|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00052867 ID=TCONS_00052867|Name=TCONS_00052867|organism=Clytia hemisphaerica|type=transcript|length=1469bp
CTTCTTCAACAACAACTAGGACAAGTTTtgcaacagcaacaacaacctCA
AACTCAACATCAATTGTGTACGAACGAACTGCCTGCTATTCCAGCCAAGA
TTATCAAACAAATAAAGAATGGTCGACGCATTCAAATTAGTCTGTCCCGA
ATCTTGTCCGTACCCATCAATTCCACCAGTCTCTTCAATGGATCTCTTGG
CAAAGATCTTGTTGGGCTCTTAAAAGACTCGTTGGCCCCTTCCACCCAAT
CCACCTATATGTGCGGCACCCGCTCCTACCTCAATTTTTGCGAGACATCT
GGTTTGACCCCATTTCCTGTTTCAGAGTCTTCGTTGTGTTTCTTTGCTGT
CTTCTCTTTTAATCGTGGTATAGCTTGCAAAACCATTAAAGTATACATTA
CAGGAGTACTACACCAAAACACCATGCTGGGTTCCAATGCATCCCTACCC
CTTATGCCCGTCCTTCACAAACTCGTCCGAGGTATCCGACGTCGCCAAGG
CAACTCCTTAACCCGCAAACAAAGAAAACCTATCACCATGTCCCACCTGC
GAATTATTTCCAACTTTTTACTGTGCAGTGGTCACCCTACACACGATAAA
TACATGCTCCTGACTGCTTGCCTTACAGCCTTTTTTGGCTTTTTGAGAGT
TTCTGAATTTACTTGCCCATCACTCAGTTCGTATGACCCAACAGCACACC
TCCAAAGATCGGATATTACGTTTAACCCGGATTTTTCAATTATGTCCGTC
CGAATCAGGGCAAGTAAGACTGATCCTTTTCGACTTGGTGTGACCATCCG
AATTGCCGCCACCTTCGACCAAATTTGCCCTGTGGGTGCAATGAGGAACT
ATCTAGCCATGCGTGATTCATCAATTGGCCCGctctttaaatttttagat
gGCAAATTTCTAACGCGCAGGATAGTTCATGATCTTCTCGGAAAGTCCCC
CCCGCTTGAACACAATTTGAATACCCATAGTTTTCGCATTGGTGGTGCTT
CAGCTGCCCTCTCAGCAGGTGTATCTGACTCAATGATACGCATCATGGGT
AGATGGTCTAGTGATTGCTATCTTAGGTATCTCAGAATCTCTGACCGAGA
TATTTCGAAATTTAACACTAACATGGCTAAGGTAACTTTTGTTTCGTCCA
CCTGGGACCCAAATAATTGGTGatttatataaattttatctCTATTATGT
TATACTTTACTATTTGTACCCTATCTAATGTCTAATTACGTGGCAATATT
TCCCTCAGATTAATTTGTTTgtcctttcttttttttaatctttatcTACT
CCCTTCATTTCCTCCTTTCCTActccccatttttcttttaattaaaattt
ggaCTTGGGTGACGTTGGGGTGTTGGGTTACTACGTAACCTTGGCAAGTC
AGTAGGCAGTTACTTAGATACATCCCCTAAGGTCAAGGATCCAGTTAGTT
AGATACATCCCCTAAGGTC Run BLAST on NCBI protein sequence of TCONS_00052867-protein >TCONS_00052867-protein ID=TCONS_00052867-protein|Name=TCONS_00052867-protein|organism=Clytia hemisphaerica|type=polypeptide|length=390bp
LLQQQLGQVLQQQQQPQTQHQLCTNELPAIPAKIIKQIKNGRRIQISLSR
ILSVPINSTSLFNGSLGKDLVGLLKDSLAPSTQSTYMCGTRSYLNFCETS
GLTPFPVSESSLCFFAVFSFNRGIACKTIKVYITGVLHQNTMLGSNASLP
LMPVLHKLVRGIRRRQGNSLTRKQRKPITMSHLRIISNFLLCSGHPTHDK
YMLLTACLTAFFGFLRVSEFTCPSLSSYDPTAHLQRSDITFNPDFSIMSV
RIRASKTDPFRLGVTIRIAATFDQICPVGAMRNYLAMRDSSIGPLFKFLD
GKFLTRRIVHDLLGKSPPLEHNLNTHSFRIGGASAALSAGVSDSMIRIMG
