TCONS_00052917 (transcript) - C. hemisphaerica

Overview
NameTCONS_00052917
Unique NameTCONS_00052917
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length254

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00052917 ID=TCONS_00052917|Name=TCONS_00052917|organism=Clytia hemisphaerica|type=transcript|length=254bp
GCAGCTCCTTGTATGAACTTCGTGGAATATGGATATCGAGCATCAAATGT
ACCAAAGAATCACGTTGAAGTCATCAGAAGTGGAGGTTGTTGGTCAATGG
TTGGTATGACAGGAGGTAGACAAAGTCTTTCCATCGGCAATGGGTGTTTA
TGGGAAGGAACGATCATTCATGAGTTTCTTCATGCTATTGGATTTTATCA
TGAACAAAGTCGACCTGATCGTGACGAATACGTTAATATCATCTTCAGAA
ATAT
Run BLAST on NCBI

transcript from alignment at scaffold_222:353671..370270+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00052917 ID=TCONS_00052917|Name=TCONS_00052917|organism=Clytia hemisphaerica|type=transcript|length=16600bp|location=Sequence derived from alignment at scaffold_222:353671..370270+ (Clytia hemisphaerica)
GCAGCTCCTTGTATGAACTTCGTGGAATATGGATATCGAGCATCAAATGT
ACCAAAGAATCACGTTGAAGTCATCAGAAGTGGAGGGTAGGgtggaaatt
ttattgaataaaattgttttatattataattgaaaattccaAGTCTCCCC
TTCCGATAAAATATGAACTCATTTTAAGGACGTGACCACAATATCTTTAT
ATTGCCTGAAAACACCATACCAGATTTGATTTAGTGTTCTAAGATGTTCT
TGCAATACAATATTGAAACCTATTATCACTTTTTTAAGTGGAGGGTAGGT
AAATTTTATCGAAAGAAATTGTttgattcaaaacaaaattcaactCGATA
CAAAAAATGGAGTAATTTCCAGAACGCGCCCTCCCACAATAAGAAATTTC
TATGGAAAAAAAGTCTCGAAATATCGCACATATTTTGACTTAGTATTTCA
GTATTCCTGAAATTCTCTGTTCAAAGATGTTCTATAAATATACTATTGAG
CATACTTTTACTACTTTATCTCCTAGTTCTTTGTTTATGGTTGGCATTTC
TTTTAAAgtggatttgattaaaaagattCTCCCTTGCATATTTTAAGTCC
AGTATCGCATTACATACACTAATCCCTTAAACTGTACCGTTTCTTTAGTT
GTTGGTCAATGGTTGGTATGACAGGTGGTAGACAAAGTCTTTCCATCGGC
AATGGATGTATGTGGGAAGGAACGATCATTCATGAGTTTCTTCATGCTAT
TGGATTTTATCATGAACAAAGTCGGCCTGATCGTGACCAATACGTTAATA
TCATCACCAGAAATATCGTTGGAGGTAAAGATTTGATTTCCGCAATACTG
GTGTTATTATCCTAATATAACCTCTCTGATTtccgggacaagctggagtt
tttacaagctctcgtttgatttggttggtcgttaacctgtaataaaacaa
ttttgttactttttctaaagaacgcatcatttctattacttcaaataacc
aattagtgaagtctcttgtaaaaactccagcccatCCCTGATTTCCATCA
CACCCTAATATAAATTGTATCTGAAAATAATGTGGCCAGTCGATataatt
ttgcgcccctcttatCTACGCTACTGATAATTCTCAAATTATATAAACGT
CgcgttgaaaaataaaaatcctgTAATCCAAATTATTAAATTTAACACCT
CGCTATGAACTTCTACTTCATTCATTTGctatatttttatcttttaggTC
GTGAGCACAATTTCAAGATTGCATCGAGGATCAACAGTCTTGGTGTTGAA
TACGATCGAGTTTCTGTTATGCATTACTCAAAGTAAGATATTGCCAACAT
TGGTTCTTACGTAACCTTGAAAAGGtctgtttccaaaaaaaaatggCAGT
