TCONS_00052637 (transcript) - C. hemisphaerica

Overview
NameTCONS_00052637
Unique NameTCONS_00052637
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1317

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00052637 ID=TCONS_00052637|Name=TCONS_00052637|organism=Clytia hemisphaerica|type=transcript|length=1317bp
ggctaaaaaataaaaattcgaaaattaaaaacaaatagaaaataaaaatg
ccAAAAGGTGGTTATGATGTTGAATTGGTGAATGGTGAACTGGAGAATGA
TATCACGTGTTCAATCTGTTTGTTCATTTTGAAAGATCCTATGCAAGCCA
TAGAATGTGGACATCGATTTTGTAAAACTTGTGTTGCTGGTCTTCAAAAG
GGCATTAATGGCAATTATATCTGTCCACAAGATCGAATTGAAACGCCCcT
TTATCCTGATAAAGGAAAAGGTCGAGAGATTTCGAACTTAATTGTTAAAT
GTTCTAGAAACAAACTGGGTTGTGCTTGGATCAAAGAACTGCGTGAATTA
GACAATCATTTGGCTCAATGTGAATTTGAACTAGTGCAATGTGTTATCGA
AGCCTGCTCCATGACTTTTCAACGACAGTTTGAAAATGAACACTATTCTA
AAGAGTGTTATTACAGGCTGAAAATGTGTTCGTTTTGTTCGGAAGAATAT
ATACTGGCGTATGAAGAGGAACACATCGAAGATTGTGAACAATTTCCACT
TTGCTGTGATTTTTGTAACGCCGTAGAAATCGCCAAATCTGAGATGGAAA
CGCACTTATTACAAGATTGTAAAAAACTACGTCATTCATGTCCATTCGCT
AATCTTGGTTGTGAGAAAAAGATGTTTTTAGAAGACCTAAAAGTACACGA
GGCAAACTCACATGACTACCATTTGCAACTAGCATCTAATAAGATTGCTC
TACAAGATCAAGTCATCAGCGAACAAACACAAAATGTAGAAATGCTATTG
CGAAAAATCGAAAAGCTCGAAAATAAACCCTCTGTGTTAAGTGATGTTCA
TGTTTGGAGCATTCCATCTTTCACTAGAGAAATCGAAAAGGCTGAAGAAA
ATTTGTATCTTTCCAAATTGATTTATACAGCCGATGGGTATAAGATGGAA
TTCCTCCTATACCCTAACGGTGATCTCGATAGAGCTGTCAGCTGCTTTTG
TAAAAGCGTTGAGGGTTCTTTCGCTGATTTATTGAAATGGccgatgaaaa
aagtgattCGAGTTTCGATCCTTGATAAGAATGACAATTTGAAAAGTGTA
TGTAAACTCAAAACTGAAAATCATAATTCGTTCAAGGAGCCAGTTCACAA
ACACAAACCTAGAGGCTGGAAAAGATTTATTCCACACGATCAATTACCCA
TACTCCTTCATAACGACACCTTAACTTTGAAGATAAACATTAGCGACGCa
gtttaatttatttttctgttacTTCTTTTTAGTTGATTTGTTTTCCAATA
TTCAACGCATATAGTAA
Run BLAST on NCBI

transcript from alignment at scaffold_218:729572..739132+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00052637 ID=TCONS_00052637|Name=TCONS_00052637|organism=Clytia hemisphaerica|type=transcript|length=9561bp|location=Sequence derived from alignment at scaffold_218:729572..739132+ (Clytia hemisphaerica)
ggctaaaaaataaaaattcgaaaattaaaaacaaatagaaaataaaaatg
ccAAAAGGTGGTTATGATGTTGAATTGGTGAATGGTGAACTGGAGAATGA
TATCACGTGTTCAATCTGTTTGTTCATTTTGAAAGATCCTATGCAAGCCA
TAGAATGTGGACATCGATTTTGTAAAACTTGTGTTGCTGGTCTTCAAAAG
GGGTAATATTCACagtataaacttttaatttggtaccttattggtattaa
atttcgcgggttaCAAAGTTTCACGatttgcgaaattttttcgaggaAAC
GTGTCTCgtgtgtattaaatttcgcgattcactaaattggGCATTTTCAA
AAGGTGGGAATAAAGTAAGAAAAtaactgattttgcttgaaacacaacat
ATTGGGTAtaaacataccaaaaatagtaattaagtgtaacaaataagtat
tttcgatttttggcgtattttgaaaatttttcgcgtgtatttaatttcgc
gattttgtatttttgaaaaatttaaattttaaaattaaaaatttaatttc