RWSSDCYLRYLRISDRDISKFNTNMAKVTFVSSTWDPNNW Run BLAST on NCBI transcript from alignment at scaffold_220:501135..505753- Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00052867 ID=TCONS_00052867|Name=TCONS_00052867|organism=Clytia hemisphaerica|type=transcript|length=4619bp|location=Sequence derived from alignment at scaffold_220:501135..505753- (Clytia hemisphaerica)
CTTCTTCAACAACAACTAGGACAAGTTTTGCAACAGCAACAACAACCTCA
AACTCAACATCAATTGTGTACGAACGAACTGCCTGCTATTCCAGCCAAGA
TTATCAAACAAATAAAGAATGGTGAGTTCATTGACTTTGACCTCTTGCTG
CCTAGCAATATTGGTAGGCCTGCCAATACTTCTGTAGCATTTGCCTTCGA
TGGAGATGGAAATATATATCTCCAACAGCGTAGTGACTCTAGTCTGTTTA
CAAAAAAAGCTAAGGTTATTGACCTAAATTCATGGCTGATGGCGTGGTCC
AGGTTCATTCAAGCCACCTTGGTTTTTCGCCCTTTTCTCGTCAACCAGTT
GATTGCATACCAAGTGTATATTGCACAACTAGCCAACGATTACTTTTTTA
ATGGGTGGTATGTATATGACAAAGCCTTCAGAACTTACATCGCAAACAAC
CCCACTGCTAGGTGGGATATTACTAATACAACATTATTCAACATGCACCT
CCAGGGTCAAAGGGAGCCTAGCAAATGTTACCTTTGCCAAAGCAAGGACC
ATCTTGCCCCTCGATGCCCCGCGTCTTCTGCTTCCCTTTCTGGTCGGTCG
TCCTTGAATCTTGGCTCAGCTCCTCAACCTGCACACCACACCCCTCGTTT
GCCTTCCCAGCCTGGCCCTCGCCCTCGGCCCCCTTCTTTTCCTCGTGCAC
AGTACTTCCAACCCTACCCTTCCCTCCGCCAGCCCTTTCCTAACCCCCAG
CAAGCTTCCTCTGCTGCCAATACCACGAAGCAATGCCATCTTTTCAACAC
AATCTTTTCAACACAAGCCTCCCTTGTCGTCCCGGCTGCAGGTACGTCCA
CACCTGCCTCATCTGCAGCGACAACCACCCAGCCCTCCAGTGCCCCTACC
GTTAGCGATTTTCAAACCCTACTTGACTTTCCCTCCTTTTCCTTTCTCCC
CTCTCCCTCTAAGCCAGCCACCTCTGTGAAACCTGAAGTGCTCCACGAAT
TNCCAGCCCTCCAGTGCCCCTACCGTTAGCGATTATCAAACCCTACTTGA
CTTTCCCTCCTTTTCCTTTCTCCCCTCTCCCTCTAAGCCAGCCACCTCTG
TGAAACCTGAAGTGCTCCATGAATGGCTCTCTGGGTATGACCCTGAAATA
AGAGATTTTTTAGTGTCCGGGTTTTTCTATGGATTCCACATTGGATTTCA
AGGGCCCCCTCCCTCAGGACCTGAACGCAACAACCTTTCGGCCGATTCTA
ACGGTGAGGCTGTGTCTACAGCCATCTTGAAAGAATTGAAGCGGGGACAT
ACCGCAGGCCCCTTCGACTCCCACCCTCTACCTTCCTTCTTCTGTTCCCC
ACTTGGTGCTGCCCCAAAGAAAGATGGAACCCAACGTGTCATCCTGGACT
TATCCCCCCCTGGCTCTTCTGTTAATGATGGAATCCCTATCAATCTAACT
CATGTGGAATACACATCCTTTGATGAAGCCCTCAACATGATCCGCCTAGT
GGGCCCAGGTTGTTTTATGGGAAAAATCGACATTAAGCATGCCTTTCGCC
TATGCCCCGTTCACCCTGATGACTGGCCCCTTCTAGGTTACCATTGGCAA
GGTAGGTATTCTTTTGATCTTTGTCTCCCTTTTGGCAGCCGATCCTCCCC
CTGTATTTTCAACATGTTTGCTGAAGCTCTGCAGTGGATTCTTGTACATA
AATGTCTTCTATCTGCTCTCTCCCACTATCTTGACAACTTCATTCTGTGT
GCGGTTACTTCAGTCGAAACTCAGCATAAGATGAATGTTACACAGGCTCT
CTTCAAGGGCGTTGGTGTTCCCATCGCTTTGGACAAATTGGAAGGCCCAA
GTCAGGTGATGTCTTATCTTGGTATTGAAATTGACACTGTATCTTCTCTT
ATTCGNTCCTTGAATCTTGGCTCAGCTCCTCAACCTGCACACCACACCCC
TCGTTTGCCTTCCCAGCCTGGCCCTCGCCCTCGGCCCCCTTCTTTTCCTT
GTGCACAGTACTTCCAACCCTACCCTTCCCTCTGCCAGCCCTTTCCTAAC
CCCCAGCAAGCTTCCTCTGCTGCCAATACCACGAAGCAATGCCATCTTTT
CAACACAAGCCTCCCTTGTCGCNTTCGATGTTTCCAACCTTACCCACATA