CCGCTAATTCTGAAACATtatcgagtttatgtattcgagaacAACCGGAG
GCAACAtcgagccgtacatcaactattgACTTTGTTTTGTGTCGATTTCA
CTTACCTTCGCCCTCGATAACATAAACTCCCCTtgtaaaaattcttgata
agatctgaaaagatcgttgaagatctttcaagatctttaacaagtaagaa
tctttaaaaaatctttgtaagatcttacaacgATTCTTAggcaatcttga
aaatttcttccaacaaaaagatctttaaagatcttgtaAAGAAATCGTTA
AGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNGTTAAGAATCTTAAAAGCACGTAAATTTCTGGTTatgattgtttttca
taagaaggaGTCTTTAGACTCAAGGAGAGCAATCTCTTAGGATAGTATTT
ACGAAACAGTTTTTGGTCAGCTTCGAAATACGGTAAgtggtttttttctt
ttgtgtgtGTGTTATCATTGACTGTACTAATGAAATAGTTAATTAATGAC
GAGATCATCAGTTGAATGCTGTCACTCGAGCGAAGCTTTCGGCCCTTATT
CAATAACTGAACGGGGATAGTAGTAAAATTCCgtcagcgaccgtagtgca
gtggtagagcatccgtctACAgtgtgcaaggttgtgggttcaacccccgg
CCGGGTCACACCAAAGATTcctaaaatggtacttgatgcctctctgcttg
atgctcagcaagtAGGTGGAGCAatccctcccctaccttcaggtagatag
ctatcgaaagtgGAGCCTGCAGGTCATCTccgacttacttttacttaaAA
TTCCGTCAAGATCTTGAATCACTGTAAGGGACAAGAATCTTATTCAAAAC
TTATAAAAGAGTCTTATCAGATCgttaaagatcttgaaagatcttgGCAC
GTTCgtagtaagaaactgaaaaagaagaagcaaagtttcttgataagatc
ttttcaagaacttttcaagaatttttaccagggtCGCCATTGCTTTAAAA
GAGAAGACAGATTTTCTTAAGTGATTCCTGGATGGTCAGATTAACTAAGG
TTGATTAAAGTCTTTTANAAGAGAAGACAGATTTTCTTAAGTGATTCCTG
GATGGTCAGATTAACTAAGGTTGATCAGAGTCTTTTGGAACATCTTTTTT
CTACGAACTTTCGATGGACTCACAAATCATTAATCAAACAAAACTTTTTC
TTCTTCCAGACGAGCTTTTAGCAATGGTAATGGAAACACAATCGAATGGA
AAGCTAACCCTAAGTTATCACTTGGTGGAAATAAATTGTCTGAGAAAGAT
ATAATgcaaatcaatttgaaatactGTAGTGACGTCAAACCTACCACTAC
AACTACAACAGCCACTACTAAAAAACCAACGACTACGAAAAAACCAACGA
CTACCACAAAAACTACAAAAACCACAAGAACTAAAAAAACAACGAAGCGC
CCGAAAACTACAAAGTCCACCAAAATGACGACAACGACACAACGGCCTGG
AAAAGGttggaaaatcaaatatctttcCTAATTTTCATACAAAGATAGTA
CAAATTTTAAGAATAGTTTATAGAATAGACGCTAAAAAAGGTAGATTTTT
TCGCCTCTAGTGTCAGACCTGGTGTAGAGTAAAAAACCGCTAAAATGGAA
AAAAGCAATTACTCTCgtgtacctaatagccgggggatttgaataagcag
ggggttggaaaaatggTGGGTTGGAATTagaaatgtcctgggtggaaaac
ttttttaaaggaGGCTAATACTGCNtctgtaaacatctccgccactgctt
actccacccgaatttatcacgcctctcctaaactattcccttttttagtg
atcttgtgtagacgataggatcgtctacagGGTTACCAAATTAATCCTGC
CTCCGAAACTATTCCCTATTTTAGTGATAGTCTACCTCGGGAGTTACTTT
GGTATAAAATGGGTTTTGACAAGTATATGCGAGCTTTAAGGACAGTAAGG
ATCCCTTTTTAAACCCTCAAAAGTCTATTAAAGGGGTGCAAGAACCATCA
CGAATAAGCAATTGAAAGGGAACGGAAATATCAAGATCAACTCCCTCAAA
GGATAATANGAGAGTATCCTGTAGGATATCTTTCTTGGAAAACTTTggca
attttgaaataagattTTGTAATGCAATCCAATCTAAGGTCACTTTTTCC
ATAAATCATGATacaaatctcataaaaaagtctCACGTAGATCAAATCAT
GACATTGCAATAAACTTGTCTTTGATACTTTTCAGCATGTGGTGACCGAT
