaaGAATACCTTAGTAAAATATTTAAAGATA
AGACAAAAGTAGTATAATCTAACAggttgttcatttttttttttttttga
tgtttggcAATGCCTTTTAGCAGAATGAATCAAGATATGAGCTAATTTTA
ACTGTTAATACAGCTTTTACCTTGTCAAGATTGAATGGATTGTGGATTGA
AAATGAATATGTGTGCCTTGCAAAATTGCACAACGATTATGATAGGAAAT
TTTATGTTGCTCTTTCAAGAACTAATTTAAATTAAATAGATGTAATATAA
TTAATAAACTTCCTTTGATGTCCCTTTGGGAATTCAGAAACTGGTTCAAT
CCTAACTCCTTTGAGAGTAAGAGAAATTTCCTTGTATGACATTTTTACAT
TTGATACTGATAACTTAACTtgtgattttttaacctttttagtCTTCATA
AAGGTGTGATATCTTAGTACAGGTCCTTTGTTCCTTCAGACTTTAGAGAT
GGAGGTGTAGGAGGTAATTCAAACGATATAactgatttttatttttctcc
atCTTCTTTTAGACAGAAAAAGCCTACCAAAAACAACCCACTATCTTCCA
AAACAAGAAACGTGTTGCTGGTAAAGTAACAAAAGCCAAAGAACAACGTT
TTGTCAAATCTGTTGGTTTGGGATTCAAAACTCCAAGAGaggtattattt
ttcttttaacctTTCAAGCTAattaaaatctcattttcacCCAAATTCTT
TATTTCCTAGCGTAgggtttttggcaaaaatttaggCTTTAAATCTAAGA
GAGGACTAAATTTAACGAAAATGGCCAGAATTTGGAAAATTCTCATTGTC
ACTCTCCTTCTTGTTGTTGTAAAAATTTCCTGGCTTGGGATCAATGACCA
TTGACGGGAActtatttttagtttaaaaaagagcatttctcaacttcagt
taagctagaatctgacaattaTGTATGtcaaactttggggcaggctggag
acttcaaaaatggtcagatttggctgaaacttGGCACACTTGATCCTCAG
GCAAATCCCTGGCAGTCGGTACCACTACATGAaaaaggcaactattgcct
taacgggaagtATTTCCCGAACaggaaggtgaaaataacctgaaaaggaa
actgtttccagattgaaaatttcatcacttttctgtttcccgttttggtc
aagaacttttcatcgtTCCCGAACAGGAAatagaatttttgtaaacaaag
cagatttttgtttcccgatcaagaaaaagtttccaaatagggaaGTTTTT
TAAATGGGAATAGGGAAAGAAGAATTAAGAAGCGATTACCCGGTGTATTT
CTTAACTACCTGGTGAATATGATTTATTTTCCCTCCTTTACAAGAGggac
aattttttaactttccaCAAGCATTTCCGGAGTGCTCAGAGGCcactttc
ccgatcgggaaactgAACTTCCCAATTTGGAAAGTGTAGTCATTTGGGGA
AGTTTTCCACCTTCCCGTTCcgttcaccttcccgttcgggaaatatttcc
tgTTAGGGCAATAGTTGCCTTTTTCATAAAGTGTTCCCGACTGTCTGGGG
TTAgttttttcattctttcaaaatttccattttaaaGGTGAGGTCATGAC
tgtggctgttttttttttttcatattttcaaaatttccattttaaaGGCT
TGGTCATAATTTTTAGCCTCACAACTtaggggcaggctggagacttcaaa
aatggtccgatttggttgaaattggttgcaattttacaattgggcttaca
aatgatttaaaaacactgaagttgagcccagtgcggttagcacgttcgac
tgCGCTCAACagtgtttttaaagttttgctTTAAAATAAACAACATTTTG
TTATTGAACATGGTGGGCCAGCCATGGATATAATATAGGAAAGAAATTGT
GACCCATTTTCAACGTCTTTAATCAGATGTTTAGAAATGCTTGAGAGTTT
TGTATTTTGggaagtagatatcctaactaaAAATTTGGTCTATCACTTGG
TTCTGTGATACTTAGTTCTTTAATTGTAAACTTTTAAGTCGTCGACATTC
ACTTTGCgataaatttgaataaaagtaTCAAATTCATACTAACAATCCAA
AAATTGCTTCTTATTCTGTCTTATTAATCAGTTTCTTTTTTCTGTCAGGC
CATCGAAGGTACTTTCATCGATAAAAAATGTCCATTTACCGGAAACGTTA