TCCTTCCTTGAGATCTTTGCTGCTTTTGTATCTTTAACAACATGGACTGA
GTTTTTTAGGGATTGTAGGATTGTTGTGTTTTCTGACAATGAGGCTACAG
TTTCGGTCTGGTCGTCTTCTTCTTCAAAAGACAAGCAAATGATGGCAATT
ATTAGGGAGATCTTTTTTATTACCGCTAAGAAGAATATCCTCCTTTCCGT
CCGTCACATCCCGGGTTCCGATAATGTTTTTGCTGATCTCTTGTCCCGTT
TACAGGTCGACGCATTCAAATTAGTCTGTCCCGAATCTTGTCCGTACCCA
TCAATTCCACCAGTCTCTTCAATGGATCTCTTGGCAAAGATCTTGTTGGG
CTCTTAAAAGACTCGTTGGCCCCTTCCACCCAATCCACCTATATGTGCGG
CACCCGCTCCTACCTCAATTTTTGCGAGACATCTGGTTTGACCCCATTTC
CTGTTTCAGAGTCTTCGTTGTGTTTCTTTGCTGTCTTCTCTTTTAATCGT
GGTATAGCTTGCAAAACCATTAAAGTATACATTACAGGAGTACTACACCA
AAACACCATGCTGGGTTCCAATGCATCCCTACCCCTTATGCCCGTCCTTC
ACAAACTCGTCCGAGGTATCCGACGTCGCCAAGGCAACTCCTTAACCCGC
AAACAAAGAAAACCTATCACCATGTCCCACCTGCGAATTATTTCCAACTT
TTTACTGTGCAGTGGTCACCCTACACACGATAAATACATGCTCCTGACTG
CTTGCCTTACAGCCTTTTTTGGCTTTTTGAGAGTTTCTGAATTTACTTGC
CCATCACTCAGTTCGTATGACCCAACAGCACACCTCCAAAGATCGGATAT
TACGTTTAACCCGGATTTTTCAATTATGTCCGTCCGAATCAGGGCAAGTA
AGACTGATCCTTTTCGACTTGGTGTGACCATCCGAATTGCCGCCACCTTC
GACCAAATTTGCCCTGTGGGTGCAATGAGGAACTATCTAGCCATGCGTGA
TTCATCAATTGGCCCGCTCTTTAAATTTTTAGATGGCAAATTTCTAACGC
GCAGGATAGTTCATGATCTTCTCGGAAAGTCCCCCCCGCTTGAACACAAT
TTGAATACCCATAGTTTTCGCATTGGTGGTGCTTCAGCTGCCCTCTCAGC
AGGTGTATCTGACTCAATGATACGCATCATGGGTAGATGGTCTAGTGATT
GCTATCTTAGGTATCTCAGAATCTCTGACCGAGATATTTCGAAATTTAAC
ACTAACATGGCTAAGGTAACTTTTGTTTCGTCCACCTGGGACCCAAATAA
TTGGTGATTTATATAAATTTTATCTCTATTATGTTATACTTTACTATTTG
TACCCTATCTAATGTCTAATTACGTGGCAATATTTCCCTCAGATTAATTT
GTTTGTCCTTTCTTTTTTTTAATCTTTATCTACTCCCTTCATTTCCTCCT
TTCCTACTCCCCATTTTTCTTTTAATTAAAATTTGGACTTGGGTGACGTT
GGGGTGTTGGGTTACTACGTAACCTTGGCAAGTCAGTAGGCAGTTACTTA
GATACATCCCCTAAGGTCAAGGATCCAGTTAGATCTGGATTAGGTTCGCA
CACTGTATTCCCAACGGTGTTAAGGTTCGCCAGGGCAACCTCCCTGTTTA
TATCAACCTCCGTCATCAAAACGGGGCTAGGGGGCGACACCTGTCATCAA
AACAGGCTAGGAAAACAGGACACCCGTCGTCAAAACGGGTTAGGCTCTCA
GTTATATATATCTTGATGCATCCCCAATGTCATCCCAAGTTCTATTATAC
ATTTTCGGCATTCTTGTTTACGTTTCGAAATATACTGTTTCATCACCGCA
CAATTACGTTTCTTTAACTTCTTGTTTGCTCATATCCTTTGGTACCTAGA
TCAGTCCATTTCGACCACTTTCAAAAACCTCTCGTACCTTTTCTACTTTG
GCTGCTTAATTTATTTCCTCAACCTCCTAGGGCCTCATACTTTAATCTAA
TCTGAGACGTGGGAATTAATTGGAGCTAAACCTTAGCTTAGGTTAATTCC
AAGTCGAATGAAGTACATCCCGCCACTGTGCCGAGGCGGTTAAGAAATAG
TATATTTCGGCTGCCGGTTGTTCTTCCCTTGCCTATATATATTCTAGTGT
CAAGCCCTCTTCAAGCTGAGCCTGTATTAATTGCGACTTTAATCTTTCCC
TCCCACCCTCCCCCTGCTTGCCCCCTGTAGTTTCGGTTCTGCTCTCTGCT
TCTTCTATTTTTTTCTCTTTTAGTTATATATCAACTGCGTTCTCATCAGA