TGGGAGCTTGCATTGCCGTTCAGTTCAACAAAGGCTTATGCCGTTCGTAT
AACTATAAATACTACTGCCCCCGATCGTGTGGGTCCTGCAAAGGTCCTAA
ATCTGAAAAATGTATGAATTTGAAAGATACAAAATATGATTGTCAATCAA
GAGCTAAACGCGGAGAATGTCAATCTCAACGCAGGAGATATGGATCTGTT
CGCTGGAGAATGAAGACTCAATGTCCACGTGTCTGCTGCGATCGTGGAGA
ACTCTACAAACGTCCTCGATAAAAAAAAGAGACAGTAAAATTAATAATCT
AAATTTTGATATACACAAAGACAAGGTCTCAATTTTATGCATAATAAAAA
ACGTGGGTTATCAGATGATTAAAGTCCAAACAATTTCATCCTTTATTTTT
AGGCCTACGTTCTCTGCTCTAGAAGAAATAGAGGAAAGAGTTTTTCACTT
CCACATCTTTTATACCACTTATGGTAATTTTTACAGGAATTTTCACTACC
TTTTCCAATTTCTTCCTGCATTTTCAATTAATGAAACAATATCGCAATAT
ATCATTTATAACAAATTAATCGAAAGCAATGATTGCTTATTGCTTCatta
aattatttatttatttatttatttacttgatttatCTATTTGCCATTTAA
AGTAAACAAACTTACAAATGATTAATCTTGGAATTGTCTTGTCTTTCAAA
CCACCTTCTACCTCCTTCTTTCAGCAGGGTtactagacgatgttatcgtc
cgttacagtgataataaaggcgggaaaaatggctgtatggcgttatggcg
gtatacgaaAAAAAACGGCGGGAGAGTTTCNgttaaaactcagagttaaa
actctacccttcgaacctactttagagcacatacaaatcgattgtggttt
caaaacaccccggtgaatttcccttttgtgccaagtattttgtcactgat
tgtagattcCCTCTTGTTGATTGACGTCACAGAATCGCTCACTTATGATT
AAATACGTGATAAACGATCACGGTTGCAATAACATTCGAGTTGTTGACAA
ACGCCATAATTGGTCTGTTCTTTTGTTTAAAGGGGCATTGGCAATCAAAG
ATTTAAATAGCAAATCGCAAATAGCATTAACTATCTAGATTCCCTCTTGT
TGATGATTGACGTCACAGAATCGCTCACTGAAGATGAAATACTTGATAAA
CGATCACGTTTGCAATAACATTCGAGTTGTTGACAAACGCcataatacac
ctttcctgagtttttttcgactttttgaaaaacactgttCCAAAACCCTG
CTCTACtttttatcgaccgccggaggcggtttctttcatagtggtacgct
aatctcgttttgccttggctcattactttgtctaccatttactttcgggt
TTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNtcgagacatgaaaaatgactatattgtaatctgttttcaatgaat
aatctaaaatgtactggagatgacatgtaggcgttaataatgtgcgcgca
ctctctcgcgagcgtgatgcgtgatggaaggcggtcgtttcagtgtggtt
tagatccacactgtgacctagttaatttcgcctagcgaaagtattacgat
agcctttcgcggcggcggtgtaataaaaaatttacaaaacgaaagtactc
gatacggtggacaaactcactaaattcaatttacaaattacacgctcgta
taaccacggacgattttcgggcgttttctttggattacgtcatatagcTT
TGtttctttagcttcacagtttggattttttctttattttcttataagca
tatactttataagaatcaaatcaataactcttgataaacggtgatatacc
cttcgataattagttcttacaaagtaaataaggaatggtgcacaatatga
gaatatctatttttcttataagcatatactttataagaatcaaatcaata
actctcgatagaaggtgatatagccttcggtaattagttcttacaaagta
aagtaaacaagggatggcgcacaatatgagcatatttatttttcttataa
gcatatactttataagaatcaaatcgataactcttgataaacgatgatat
agccttcggtaattagttcttacaaagtaaacaagagatggcaggcaata
tgagcatattcatttttttataagcatatactttataagaatcaaatcga
taactcttgatagacagtgatataccgttcagtaattagttcttgcaaag
taaacaagggatggNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNtaaacaagagatggcgggcaa
tatgagcatatttatttttcttataagcatatattttataagaatcaaat
caataactcttgatagacggtgataaaCCCTTcgataattagttcttaca
aagtaaacatgggatggcgcgcaatataaacatatttatttttcttataa
gcatacactttataagaatcaactcaataactcttgatagacggtgatat
acccttcggtaattagttcttacaaagtaaacaagagatggcgggcaata
tgagcatatttatttttcttataagcatatattttataagaatcaactca
ataactcttgatagacggtgatatacccttcggtaattagttcttacaaa
gtaatcaagggatggcgcgcaatatgaacatttttaccttatcggggaaa
acttcgtcggggaaaaatgtTCGTAACTTGCTGTTCTTAAGAATTAAGCA
ACCATTGTTCGTAAATTGATCTTATCTTTTTAGCGactttgagcctcgtt
gttcatataaaattgtttcatcaaggctcgatgtaaagtagacttcagat
tagcttccatctctacttcttgttttttcccatgcagtttgaactttagg
cgaaattttcgacttcaagtcgtcttgtttaatTTAGAAAGATTCTACTA
CGaaatacaaaatcaacaaaaaaagaattatgttAAAAGCTCTTCCggtt
cttgagatatttcaattttaaagtttttccttAAACAAAAGTATCCCATG
GAAACGGCATAGAAACGAGGCCCGGTAggataaaatatcttttaagaGAG
GTTTGactgtaaaaaaaaaaggaattaaaacagccataaaaaaggaacgg
aaaaagcttttgatctcaaattttcagaatgaCTTTGTATcaccaaaagt
ttcaaaagtaTCAAGTTCTCGTTTCAAACTAGAGAGGTCGgaaaaaaatc
gataaacttgggaaaggtgtattggtcTGTTCTTTTGTTTAAAGAGGCAT
TGGCAATTAAAGATAAAAAACCAGAAATGAACAGGGAAATGGACTCGGGT
TTGAAAGCCTCTAGAGACTTGAATTTGTTCCGCTAAaaaaagtctgtctc
gaaataatttgcagctggagaaataaatagctgtaacttttgatagaatt
cgaatcaagttacggttttgtgctcgttaaaaagatattNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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taacgagcacaaaaccgcaacttgattcgaattctatcaaaagttacagc
catttttttctccagctgcaaattatttcgagacagactttagttaattt
ttgatttttttaaaaaatttgttcaacaTTTTCAGTATTACTATCACTCT
GACGATGCTTTTGTTGTGAAGCAAAATattagcttttcaaaaaatgaaaa
ttttgttgtttgtgatctGACTCCACATTGATTCatggcaaaatcaattt
tcgtattaagttttatcttgtttttactgaagctgtcatatggtcaaaat
ttttggataaataaagtttaaaaacttTGGCTGGACATCGGGAAAAATGT
TATCTCGAAGGGTATCGATTTTCGCACTTTGATTTGGTTACCACCTAATC
AcatcgcaaacctagtaccagCCTCCTCCGAGGCTGATGACTGAGCATTA
TTTGAACAGTAAATTCAATGAACCTAAAATCTGCCAAAAAGTATCAAATT
TAAGACTCACCCTGTAGTAAGGAAGACGGCGAATTAAGTGTGTCTTTTTT
CCAAATAcatacatccccttctcacagacccggtaggattttctCATCCA
GTAGGGATGAAAATAGTGGACTGAAACTCgacggggattgatattcccat
attttttatggctggggatttcataatattcaatatcataatattttgca
gtgaggattggtttatttgattattttcagtggggacaaaaactgGAGGA
TAATCTCTAaccggggacaatattttggacaattttactAGTGGGAAGGG
TTCTCTCTCAGTGGGTATGAGGGGGTGTATAAATGTTTGTGAACATTAGA
TTGGTGgtgaaagaacgttgtgtgctagctgggtgACTAACGGATTAACc
aattaaagattttgtttgatttttggtGAAGGTCAGCTATATCACAACCT
