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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00052645 ID=TCONS_00052645|Name=TCONS_00052645|organism=Clytia hemisphaerica|type=transcript|length=6585bpRun BLAST on NCBI protein sequence of TCONS_00052645-protein >TCONS_00052645-protein ID=TCONS_00052645-protein|Name=TCONS_00052645-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1004bp MTKMVQSAKDGGMKKQENNGDLNQSNSSAKQSSKQQKKLLEDDNVCKNCSRun BLAST on NCBI transcript from alignment at scaffold_218:799057..876432+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00052645 ID=TCONS_00052645|Name=TCONS_00052645|organism=Clytia hemisphaerica|type=transcript|length=77376bp|location=Sequence derived from alignment at scaffold_218:799057..876432+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_218:799057..876432+ >TCONS_00052645 ID=TCONS_00052645|Name=TCONS_00052645|organism=Clytia hemisphaerica|type=CDS|length=42210bp|location=Sequence derived from alignment at scaffold_218:799057..876432+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00052645 vs. Swiss-Prot (Human)
Match: NAV2 (Neuron navigator 2 OS=Homo sapiens GN=NAV2 PE=1 SV=3) HSP 1 Score: 214.927 bits (546), Expect = 1.948e-55 Identity = 123/366 (33.61%), Postives = 203/366 (55.46%), Query Frame = 3
Query: 4635 LPC----------QMFLKGNNEWSLASMAYDTLIPKTYLEKYVSLILTHRQVVFYGPSGTGKSYIARRIATIISHR----MNNNTIPMLTYKNMTPE---QWXXXXXXXXXXXRNQ---PYVILVDGFASNFIKQGKDLTEIISTSESIHPQPYVICTLTQS----PNYEIPSTWQNNFKWIWLPNHEEPINGVLQRFLRRRY--TQHGHKDTYQEVFRVADWLAETWRYINTILEKFNSAECTIGPTMFYTCPIDINAAEEWFIDLWNYSITPYFLHAIKCGIKLYGQRHQWIDPLDWILKSYPWKPNTTPGKVDKKTKLRRIRPEDVGF-------QTSCNNTQPQVDSESEKQRLLDFLRQLE 5633
LPC + +KG E SL S+ +++LIPK L++YVSL++ HR+++ GPSGTGK+Y+A R++ I R + + I + + + Q+ L D N++ N P VI++D + G+ +++ H PY+I T+ Q+ PN ++ +NF+W+ NH EP+ G L RFLRR+ T+ + E+ ++ DW+ + W ++N LE +S++ TIGP +F +CPID++ + WF DLWNYSI PY L A++ G++LYG+R W DP W++ +YPW + + + L ++RPEDVGF + S + P D+E + L++ L +L+
Sbjct: 2102 LPCGYLVGENTTISVTVKGLAENSLDSLVFESLIPKPILQRYVSLLIEHRRIILSGPSGTGKTYLANRLSEYIVLREGRELTDGVIATFNVDHKSSKELRQYLSNLADQCNSENNAVDMPLVIILDNL-HHVSSLGEIFNGLLNCK--YHKCPYIIGTMNQATSSTPNLQL----HHNFRWVLCANHTEPVKGFLGRFLRRKLMETEISGRVRNMELVKIIDWIPKVWHHLNRFLEAHSSSDVTIGPRLFLSCPIDVDGSRVWFTDLWNYSIIPYLLEAVREGLQLYGRRAPWEDPAKWVMDTYPWAASP---QQHEWPPLLQLRPEDVGFDGYSMPREGSTSKQMPPSDAEGDP--LMNMLMRLQ 2455 The following BLAST results are available for this feature:
BLAST of TCONS_00052645 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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