GCATCAGAGGACGTATTTTAACTGGAATTgttcaaaacatgaaaatgaag
AGAACTATTACCCTCAGACGTGATTACCttcatttcatcaaaaaataccA
AAGATTCGAAAAACGACACAAAAATCTTGTTGCACACATGTCACCCTGCT
TCCGGTAAGTTTTATTTCTTTGGGTTGGCACCAATGAAGTctaagcccaa
agggctagaatcgaatctttaacctttctcaggtaagaaaaagtgaagcc
tggaaatatgcgccgtatttttgacgacggatgattctagcgattccttt
gttttcgagtgatatcattttcgaaattttggtgtaaattttagtttcaa
tctgttatTTGTGTAAAAAAACAGGTGGACCGTGCTAGGCCGCGTAACTT
GAGTTTAAAGCCCTAAAGCGCTATTGAGAACTTTTTATCCTTTCTCCACA
AGGAAAAGTTTGAAGCTTTAAATTTATGCCGAATTTATAATGATGGATCT
ATGATGAATCTAGCCCTTTGTTTTTAATcggcatatttttcaaaatctgg
caATAGGTTTCACTTTAAATCTGGCGCTCAATTTTAAGTGTACGATAGCA
AGATTATCTTAAAATATCAGGCTGTTTGATAAGACTGGTTCAAATGCACT
CCAATGTTTGTTCCGTTTAAACTGGTTTAAATGCACCCATGAGTGTTGGA
TGAAGTTTAATCGCAGTAAAACTATCCTTTGATCCTTCAGCATTTTTAAG
AGACTGACGTCAGTATTATTGCTTTCAATCTTGGATGCATTTGCGTGGCT
ATGTTAGTATTTGACATTGGCGCAATACAAATAGTTGGATGAATTTGTGC
TGGCCTTTAGTTTTACTTGGTGTGTAAATtgtattttgtttcttttttag
tGACGTACAACATGGAGATTTAGTGACAGTCGGTCAATGCCGTCCACTCA
GCAAAACTGTTCGATTCAACGTACTAAAGGTCGCCAAAACAAACAgtgca
aaaaaatcttttgagaaattttaaataattatCAAAGATGTTAAAAACCC
TTGAATTGCTTGTCTATTCTTTTGATTCATTGGATCCTTTaatttaacct
ttgttcgtctgttaccagcttttctcaggattggctatGGCCCATTGTTC
TTTTCTGATTCAAGTGAGggagcccaattttcaaaaaaaaatatttttgg
ggaaatttcaggggggtacagaggcagggtactaatagtagaggccacta
tgtcttcccgtgtgcagcagcttgtgcaaagggattttatgattgaatat
tgttccttgaatgtagaagatcaaaatttgagaggtggggccgggtgtga
ctactcgttgccatggaaactgacgtcattggttact Coding sequence (CDS) from alignment at scaffold_226:175730..183266+ >TCONS_00053111 ID=TCONS_00053111|Name=TCONS_00053111|organism=Clytia hemisphaerica|type=CDS|length=1884bp|location=Sequence derived from alignment at scaffold_226:175730..183266+ (Clytia hemisphaerica)
ATGTCGGAACAGACAGAAAAAGCCTACCAAAAACAACCCACTATCTTCCA
AAACAAGAAACGTGTTGCTGGTAAAGTAACAAAAGCCAAAGAACAACGTT
TTGTCAAATCTGTTGGTTTGGGATTCAAAACTCCAAGAGagGCCATCGAA
GGTACTTTCATCGATAAAAAATGTCCATTTACCGGAAACGTTAGCATCAG
AGGACGTATTTTAACTGGAATTgttcaaaacatgaaaatgaagAGAACTA
TTACCCTCAGACGTGATTACCttcatttcatcaaaaaataccAAAGATTC
GAAAAACGACACAAAAATCTTGTTGCACACATGTCACCCTGCTTCCGtGA
CGTACAACATGGAGATTTAGTGACAGTCGGTCAATGCCGTCCACTCAGCA
AAACTGTTCGATTCAACGTACTAAAGGTCGCCAAAACAAACAgtgcaaaa
aaatcttttgagaaattttaaATGTCGGAACAGACAGAAAAAGCCTACCA
AAAACAACCCACTATCTTCCAAAACAAGAAACGTGTTGCTGGTAAAGTAA
CAAAAGCCAAAGAACAACGTTTTGTCAAATCTGTTGGTTTGGGATTCAAA