TTTATCAAAGGCCTTGTTTGACCCATAGATctataaagcccaaagggctt
gATGGCGTACTTTTTGCTGAGAAGTGTgtcgtggttaggtaggaaaccCT
ACTAAAGTCACCATAATAAATAGCAATAAATTGCataaaacaatagcaac
aatattttttccgatattcacttttttttgcctgcgatggcttaaagcac
gacatctagcccttcgagctttatagagaagaattttgaatttctcaTTC
ATTAAAATGGGTCGGCGGGAATGTTCTGTAGCCAATGGAACAGAATCATA
AAGGTCACAAAGGTATTGTTATTACCTGGAGCTTTCATTAGAGTATTCTC
CCCTTGTTAAAGTATCTAATATGTCACATACCCATTAAAACCTCAGTCCC
ACtgttggaaaatttggcaaaaaatctCGTCCCCGTTGGGAAAAATacct
tagaatttcagccccactggtaaatttactttgatttcatcccccattcg
aaatgtttaaaaattgcacttcaaagcCTTCCCCACTGGATCTTTTTATC
TTGGAACAATTTACCCCCATTGTAGGAAAAATTTTAACGgaactgtgaga
cagggatgtcttCGTTGGGTAATCATACTGGTATTCTTAGCGAGGCTACT
CTTATAATAAGGTCGCAAATAAGATTAAGTGGAATGATATCAACTTCATC
CTGCCAAAGTCtactaaaatttggaaaaatgacAAACTATCGTACTTTGT
ATTACATCTGACCGACGGTAAAATATAACGTCATTATTACGACAATAAGA
CGCACTGACTTTCCAAAATCACGGCACGTATCTCCGCCTTTGAAGATTCT
CCAATACgcaaaatattgtttcaatttttctggTTATTAGATGTCAAGTT
TGGTATATAAAGTGTAATGGATTTGGTTTGAAAATCAGAACGCTATCtta
ccatcatcatcatcattgctcgaccTCAGTCgagacaaaaaaagaaaaag
aaagaaaaaaagacgtTATCTTACAATCACTCCTTAGGATTGTGTAATAA
GTACCCTTCTtgttacacacttttttttataagaatacactttataacaa
tgtccatgatgaaaatggtcaaaaaattaagaatatgctaagaatatcac
catcatggaattttgctattcaagctaagaatgccatttttaaagcattt
ttgattataaatagtcaattacccccaagtaaggctcgcTGCTCAAAGCT
TCTGCTTTCCTTCCAATTCCAATTGTTGACTCTTTGCGACATGTGCTTCT
TGTTGCACGTCCAATTCAGATCTGCTTCTTTTAGATTTTCTTCGCTATTT
AAACTTTTCTGATATTTGATAATTCGTTAATTTTCGAAACGTTTTGGTCA
CGTTTTTTGCAGGGGAAGGTACTTTTTCTTTCTGAAGGTAAATTCCTGAA
GAGATCACGTTTCTTGCAGGGAAAGTACTTACTTTGTGAAGGTAAATTCC
TGAAGGAATTATTGATCAAGTCCGAAACGTTTTGGCTACGTTTTTGCTAC
GTTTTTGCTGGAAAAGTACTTTTCTTTGTGAAGGTAAATTCCTGAAGGAA
TGTTTAAATATCTGAAGGATTTGTTTGATCAAAAGTCGGAAACGATTTGG
TTGCGTTTTCTCTAGGTTTTTCTTAATAGAAAGAATTTCAATTGTAAGCT
TATAAGCGAAATCGGCGTGCCATTCTTTTGGTATAATTTTTGGTGAAGTG
AAAAATTGTATAAAGAttcttttaaccctttaagtgccgatgtcgtatat
atacgacatgggctatataggagggcgaagccctcctgtaatgcccagtt
tgagttagaaatcgNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNcttctaattccttctagatcaggagatat
aagcccttaaagtttgaactagcgattttttaaaaaaaacttagaaaaaa
ggaccctggcactcaaagggttaagaagattttttgaacaatatatcttt
tgtgaagaaattttatagTTTTCACTTTATTCAAATATGATGAAGATTTT
TGTATTTCTTTGTATGATTGTGTTCATACGCAGTCATCCTTTGAACCATC
CAGGGGAAGAGAACCCAGCATTTGACTACATCAATGATGCTGATAAAGGT
TGGTATACACTTCTTTCGTTATTCGAGCATTCAATTCGAGAATTTTTTTC
CTATACAGtatcaattattttgatgatgcAAATTGActaatttagtctat
