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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00053100 ID=TCONS_00053100|Name=TCONS_00053100|organism=Clytia hemisphaerica|type=transcript|length=2585bp
TATGACTTACCGCATTTCGTTTCTCATCTAACTTTATACCCCCTGAAATA
TTTATATAGACCATACTAGGAACATTTAGCAATTTTATATACAAAATTAG
GGGGGGTTCTTCAGTCACTAATGCAGTATAAAAGAGCAAATGCCAAAAGT
AAAGCTTCATCAATCAATAAAGCAATCTATCGAAGGCTAACTGAAGATTG
AGCgaacgaaaaaataatgaaGATTACATCTAGCAACATGTAAGTCCTAT
TTTCATCTGGTTCTTTAGTTAGGCTAGAACAAAATTCTTGACTTTGACTA
GTGCACATTTTTATCTTAACAAGcaatacttttatggacctacctgttta
taaaacgaataatgaAAGTTTAATGAAGGCACATGTAGAAACAAAAactg
aataatttaaaattttgcatgTTGGtgccaaaaatcttttttcgaaaaat
tcataTCTAGCACACTGTAATTATacgtctttgtacaaaaaattaggaaa
aactaataaaaagatttttaacaaagtccaaaaaaccctatttttgggcA
TTCTTTGGGCCCAAACTggcccaaaaattattttttttttgaaaatcgaa
ctCCATCACATTTGGTAATCACTATTTTGCACCTTCGTACCAAAAATTAC
agaattcctatgattcaatcccgagaaaagttggtaacaaacgaacggac
gaacagaggttgatttataggacctccagGTTCTCAAGGGTCATCAATGT
CTCCAACAATGAAAGCACCAGAGACTCAAGAAATAAATGCTGACAATGGT
GAGATTGATGCAGAAAACGAGGAGGAGGGTGTTATGACTCAAGAACTCAA
AGATGAAATTGATCAAGGTACGACATTTTGGAAGGTGAAAACAACGGCAA
CGAAGAAAATGACGATGAGGAAGACCTTGCAAAAAGTCGTGAAAAACGTT
TTATTCGGTTCCGTAGAATTAGAGTACCACTAGCAGGCTGCTATTTTATG
GGATGCGTGCATCCTAGAGTACCACGAATTCGTATTAGCCTTCGAAGGGT
CCGGGATCAAGTCAAATGCCCCACAAGCTCCTGGTATTGCAAAATTGGCT
TGccacaaaatcaagaaaaattgtAGATGTGGATTTTTCGGATGAACTGT
TCAATTtgacttataaaattattctatcttttttaaattagatGGGTTAG
ATTTATAGAATATATAAACTTTGATAGATTTacaattaaggtcataatat
attgagaattttggttattttaacgtttttcaagatttaaagttctggcg
agaaagtcgatttttggctatctttttaattNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNcatcgaatatttcaatttgggaggggttggca
gacttccaggctatattctgagtcttattggactatttttgaacttttgg
atcctcagatcctaaggtcctaattcttaagtttcatgttaaaattcaga
gttaaaactctacccttccaacctactttagagcacttccaaatcgattg
tggttcaaaaacttcccggtggatttctcttttttctcaaatattatgac
cttgattgtagctgatgattgtcgtccatacgggcggcatgaaacttaaa
gctctgaaacaataaatcaaagcctctttcttttaatttgaacaaGTTCT
GATATCATCGAGCACTCTCGGCAGATAGAAGAAAATAGACTTGTAAACTT
TGATAGATAAATTTCAATACTTTGAAAGGCATAAGCCTTGTCCCCTTTCG
CCATTTTAACCTTAATGTTTTGTAGAGTAAGGTAGAGTAAATAAAGGGAT
TATGAAACAATTTCATCCTTGTGTGCAAAActaaattcgaaaagttttaa
atttctcGTTTAAAAGCTCTTGTGCTCATTCTTGAGTATTTACATAGAAG
ATTTTTGAAAGGTAATCGGGCCCCCTCTCAAGTCTAAAAATCATATCTAT
TTACGAACAAATCACATGTGCCACCCCCTTCTCAtggacccactgggacc
ccttcccactggaaaattggccaaaatatcgcccccagtggaaaattata
ctccaatttatGTCCACgtcgaaaataatcaaataagcaaatcctcactg
taaaatatCGTGCtagtttttccatccccactgaattttatgggttgaaa
acaatggaatttaaatccccagccataaaaaacaatATCAATCCCCGTCG
ATTGTTTGCCTGTTATTTCCTGTTATTTCTACCCCCACCCTTGGCAGAAA
CAATCCtaccggatctgtgagaagggtctgtgagaagggggtatcaTATG
GTTAGCCCCCACCTATACAGGTAGTGAAAATCAATCGATAATACTCTCCA
CTTACTTTCATAGAGCCATTGCATTGACATCCAATCGATCAACGATCACT
TCAAATACAAAATCAACATCAATTAATGCTTCCTGAAGTGTTTTAGATGT
CTCTACGTCACCCTACGAAAATAATGGCACATTAGTCCAGTTAATTAAAG