ACTCCAAGAGagGCCATCGAAGGTACTTTCATCGATAAAAAATGTCCATT
TACCGGAAACGTTAGCATCAGAGGACGTATTTTAACTGGAATTgttcaaa
acatgaaaatgaagAGAACTATTACCCTCAGACGTGATTACCttcatttc
atcaaaaaataccAAAGATTCGAAAAACGACACAAAAATCTTGTTGCACA
CATGTCACCCTGCTTCCGtGACGTACAACATGGAGATTTAGTGACAGTCG
GTCAATGCCGTCCACTCAGCAAAACTGTTCGATTCAACGTACTAAAGGTC
GCCAAAACAAACAgtgcaaaaaaatcttttgagaaattttaaATGTCGGA
ACAGACAGAAAAAGCCTACCAAAAACAACCCACTATCTTCCAAAACAAGA
AACGTGTTGCTGGTAAAGTAACAAAAGCCAAAGAACAACGTTTTGTCAAA
TCTGTTGGTTTGGGATTCAAAACTCCAAGAGagGCCATCGAAGGTACTTT
CATCGATAAAAAATGTCCATTTACCGGAAACGTTAGCATCAGAGGACGTA
TTTTAACTGGAATTgttcaaaacatgaaaatgaagAGAACTATTACCCTC
AGACGTGATTACCttcatttcatcaaaaaataccAAAGATTCGAAAAACG
ACACAAAAATCTTGTTGCACACATGTCACCCTGCTTCCGtGACGTACAAC
ATGGAGATTTAGTGACAGTCGGTCAATGCCGTCCACTCAGCAAAACTGTT
CGATTCAACGTACTAAAGGTCGCCAAAACAAACAgtgcaaaaaaatcttt
tgagaaattttaaATGTCGGAACAGACAGAAAAAGCCTACCAAAAACAAC
CCACTATCTTCCAAAACAAGAAACGTGTTGCTGGTAAAGTAACAAAAGCC
AAAGAACAACGTTTTGTCAAATCTGTTGGTTTGGGATTCAAAACTCCAAG
AGagGCCATCGAAGGTACTTTCATCGATAAAAAATGTCCATTTACCGGAA
ACGTTAGCATCAGAGGACGTATTTTAACTGGAATTgttcaaaacatgaaa
atgaagAGAACTATTACCCTCAGACGTGATTACCttcatttcatcaaaaa
ataccAAAGATTCGAAAAACGACACAAAAATCTTGTTGCACACATGTCAC
CCTGCTTCCGtGACGTACAACATGGAGATTTAGTGACAGTCGGTCAATGC
CGTCCACTCAGCAAAACTGTTCGATTCAACGTACTAAAGGTCGCCAAAAC
AAACAgtgcaaaaaaatcttttgagaaattttaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00053111-exon-scaffold_226-1491911889:175730..175934 | TCONS_00053111-exon-scaffold_226-1491911889:175730..175934 | Clytia hemisphaerica | exon |
| TCONS_00053111-exon-scaffold_226-1510915933:175730..175934 | TCONS_00053111-exon-scaffold_226-1510915933:175730..175934 | Clytia hemisphaerica | exon |
| TCONS_00053111-exon-scaffold_226-1575043694:175730..175934 | TCONS_00053111-exon-scaffold_226-1575043694:175730..175934 | Clytia hemisphaerica | exon |
| TCONS_00053111-exon-scaffold_226-1491911889:180192..180320 | TCONS_00053111-exon-scaffold_226-1491911889:180192..180320 | Clytia hemisphaerica | exon |
| TCONS_00053111-exon-scaffold_226-1510915933:180192..180320 | TCONS_00053111-exon-scaffold_226-1510915933:180192..180320 | Clytia hemisphaerica | exon |
| TCONS_00053111-exon-scaffold_226-1575043694:180192..180320 | TCONS_00053111-exon-scaffold_226-1575043694:180192..180320 | Clytia hemisphaerica | exon |