tttgaacGTTATTTATGACTTTTTCTACATTTAGATCTCGATAAAGAACA
TTTCGAAGAAGGCGATATTGTCAAAGTGCAAAATCGTGCTGCTTTGAAAA
AGGACCGGGGTCAATGGCCGAAAGGCATTGTTCCTTACACCATCTCAACT
GTTTTTAGTAAGTACATTTCTAATGATAAGTAGTCTGGATTTCCAGACCA
CTATTCTTTTAACACAAAACGTAGGAGCGATCCTGCctcaaagtcaaaaa
gaagaaaaaaggcCTTACGGGAAAGTTTTTCTACTACTGAAAAGAAGCTT
TTGAGTAAAAGTGATGTTAATTAGTAGTCTAGCTCTAGACTAATTGATAA
GCAATTGTTCAATCATAAAACCCCCGAGGTTATACTTTTTTTNGACTAAT
TGATAAGCAATTGTTCAATTATAAAACCGTCGAGgttatactttttttaa
atagtaAAGGCGTTTTGATACCAACGTTACATTCCAATAAAATCAACCTC
ATCCAGTCTTTAACCTTACTAATAGACTCCAAAATATTAGAGTCAGCTTA
TGTATTAACATACTTTttaggacggtagagtgacaaGGTGATTTTAAATA
ACCTGCAGTTCTGAACagcaaaataaaagtaaaagtgCTTGTTTACCGAC
GTCATCAAGTTAATCAAGATGAAGACATAGCAGAGAACTACAAGTCTCTA
ccgaagaaaaaaaacagatgCATACTTGCTATTATCTGGTATTGtgatac
tcttgtctcccgaatagacgggggggtccgaataagcaggggggtaggaa
aattttctaaattctaataagcgggggggggatggaataagagggaNNNN
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tgaaattttcagggtatgtTCAGGAAGGATAAAGGATCCTAAAAAGCCCT
ATATcccgaaattgataaatttttcaccaattttcaaaatctcatatgac
tacccccttaatcaattgtttttcttctttcagaGGAGCTTTCAGCAATG
GTAATGGAAACACAATCGAATGGAAAGCTAACCCTGATTTATCACTTGGT
GGAAATAAATTGTCTGAGAAAGATATAATGCAAATCAATTTGAAGTACTG
CGGTGACGTCAAACCTACCATTACAACTACAAGGACGACTAAAAAACGAA
CGACCACCACAAGAACTAAAACAACAACGAAGCGCCCAAAAACTACAAAG
ACCACCAAAATGACAACAACGACCCAACGGCCTGGAAAAGGTTGGAAAAT
GAAATAACTTTTCTTAATTATCATACAAAGATAGTACAAATTTTAGGGAT
AGTGTTGACGCTCCAGCGTCAGACCTGGTAAAgtaaaaaatcactaaaat
gaNCAATAAATCTTTATATTGCCTGAAAATGCCACACCAAATTTGATTTA
GTGTTCTGTCCCTATATATTCATCTTCGCTAAGAAAGTAAATAAAATTCT
CTGTTCTAagtagcctgttagacgaaaaccgcttttttatcgcgataaaa
caaagaaaaaatttggtttgtgggaaggtactggctatGTTCTAAGATGT
TCTGgcaataaaatattgaaactaTTATCACTGTTTATCTGTCAGTTTTG
TCAGTTGAGTTTAAATAGGAAAGTCTTTTTGAGTATGGAAAGTCTTCTGT
ATTTAACATactttaagggaacttattttggcggaaaCTAATTTAGACGa
aactcgccaaaattagttcccaccaaaatttaatattttgctCCATCgca
aaaataagttcccgccaaaattaaattttttgtttccttgcctaaatagc
ccctgaaattcaccaaaattagtacccggtaaaataagttcccttatgGT
ATTTTGATTCCAATATCGAATTCCATGCATCGAAAGCATGGAATTTCATT
ACCATAACCTTACCTTTTTTTATTTCCCCTAGTTGTTGGTCAATGGTTGG
TATGACAGGAGGTAGACAAAGTCTTTCCATCGGCAATGGGTGTTTATGGG
AAGGAACGATCATTCATGAGTTTCTTCATGCTATTGGATTTTATCATGAA
CAAAGTCGACCTGATCGTGACGAATACGTTAATATCATCTTCAGAAATAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033433XLOC_033433Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00052917-exon-scaffold_222-1491911889:353671..353756TCONS_00052917-exon-scaffold_222-1491911889:353671..353756Clytia hemisphaericaexon
