TCONS_00052735 (transcript) - C. hemisphaerica

Overview
NameTCONS_00052735
Unique NameTCONS_00052735
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length828

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00052735 ID=TCONS_00052735|Name=TCONS_00052735|organism=Clytia hemisphaerica|type=transcript|length=828bp
actcaataaaaaatggcgttcgtgtcttttcgcactttttttagcctaga
cgatgtagcaaacatataagtataagcacactgtgcttttaattggctga
atttTACTCTGCCAAATATTACTCTGCACCTTAGTCAGAAagtctgccgt
atactatcttcgctttttgatttgaatgatggcgctgcgatattttttcc
accatcagattatcaaaggcaaaaaatagtTGAGCTCCAGATCCTGGACT
ATCTGCACCTTTGCTGTCGATTTTCAGCTtaagtttatgtctaatgttat
ggtttttcaGAGGGCTTGTTCTAAGAGAAGAGAGTTTTCAAGAGAGGCAA
ATTTAGTCTTTCTCCTACAAGATTATACTTTAATACAATTTAATATGACA
GATGGAAAGACAAAAAGGTCTATGTCAACACACCTCATCTACTTTTGCCA
TTAGGAAAAATAGGAGGGTCCAAATgcttttgaaagttccctcttttgcc
ctaagtCTGCTGtatagcctccttttcaaaagtacATTTTTACTGCAACC
CTCCtacttattaagttttgagaataTTTCCATCCATCCCACTTATTCCA
GTTTGTTAGGGACCAGAGGCTAGATTAACTTTCATTACATTTCTGCAAAT
TTTATATGGTGCAAAGCAAGCGCTTCTTTTAAGCCCTACCTTGAGGGAAT
TACTTCTTTATTTTCTCGTTTACAGATTTGTTGacgtttttttttgaaaa
ataaagataaacagacaaaaatttgatttctttttgttctTCTGACCTAA
TCTAATTTgcctttaaaaatttttaaat
Run BLAST on NCBI

transcript from alignment at scaffold_219:938..1765

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00052735 ID=TCONS_00052735|Name=TCONS_00052735|organism=Clytia hemisphaerica|type=transcript|length=828bp|location=Sequence derived from alignment at scaffold_219:938..1765 (Clytia hemisphaerica)
atttaaaaatttttaaaggcAAATTAGATTAGGTCAGAagaacaaaaaga
aatcaaatttttgtctgtttatctttatttttcaaaaaaaaacgtCAACA
AATCTGTAAACGAGAAAATAAAGAAGTAATTCCCTCAAGGTAGGGCTTAA
AAGAAGCGCTTGCTTTGCACCATATAAAATTTGCAGAAATGTAATGAAAG
TTAATCTAGCCTCTGGTCCCTAACAAACTGGAATAAGTGGGATGGATGGA
AAtattctcaaaacttaataagtaGGAGGGTTGCAGTAAAAATgtacttt
tgaaaaggaggctataCAGCAGacttagggcaaaagagggaactttcaaa
agcATTTGGACCCTCCTATTTTTCCTAATGGCAAAAGTAGATGAGGTGTG
TTGACATAGACCTTTTTGTCTTTCCATCTGTCATATTAAATTGTATTAAA
GTATAATCTTGTAGGAGAAAGACTAAATTTGCCTCTCTTGAAAACTCTCT
TCTCTTAGAACAAGCCCTCtgaaaaaccataacattagacataaacttaA
GCTGAAAATCGACAGCAAAGGTGCAGATAGTCCAGGATCTGGAGCTCAac
tattttttgcctttgataatctgatggtggaaaaaatatcgcagcgccat
cattcaaatcaaaaagcgaagatagtatacggcagactTTCTGACTAAGG
TGCAGAGTAATATTTGGCAGAGTAaaattcagccaattaaaagcacagtg
tgcttatacttatatgtttgctacatcgtctaggctaaaaaaagtgcgaa
aagacacgaacgccattttttattgagt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033338XLOC_033338Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00052735-exon-scaffold_219-1491911889:938..1765TCONS_00052735-exon-scaffold_219-1491911889:938..1765Clytia hemisphaericaexon
TCONS_00052735-exon-scaffold_219-1510915933:938..1765TCONS_00052735-exon-scaffold_219-1510915933:938..1765Clytia hemisphaericaexon
TCONS_00052735-exon-scaffold_219-1575043694:938..1765TCONS_00052735-exon-scaffold_219-1575043694:938..1765Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_219supercontigscaffold_219:938..1765 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.69018	2.70209	3.58864	3.88902	2.72091	1.28262	1.40456	1.1763	1.31071	1.44529	1.97201	1.78214	1.53479	2.10848	0.878718	1.79086	1.00131	0.798288	1.63217	1.08914	2.10745	1.48794	1.18634	1.01828	0.816866	2.04456	3.37936	2.73205	3.25658	3.01292
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00052735 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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