gcggaatttgacctataaatcgcgaaattaagtacccgcgaaattttgta
acccgcgaaatttaataccaataaggtagtcGATATTTTACATACAATTT
CTTTAGCAGGTCCTGCAAAACTGATCTTAACATCGTTTTGATAAAAGGTT
TATGTGTTAAAAAGGTGAAAAAGAGGTTTCCGATGGCTAGGTTTGTATCA
TTATCTCGCTATTAAacactttcaatatttttcagagAATTTGATTGGTC
TTACTTTTCAATTAACAGCATTAATGGCAATTATATCTGTCCACAAGATC
GAATTGAAACGCCCGTAAGAAcgaatacatttttttttaagaaagactac
tttctttttaattgggATATTATTACCAAAGCTCTTATTTTCTAACTAGA
TTCTATCCCAAGCTAAATTCTATTCTATGCTTTTTCCCAAAGTGTGACAT
TTTTCTATATGCTGtgctatttctttttttcatttttctcttttcagcTT
TATCCTGATAAAGGAAAAGGTCGAGAGATTTCGAACTTAATTGTTAAATG
TTCTAGAAACAAACTGGGTTGTGCTTGGATCAAAGAACTGCGTGAATTAG
ACGTAAGTGTGCGTTTAAGCATTTCTAAATTCTCTCTATCAGACTTTAGT
AGCTTGGACtgtatactttaggcgtacaaacttttgcgagcagaaacttt
cgcgaggtcgaaaaattgCGAAATTGACGACATTTAGTTACTTTCacgaa
tttgagaaaaaaaaaactttcgcgagcataaactttcgcgtaTCGTtaga
taaaaatgagaattttcgaatgaaaattgccttaaaagtgaaaaatattc
cttaaatccgATAAAAACGGTTGCTCCtcgactttaaaaaggcattaaag
gataaaaatattccaaaaagaatttccaaagACATACGCCTAAACAGGCC
TAAAGtattattattttgtttatttcaaatttattttttcagaacCTTCT
TATCAAGTCATTTTTTCTCCACTAGAATCATTTGGCTCAATGTGAATTTG
AACTAGTGCAATGTGTTATCGAAGCCTGCTCCATGACTTTTCAACGACAG
TTTGAAAATGAACACTATTCTAAAGAGTGTTATTACAGGCTGAAAATGTG
TTCGTTTTGTTCGGAAGAATATATACTGGCGTATGAAGAGGTATCCAATT
TCTATTAGTCAATCTAAAATTGATTTAATGATCCTATTTGCGATGATATG
ATAATATTAaatcaaggatttattatacactggatatacaagtaacagat
ttttgccgatttctcgtgtactagctatgtccgcagtaatgatgtcattg
ttcactctccttccctcattaaatgattttcgaagcatttttattgcatt
tcttatcgaaaatcactcatccaattctcaaaagagacttaaaactttcc
tgtgagagtcagattcttccacctaattgctaattataagtcgttatgac
gtttcaagctgtgagaaagatgcaaaagaggtgttgtgtataagaaattt
aatgttgacaccggaaattttcagacttcaacctaaaaaaaaaccacctt
gccaccacgtgcctccagaGGATTTTCATatcacagtggagccaagacac
tcaagtcttatgtatgttaatttcagctcttctggggacagtcttggaaa
gatatttccaattgaaaatttcgtgtcactataagcattttgtcagaatt
tcttgtctaataatgtttttctcacattagatttcacaaatgtatccagc
tcggaatgctagccttactttcaaacatttttttctgcaaatgtacaaaa
agagagagctagaaaactttttaaaaataagactgataaacattttttta
aatcagacaacttcgagccgccatgacagttgtcctttgcggacaaagct
agaacataaattgttttctgaaacaatgaaaatacaatgatcgctctcca
tcgttttatgagtcatttatccagtgtataataaatctttgattaaatat
attttaatttcattGATTGAGGACTACTATTCCAAGGTGCCTAATTATTA
Taacattattttttattgaaccaggcatgttttttttaagaacattcaaa
atttctgACCTTCCGgaagttcttaactttttgagttttaagcttaaaaa
tcttcttaaaattttcttaatttcaccGTTTTGTTAGTGTTTTTGTGAAT
TTCCTAAGAATTCTTTTATAGTCCTTAAACTCTTAAAAATCGAAGCCTAA
TTTTCTTAATAGTTCGTTTCAAACCTTCTAGGAACACATCGAAGATTGTG
AACAATTTCCACTTTGCTGTGATTTTTGTAACGCCGTAGAAATCGCCAAA
TCTGAGGTAAGTTATTATTTAACCCTTTAAATGCCACGGTCctatttttc
taagttttttaagaaaatcaccaatcacttttgtttattttttcatgacc