AACCTTCTATCTCTTAGGGTTCGGTTACAAAAGAT Run BLAST on NCBI transcript from alignment at scaffold_226:117737..121296+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00053100 ID=TCONS_00053100|Name=TCONS_00053100|organism=Clytia hemisphaerica|type=transcript|length=3560bp|location=Sequence derived from alignment at scaffold_226:117737..121296+ (Clytia hemisphaerica)
TATGACTTACCGCATTTCGTTTCTCATCTAACTTTATACCCCCTGAAATA
TTTATATAGACCATACTAGGAACATTTAGCAATTTTATATACAAAATTAG
GGGGGGTTCTTCAGTCACTAATGCAGTATAAAAGAGCAAATGCCAAAAGT
AAAGCTTCATCAATCAATAAAGCAATCTATCGAAGGCTAACTGAAGATTG
AGCgaacgaaaaaataatgaaGATTACATCTAGCAACATGTAAGTCCTAT
TTTCATCTGGTTCTTTAGTTAGGCTAGAACAAAATTCTTGACTTTGACTA
GTGCACATTTTTATCTTAACAAGcaatacttttatggacctacctgttta
taaaacgaataatgaAAGTTTAATGAAGGCACATGTAGAAACAAAAactg
aataatttaaaattttgcatgTTGGtgccaaaaatcttttttcgaaaaat
tcataTCTAGCACACTGTAATTATacgtctttgtacaaaaaattaggaaa
aactaataaaaagatttttaacaaagtccaaaaaaccctatttttgggcA
TTCTTTGGGCCCAAACTggcccaaaaattattttttttttgaaaatcgaa
ctCCATCACATTTGGTAATCACTATTTTGCACCTTCGTACCAAAAATTAC
agaattcctatgattcaatcccgagaaaagttggtaacaaacgaacggac
gaacagaggttgatttataggacctccaggtaggttcAATAATAAAGAAT
ATGGAAACCTGcccaaaattttcaagaataaCTTTAGAACAATCCGAGCT
TCGGATGcagtagactatgctatagtcaaAGACGAACCACTatttaagaa
aaaagcccaaagctgaagaaaattcGCGAAcagttttttttgccgaaaag
agtttacagtcggtagagttgccagtcgccatttttttccgtataccgcc
ataacgccataccaccatattttcccgcctttactattaCTGTAatggac
gataacatcgtctatttTAGAGGCTGATTTTGAATGTTCGGCAAGTTGAA
AACGATTCGATTTAAAGACCTCAAAATCTTTCCATACTCTAAATCTCCTA
TTCATTCCAGGTTCTCAAGGGTCATCAATGTCTCCAACAATGAAAGCACC
AGAGACTCAAGAAATAAATGCTGACAATGGTGAGATTGATGCAGAAAACG
AGGAGGAGGGTGTTATGACTCAAGAACTCAAAGATGAAATTGATCAAGGT
ACGGTTAGAATGATCTCTTTATCAAAAATCCTTTCGAGAATCGGCCCTTA
AAgtgaaaacaatttgaaatttttggattcCTTACAGACATTTTTCCAAG
ATTCGATCGATTTTTGCAAACATTTAAGCCACAACTATCCCCCTTGGTCC
GACCATCAATATGGCTACACTAAAATAAGGAGGGACTAAGGGTTTTTTGG
GGTTTGTGGTGTTCTGATATTCTTTAATATAtacttatttcaattttttg
cttggaaaaaaatctgaaacgttcagtaaaatttttttctcatttcgaAG
AACTCGAGTGATTGGTTACAGCCAAATTCGAAACTCTCTTATTCTTTCTA
TGACTCGAAGAATACTtttgtcccttgaagatcgaattagagagtgtcga
ctattcatgatatgcaccattgcaatgtcttccacggagccaacagttga
ttggttgaaagtgacgtattgactgattttacgtcacttacaaccaatca
gctattgggtccgtgatgtaatctcagaagacattgcaattttccatatc
atgaatataacattattacaatcgcaaattttcTCACACTTCAACAGACA
TTTTGGAAGGTGAAAACAACGGCAACGAAGAAAATGACGATGAGGAAGAC
CTTGCAAAAAGTCGTGAAAAACGTTTTATTCGGTTCCGTAGAATTAGAGT
ACCACTAGCAGGCTGCTATTTTATGGGATGCGTGCATCCTAGAGTACCAC
GAATTCGTATTAGCCTTCGAAGGGTCCGGGATCAAGTCAAATGCCCCACA
AGCTCCTGGTATTGCAAAATTGGCTTGccacaaaatcaagaaaaattgtA
GATGTGGATTTTTCGGATGAACTGTTCAATTtgacttataaaattattct
atcttttttaaattagatGGGTTAGATTTATAGAATATATAAACTTTGAT
AGATTTacaattaaggtcataatatattgagaattttggttattttaacg
tttttcaagatttaaagttctggcgagaaagtcgatttttggctatcttt
ttaattNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNcatcgaa
tatttcaatttgggaggggttggcagacttccaggctatattctgagtct
