TCONS_00053083 (transcript) - C. hemisphaerica

Overview
NameTCONS_00053083
Unique NameTCONS_00053083
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length680

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00053083 ID=TCONS_00053083|Name=TCONS_00053083|organism=Clytia hemisphaerica|type=transcript|length=680bp
ATTTAAATTTGAAATGGAGAGAGATTATAAGACTGTTGTTTTTGGTGGAG
AATGGAATATTGGGAAATCTTCAATGTTTATATATCATTGGTATGGTGAA
CAAAACCCACAATATATTCCAACCAAAGTTGATCCTTACAATGTTGACGA
GTACCCCGTTGGTGAAAATGGAGAGATATTGAAAGTTTCATTTATAGACA
ATGAAGGTGGAGGTGAAGATTGGCCTCGATTTCGACATTTTGGATATTTG
ATGGCGAATGTTGTTgtgctttgtttttcaatcgCTGCACCAGAGACTTT
TGAGTTGATTGAAGAATATTGGTATCCATTTACTCAAAAACACTGTCCAA
CAGCTAAACTATTTTTGCTTAGTACAAAAAAGGATTTAAGAAACGATGAG
AAAGTTATACGAGAACTTTCAAAAGCTGATGAAAGGCCTGTTACTTATAA
CCAGGGTAAAAATATGGCTAACAAAATTGGAGCTATTGGGTATTATGAGT
GTTCTACAAGACTAGGGGAAGGGGTTGAAGAAATCTTTAAGGCTAGTGCG
AAAGCTGCATATGGAACAATTGATCCAAAACCTAAACtgtatagaaaaag
aaaatgcttGATTATGTAATTATatgtatttcatttttcttgcattcttg
taattttttgatTCATCCATCCAACCATCC
Run BLAST on NCBI

protein sequence of TCONS_00053083-protein

>TCONS_00053083-protein ID=TCONS_00053083-protein|Name=TCONS_00053083-protein|organism=Clytia hemisphaerica|type=polypeptide|length=205bp
FKFEMERDYKTVVFGGEWNIGKSSMFIYHWYGEQNPQYIPTKVDPYNVDE
YPVGENGEILKVSFIDNEGGGEDWPRFRHFGYLMANVVVLCFSIAAPETF
ELIEEYWYPFTQKHCPTAKLFLLSTKKDLRNDEKVIRELSKADERPVTYN
QGKNMANKIGAIGYYECSTRLGEGVEEIFKASAKAAYGTIDPKPKLYRKR
KCLIM
Run BLAST on NCBI

transcript from alignment at scaffold_225:108942..109621

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00053083 ID=TCONS_00053083|Name=TCONS_00053083|organism=Clytia hemisphaerica|type=transcript|length=680bp|location=Sequence derived from alignment at scaffold_225:108942..109621 (Clytia hemisphaerica)
GGATGGTTGGATGGATGAatcaaaaaattacaagaatgcaagaaaaatga
aatacatATAATTACATAATCaagcattttctttttctatacaGTTTAGG
TTTTGGATCAATTGTTCCATATGCAGCTTTCGCACTAGCCTTAAAGATTT
CTTCAACCCCTTCCCCTAGTCTTGTAGAACACTCATAATACCCAATAGCT
CCAATTTTGTTAGCCATATTTTTACCCTGGTTATAAGTAACAGGCCTTTC
ATCAGCTTTTGAAAGTTCTCGTATAACTTTCTCATCGTTTCTTAAATCCT
TTTTTGTACTAAGCAAAAATAGTTTAGCTGTTGGACAGTGTTTTTGAGTA
AATGGATACCAATATTCTTCAATCAACTCAAAAGTCTCTGGTGCAGcgat
tgaaaaacaaagcacAACAACATTCGCCATCAAATATCCAAAATGTCGAA
ATCGAGGCCAATCTTCACCTCCACCTTCATTGTCTATAAATGAAACTTTC
AATATCTCTCCATTTTCACCAACGGGGTACTCGTCAACATTGTAAGGATC
AACTTTGGTTGGAATATATTGTGGGTTTTGTTCACCATACCAATGATATA
TAAACATTGAAGATTTCCCAATATTCCATTCTCCACCAAAAACAACAGTC
TTATAATCTCTCTCCATTTCAAATTTAAAT