| TCONS_00053111-exon-scaffold_226-1491911889:181828..182033 | TCONS_00053111-exon-scaffold_226-1491911889:181828..182033 | Clytia hemisphaerica | exon |
| TCONS_00053111-exon-scaffold_226-1510915933:181828..182033 | TCONS_00053111-exon-scaffold_226-1510915933:181828..182033 | Clytia hemisphaerica | exon |
| TCONS_00053111-exon-scaffold_226-1575043694:181828..182033 | TCONS_00053111-exon-scaffold_226-1575043694:181828..182033 | Clytia hemisphaerica | exon |
| TCONS_00053111-exon-scaffold_226-1491911889:182780..183266 | TCONS_00053111-exon-scaffold_226-1491911889:182780..183266 | Clytia hemisphaerica | exon |
| TCONS_00053111-exon-scaffold_226-1510915933:182780..183266 | TCONS_00053111-exon-scaffold_226-1510915933:182780..183266 | Clytia hemisphaerica | exon |
| TCONS_00053111-exon-scaffold_226-1575043694:182780..183266 | TCONS_00053111-exon-scaffold_226-1575043694:182780..183266 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_226 | supercontig | scaffold_226:175730..183266 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003735 | structural constituent of ribosome |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0005622 | intracellular |
| GO:0005840 | ribosome |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006412 | translation |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006412 |
translation |
| cellular_component |
GO:0005622 |
intracellular |
| cellular_component |
GO:0005840 |
ribosome |
| molecular_function |
GO:0003735 |
structural constituent of ribosome |
Blast
BLAST of TCONS_00053111 vs. Swiss-Prot (Human)
Match: RS11 (40S ribosomal protein S11 OS=Homo sapiens GN=RPS11 PE=1 SV=3) HSP 1 Score: 234.958 bits (598), Expect = 3.444e-76 Identity = 110/144 (76.39%), Postives = 127/144 (88.19%), Query Frame = 2
Query: 203 QTEKAYQKQPTIFQNKKRVA-GKVTKAKEQRFVKSVGLGFKTPREAIEGTFIDKKCPFTGNVSIRGRILTGIVQNMKMKRTITLRRDYLHFIKKYQRFEKRHKNLVAHMSPCFRDVQHGDLVTVGQCRPLSKTVRFNVLKVAKT 631
QTE+AYQKQPTIFQNKKRV G+ K K R+ K++GLGFKTP+EAIEGT+IDKKCPFTGNVSIRGRIL+G+V MKM+RTI +RRDYLH+I+KY RFEKRHKN+ H+SPCFRDVQ GD+VTVG+CRPLSKTVRFNVLKV K
Sbjct: 5 QTERAYQKQPTIFQNKKRVLLGETGKEKLPRYYKNIGLGFKTPKEAIEGTYIDKKCPFTGNVSIRGRILSGVVTKMKMQRTIVIRRDYLHYIRKYNRFEKRHKNMSVHLSPCFRDVQIGDIVTVGECRPLSKTVRFNVLKVTKA 148
The following BLAST results are available for this feature:
|