GCATGGTAACTGCTGCTGCGACGGATCCTGATCTCATGGTTTCCTCTGGG
CAAGGCTGTGTTAACCAGAGATTAGGTCATTTGGGTTGCATCATGATACG
TTTAGTGTTGGGTTACTACGTAACCTTGGCAAGTCAGTAGGCAGTTACTT
AGATACATCCCCTAAGGTC Coding sequence (CDS) from alignment at scaffold_220:501135..505753- >TCONS_00052867 ID=TCONS_00052867|Name=TCONS_00052867|organism=Clytia hemisphaerica|type=CDS|length=2346bp|location=Sequence derived from alignment at scaffold_220:501135..505753- (Clytia hemisphaerica)
GTCGACGCATTCAAATTAGTCTGTCCCGAATCTTGTCCGTACCCATCAAT
TCCACCAGTCTCTTCAATGGATCTCTTGGCAAAGATCTTGTTGGGCTCTT
AAAAGACTCGTTGGCCCCTTCCACCCAATCCACCTATATGTGCGGCACCC
GCTCCTACCTCAATTTTTGCGAGACATCTGGTTTGACCCCATTTCCTGTT
TCAGAGTCTTCGTTGTGTTTCTTTGCTGTCTTCTCTTTTAATCGTGGTAT
AGCTTGCAAAACCATTAAAGTATACATTACAGGAGTACTACACCAAAACA
CCATGCTGGGTTCCAATGCATCCCTACCCCTTATGCCCGTCCTTCACAAA
CTCGTCCGAGGTATCCGACGTCGCCAAGGCAACTCCTTAACCCGCAAACA
AAGAAAACCTATCACCATGTCCCACCTGCGAATTATTTCCAACTTTTTAC
TGTGCAGTGGTCACCCTACACACGATAAATACATGCTCCTGACTGCTTGC
CTTACAGCCTTTTTTGGCTTTTTGAGAGTTTCTGAATTTACTTGCCCATC
ACTCAGTTCGTATGACCCAACAGCACACCTCCAAAGATCGGATATTACGT
TTAACCCGGATTTTTCAATTATGTCCGTCCGAATCAGGGCAAGTAAGACT
GATCCTTTTCGACTTGGTGTGACCATCCGAATTGCCGCCACCTTCGACCA
AATTTGCCCTGTGGGTGCAATGAGGAACTATCTAGCCATGCGTGATTCAT
CAATTGGCCCGCTCTTTAAATTTTTAGATGGCAAATTTCTAACGCGCAGG
ATAGTTCATGATCTTCTCGGAAAGTCCCCCCCGCTTGAACACAATTTGAA
TACCCATAGTTTTCGCATTGGTGGTGCTTCAGCTGCCCTCTCAGCAGGTG
TATCTGACTCAATGATACGCATCATGGGTAGATGGTCTAGTGATTGCTAT
CTTAGGTATCTCAGAATCTCTGACCGAGATATTTCGAAATTTAACACTAA
CATGGCTAAGGTAACTTTTGTTTCGTCCACCTGGGACCCAAATAATTGGT
GACTTCTTCAACAACAACTAGGACAAGTTTTGCAACAGCAACAACAACCT
CAAACTCAACATCAATTGTGTACGAACGAACTGCCTGCTATTCCAGCCAA
GATTATCAAACAAATAAAGAATGGTCGACGCATTCAAATTAGTCTGTCCC
GAATCTTGTCCGTACCCATCAATTCCACCAGTCTCTTCAATGGATCTCTT
GGCAAAGATCTTGTTGGGCTCTTAAAAGACTCGTTGGCCCCTTCCACCCA
ATCCACCTATATGTGCGGCACCCGCTCCTACCTCAATTTTTGCGAGACAT
CTGGTTTGACCCCATTTCCTGTTTCAGAGTCTTCGTTGTGTTTCTTTGCT
GTCTTCTCTTTTAATCGTGGTATAGCTTGCAAAACCATTAAAGTATACAT
TACAGGAGTACTACACCAAAACACCATGCTGGGTTCCAATGCATCCCTAC
CCCTTATGCCCGTCCTTCACAAACTCGTCCGAGGTATCCGACGTCGCCAA
GGCAACTCCTTAACCCGCAAACAAAGAAAACCTATCACCATGTCCCACCT
GCGAATTATTTCCAACTTTTTACTGTGCAGTGGTCACCCTACACACGATA
AATACATGCTCCTGACTGCTTGCCTTACAGCCTTTTTTGGCTTTTTGAGA
GTTTCTGAATTTACTTGCCCATCACTCAGTTCGTATGACCCAACAGCACA
CCTCCAAAGATCGGATATTACGTTTAACCCGGATTTTTCAATTATGTCCG
TCCGAATCAGGGCAAGTAAGACTGATCCTTTTCGACTTGGTGTGACCATC
CGAATTGCCGCCACCTTCGACCAAATTTGCCCTGTGGGTGCAATGAGGAA