Coding sequence (CDS) from alignment at scaffold_225:108942..109621

>TCONS_00053083 ID=TCONS_00053083|Name=TCONS_00053083|organism=Clytia hemisphaerica|type=CDS|length=618bp|location=Sequence derived from alignment at scaffold_225:108942..109621 (Clytia hemisphaerica)
TTACATAATCaagcattttctttttctatacaGTTTAGGTTTTGGATCAA
TTGTTCCATATGCAGCTTTCGCACTAGCCTTAAAGATTTCTTCAACCCCT
TCCCCTAGTCTTGTAGAACACTCATAATACCCAATAGCTCCAATTTTGTT
AGCCATATTTTTACCCTGGTTATAAGTAACAGGCCTTTCATCAGCTTTTG
AAAGTTCTCGTATAACTTTCTCATCGTTTCTTAAATCCTTTTTTGTACTA
AGCAAAAATAGTTTAGCTGTTGGACAGTGTTTTTGAGTAAATGGATACCA
ATATTCTTCAATCAACTCAAAAGTCTCTGGTGCAGcgattgaaaaacaaa
gcacAACAACATTCGCCATCAAATATCCAAAATGTCGAAATCGAGGCCAA
TCTTCACCTCCACCTTCATTGTCTATAAATGAAACTTTCAATATCTCTCC
ATTTTCACCAACGGGGTACTCGTCAACATTGTAAGGATCAACTTTGGTTG
GAATATATTGTGGGTTTTGTTCACCATACCAATGATATATAAACATTGAA
GATTTCCCAATATTCCATTCTCCACCAAAAACAACAGTCTTATAATCTCT
CTCCATTTCAAATTTAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033525XLOC_033525Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053083-proteinTCONS_00053083-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053083-exon-scaffold_225-1491911889:108942..109621TCONS_00053083-exon-scaffold_225-1491911889:108942..109621Clytia hemisphaericaexon
TCONS_00053083-exon-scaffold_225-1510915933:108942..109621TCONS_00053083-exon-scaffold_225-1510915933:108942..109621Clytia hemisphaericaexon
TCONS_00053083-exon-scaffold_225-1575043694:108942..109621TCONS_00053083-exon-scaffold_225-1575043694:108942..109621Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_225supercontigscaffold_225:108942..109621 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.31427	3.45229	2.04686	2.16942	0.812632	0.802691	2.51787	4.07977	3.04677	3.93116	12.4391	2.10695	5.46044	3.58973	2.65184	3.48844	3.50583	1.97055	1.121	4.44081	2.40332	3.62333	2.5046	3.06223	6.55066	6.56808	1.03285	1.54319	3.00975	3.83307
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001806Small_GTPase
IPR003578Small_GTPase_Rho
IPR027417P-loop_NTPase
Vocabulary: Molecular Function
TermDefinition
GO:0005525GTP binding
GO:0003924GTPase activity
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
Vocabulary: Biological Process
TermDefinition
GO:0007264small GTPase mediated signal transduction
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007264 small GTPase mediated signal transduction
cellular_component GO:0005622 intracellular
molecular_function GO:0003924 GTPase activity
molecular_function GO:0005525 GTP binding
Blast
[Close]
BLAST of TCONS_00053083 vs. Swiss-Prot (Human)
Match: RHOA (Transforming protein RhoA OS=Homo sapiens GN=RHOA PE=1 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.202e-36
Identity = 71/197 (36.04%), Postives = 113/197 (57.36%), Query Frame = 2 
Query:   29 KTVVFGGEWNIGKSSMFIYHWYGEQNPQ-YIPTKVDPYNVDEYPVGENGEILKVSFIDNEGGGEDWPRFRHFGYLMANVVVLCFSIAAPETFELIEEYWYPFTQKHCPTAKLFLLSTKKDLRNDEKVIRELSKADERPVTYNQGKNMANKIGAIGYYECSTRLGEGVEEIFKASAKAAYGTIDPKPKLYRKRKCLIM 616
            K +V  G+   GK+ + I  +  +Q P+ Y+PT  + Y  D   +  +G+ ++++  D   G ED+ R R   Y   +V+++CFSI +P++ E I E W P  +  CP   + L+  KKDLRNDE   REL+K  + PV   +G++MAN+IGA GY ECS +  +GV E+F+ + +AA      K    +K  CL++
Sbjct:    6 KKLVIVGDGACGKTCLLIV-FSKDQFPEVYVPTVFENYVAD---IEVDGKQVELALWDT-AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQARRGK----KKSGCLVL 193
The following BLAST results are available for this feature:
BLAST of TCONS_00053083 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RHOA1.202e-3636.04Transforming protein RhoA OS=Homo sapiens GN=RHOA ... [more]
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