tattggactatttttgaacttttggatcctcagatcctaaggtcctaatt
cttaagtttcatgttaaaattcagagttaaaactctacccttccaaccta
ctttagagcacttccaaatcgattgtggttcaaaaacttcccggtggatt
tctcttttttctcaaatattatgaccttgattgtagctgatgattgtcgt
ccatacgggcggcatgaaacttaaagctctgaaacaataaatcaaagcct
ctttcttttaatttgaacaaGTTCTGATATCATCGAGCACTCTCGGCAGA
TAGAAGAAAATAGACTTGTAAACTTTGATAGATAAATTTCAATACTTTGA
AAGGCATAAGCCTTGTCCCCTTTCGCCATTTTAACCTTAATGTTTTGTAG
AGTAAGGTAGAGTAAATAAAGGGATTATGAAACAATTTCATCCTTGTGTG
CAAAActaaattcgaaaagttttaaatttctcGTTTAAAAGCTCTTGTGC
TCATTCTTGAGTATTTACATAGAAGATTTTTGAAAGGTAATCGGGCCCCC
TCTCAAGTCTAAAAATCATATCTATTTACGAACAAATCACATGTGCCACC
CCCTTCTCAtggacccactgggaccccttcccactggaaaattggccaaa
atatcgcccccagtggaaaattatactccaatttatGTCCACgtcgaaaa
taatcaaataagcaaatcctcactgtaaaatatCGTGCtagtttttccat
ccccactgaattttatgggttgaaaacaatggaatttaaatccccagcca
taaaaaacaatATCAATCCCCGTCGATTGTTTGCCTGTTATTTCCTGTTA
TTTCTACCCCCACCCTTGGCAGAAACAATCCtaccggatctgtgagaagg
gtctgtgagaagggggtatcaTATGGTTAGCCCCCACCTATACAGGTAGT
GAAAATCAATCGATAATACTCTCCACTTACTTTCATAGAGCCATTGCATT
GACATCCAATCGATCAACGATCACTTCAAATACAAAATCAACATCAATTA
ATGCTTCCTGAAGTGTTTTAGATGTCTCTACGTCACCCTACGAAAATAAT
GGCACATTAGTCCAGTTAATTAAAGAACCTTCTATCTCTTAGGGTTCGGT
TACAAAAGAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00053100-exon-scaffold_226-1491911889:117737..118465 | TCONS_00053100-exon-scaffold_226-1491911889:117737..118465 | Clytia hemisphaerica | exon |
| TCONS_00053100-exon-scaffold_226-1510915933:117737..118465 | TCONS_00053100-exon-scaffold_226-1510915933:117737..118465 | Clytia hemisphaerica | exon |
| TCONS_00053100-exon-scaffold_226-1575043694:117737..118465 | TCONS_00053100-exon-scaffold_226-1575043694:117737..118465 | Clytia hemisphaerica | exon |
| TCONS_00053100-exon-scaffold_226-1491911889:118847..118989 | TCONS_00053100-exon-scaffold_226-1491911889:118847..118989 | Clytia hemisphaerica | exon |
| TCONS_00053100-exon-scaffold_226-1510915933:118847..118989 | TCONS_00053100-exon-scaffold_226-1510915933:118847..118989 | Clytia hemisphaerica | exon |
| TCONS_00053100-exon-scaffold_226-1575043694:118847..118989 | TCONS_00053100-exon-scaffold_226-1575043694:118847..118989 | Clytia hemisphaerica | exon |
| TCONS_00053100-exon-scaffold_226-1491911889:119584..121296 | TCONS_00053100-exon-scaffold_226-1491911889:119584..121296 | Clytia hemisphaerica | exon |
| TCONS_00053100-exon-scaffold_226-1510915933:119584..121296 | TCONS_00053100-exon-scaffold_226-1510915933:119584..121296 | Clytia hemisphaerica | exon |
| TCONS_00053100-exon-scaffold_226-1575043694:119584..121296 | TCONS_00053100-exon-scaffold_226-1575043694:119584..121296 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_226 | supercontig | scaffold_226:117737..121296 + |
Blast
The following BLAST results are available for this feature:
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