CTATCTAGCCATGCGTGATTCATCAATTGGCCCGCTCTTTAAATTTTTAG
ATGGCAAATTTCTAACGCGCAGGATAGTTCATGATCTTCTCGGAAAGTCC
CCCCCGCTTGAACACAATTTGAATACCCATAGTTTTCGCATTGGTGGTGC
TTCAGCTGCCCTCTCAGCAGGTGTATCTGACTCAATGATACGCATCATGG
GTAGATGGTCTAGTGATTGCTATCTTAGGTATCTCAGAATCTCTGACCGA
GATATTTCGAAATTTAACACTAACATGGCTAAGGTAACTTTTGTTTCGTC
CACCTGGGACCCAAATAATTGGTGACTTCTTCAACAACAACTAGGACAAG
TTTTGCAACAGCAACAACAACCTCAAACTCAACATCAATTGTGTACGAAC
GAACTGCCTGCTATTCCAGCCAAGATTATCAAACAAATAAAGAATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00052867-exon-scaffold_220-1575043694:505633..505753 | TCONS_00052867-exon-scaffold_220-1575043694:505633..505753 | Clytia hemisphaerica | exon |
| TCONS_00052867-exon-scaffold_220-1575043694:502022..503348 | TCONS_00052867-exon-scaffold_220-1575043694:502022..503348 | Clytia hemisphaerica | exon |
| TCONS_00052867-exon-scaffold_220-1575043694:501135..501155 | TCONS_00052867-exon-scaffold_220-1575043694:501135..501155 | Clytia hemisphaerica | exon |
| TCONS_00052867-exon-scaffold_220-1510915933:505633..505753 | TCONS_00052867-exon-scaffold_220-1510915933:505633..505753 | Clytia hemisphaerica | exon |
| TCONS_00052867-exon-scaffold_220-1510915933:502022..503348 | TCONS_00052867-exon-scaffold_220-1510915933:502022..503348 | Clytia hemisphaerica | exon |
| TCONS_00052867-exon-scaffold_220-1510915933:501135..501155 | TCONS_00052867-exon-scaffold_220-1510915933:501135..501155 | Clytia hemisphaerica | exon |
| TCONS_00052867-exon-scaffold_220-1491911889:505633..505753 | TCONS_00052867-exon-scaffold_220-1491911889:505633..505753 | Clytia hemisphaerica | exon |
| TCONS_00052867-exon-scaffold_220-1491911889:502022..503348 | TCONS_00052867-exon-scaffold_220-1491911889:502022..503348 | Clytia hemisphaerica | exon |
| TCONS_00052867-exon-scaffold_220-1491911889:501135..501155 | TCONS_00052867-exon-scaffold_220-1491911889:501135..501155 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_220 | supercontig | scaffold_220:501135..505753 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003677 | DNA binding |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006310 | DNA recombination |
| GO:0015074 | DNA integration |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0015074 |
DNA integration |
| biological_process |
GO:0006310 |
DNA recombination |
| molecular_function |
GO:0003677 |
DNA binding |
Blast
The following BLAST results are available for this feature:
|