TCONS_00052917-exon-scaffold_222-1510915933:353671..353756TCONS_00052917-exon-scaffold_222-1510915933:353671..353756Clytia hemisphaericaexon
TCONS_00052917-exon-scaffold_222-1575043694:353671..353756TCONS_00052917-exon-scaffold_222-1575043694:353671..353756Clytia hemisphaericaexon
TCONS_00052917-exon-scaffold_222-1491911889:354319..354344TCONS_00052917-exon-scaffold_222-1491911889:354319..354344Clytia hemisphaericaexon
TCONS_00052917-exon-scaffold_222-1510915933:354319..354344TCONS_00052917-exon-scaffold_222-1510915933:354319..354344Clytia hemisphaericaexon
TCONS_00052917-exon-scaffold_222-1575043694:354319..354344TCONS_00052917-exon-scaffold_222-1575043694:354319..354344Clytia hemisphaericaexon
TCONS_00052917-exon-scaffold_222-1491911889:370129..370270TCONS_00052917-exon-scaffold_222-1491911889:370129..370270Clytia hemisphaericaexon
TCONS_00052917-exon-scaffold_222-1510915933:370129..370270TCONS_00052917-exon-scaffold_222-1510915933:370129..370270Clytia hemisphaericaexon
TCONS_00052917-exon-scaffold_222-1575043694:370129..370270TCONS_00052917-exon-scaffold_222-1575043694:370129..370270Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_222supercontigscaffold_222:353671..370270 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.910897	0	0	0	0	2.00201	2.77682	3.46616	2.73719	3.81538	0	3.92231	11.0611	1.24769	0	78.7107	1.281	0.525375	0.0528749	5.02719	1.16163	0	4.3326	4.85266	5.86776	3.35552	1.97438	2.70994	3.60127	0.899322
Blast
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BLAST of TCONS_00052917 vs. Swiss-Prot (Human)
Match: MEP1A (Meprin A subunit alpha OS=Homo sapiens GN=MEP1A PE=1 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 2.980e-17
Identity = 37/77 (48.05%), Postives = 48/77 (62.34%), Query Frame = 1 
Query:   10 CMNFVEYGYRASNVPKNHVEVIRSGGCWSMVGMTGGRQSLSIGNGCLWEGTIIHEFLHAIGFYHEQSRPDRDEYVNI 240
            C++F  Y   +S +     +     GCWS VG     Q++SIG GC ++  I HE LHA+GFYHEQSR DRD+YVNI
Sbjct:  107 CVDFKPYEGESSYIIFQQFD-----GCWSEVGDQHVGQNISIGQGCAYKAIIEHEILHALGFYHEQSRTDRDDYVNI 178
The following BLAST results are available for this feature:
BLAST of TCONS_00052917 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MEP1A2.980e-1748.05Meprin A subunit alpha OS=Homo sapiens GN=MEP1A PE... [more]
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