atgaagcacaattcaattcctacgagttagaaaAATATACCGCAAAATAT
ACTCggcattggcacttaaagggttagaGAAATTATGATGTATAGTTTCA
ATTGAGAATGATTTAgtaaatttagaaaatgttcTTTCCAATCAATCATC
AAACATCCTCATGTGTTTCGTACAAGCCTCTGAAATGTAGATCTGGAACA
AATGATTATTGATTATATGGATGATTTAAAGCTTAAAATTCCGAAGTTAC
AGTTTTACGAATAACCAAAATATTCTATTACAGTATTTAGAgttttttat
tgcttttaatGGTAAGTTAATTTTGTGCATACTTTGCTTGTCTACCTGgg
ttttctgtaaaaaaatgaCCACTAACAGATATCGAACAAACTGTATCGGA
CTGTAGGTGCACTATACTCTTTAAGTTTTAGCACGTATGTGtagttaatt
tttattttttctactttttagtCTAGGCTACTAAAGCCTTGATATCAAAT
CGATCGAAAGTGTGcattaagggaacttattttggcggagacaaaattcg
ccaaaattaagtATTTTACTTACTCGCCAAGATAAGCTCTCGCCGAAATT
CTCTTCTGCATTTTGCCAAAATAacccctaaaaatcataaaaattgctca
aatgAGGCAAAATAGTACAGATTTAGCGTGCtactcgccaaaattagttc
tcgcaaaaaaataagaaattttaccattcggcaaaacaagttctcgccaa
aattaaagattttaaagattttcactGGTCGCCAAAGTTAGTTCTCATTT
CCTTGATGTACTTTAGAATCAATCTATCGATATTTTGTTTAGAATTCTTG
TGATAATGGCATACAGTAAcacgtttttgtttattttttactaGATGGAA
ACGCACTTATTACATGATTGTAAAAAACTACGTCATTCATGTCCATTCGC
CAATCTTGGTTGTGAGAAAAAGGTATAAAGTTCACTGACGTTAATTTTAA
GTACCCAACTGGATTttcttaaaagatttttaaatataCCTGAAATTAGT
GTAGCAATTATCTGAATTCTTTTTCAGATGTTTTTAGAAGACCTAAAAGT
ACACGAGGCAAACTCACATGACTACCATTTGCAACTAGCATCTAATAAGA
TTGCTCTACAAGATCAAGTCATCAGCGAACAAACACAAAATGTAGAAATG
CTATTGCGAAAAATCGAAAAGCTCGAAAATAAACCCTCTGTGTTAAGTGA
TGTTCATGTTTGGAGCATTCCATCTTTCACTAGAGAAATCGAAAAGGCTG
AAGAAAATTTGTATCTTTCCAAATTGATTTATACAGCCGATGGGTATAAG
ATGGAATTCCTCCTATACCCTAACGGTGATCTCGATAGAGCTGTCAGCTG
CTTTTGTAAAAGCGTTGAGGGTTCTTTCGCTGATTTATTGAAATGGccga
tgaaaaaagtgattCGAGTTTCGATCCTTGATAAGAATGACAATTTGAAA
AGTGTATGTAAACTCAAAACTGAAAATCATAATTCGTTCAAGGAGCCAGT
TCACAAACACAAACCTAGAGGCTGGAAAAGATTTATTCCACACGATCAAT
TACCCATACTCCTTCATAACGACACCTTAACTTTGAAGACAAACATTAGC
GACGCagtttaatttatttttctgttacTTATCTTTTTAGTTGATTTGTT
TTCCAATATTCAACGCATATAATAATACATTGATTGATTTTCCATTTTCC
TCGACTCTTCCTCAAGCTtgctctttatttttctttgttgctctctaaga
attctttttaatttttatcaatttcaacGTTGCAGAGAAAGTTATGTCGT
TCAAAAGTAAATGTTTATATAGAGGGTAGCACGCGAATAATGCTGTACTT
AATATCTTCTATCTGTATCTACTACGAGACAGTAAAGGGCTTGACGACTT
AAAGTCTTGAAGAGACATTTTGGTCAGCCTTTTTCACCTATCANTTGCAG
AGAAAGTTATGTCGTTCAAAAGTGAAGAGACATTTCGCTCAGCCTTTTTC
ACCTATCATTTATCATGAGATTACACAAATTGTTATTTGACAATCAAATT
TTCAATGCTCTTTTATATCTGctaaattttctgtttcatttTCAGctaaa
gctaaaacaaaaacGAAACAAACTAACATAATGAAATGTTAGCTAATGAA
ACAGGTGGATTCAATGTAGAATTTATCACGAATTGCAAACCAGAACAATC
TGTATGTTCAATATGCCCCTTACTTCTTTTTGACCCTATACAGGCTATTG
AATGTGATCATCGGTTGCTGCATCACACACCAAataaaaaggtaaaatat
tttCCCTCTAGACTTTATCAGTATTTTCCCTACATCCCAAAAAGGGGCAA
AGTATTTATTGGCTAATCAAATGATTAagattcattcattcatttctacA
GGTAGGTGGTGTTAGTATGAAATCTAGTTTAAGAAATatatgtctaaaca
cacacagGAGGACGGTCATGCTTAACTGACGTGGTTGAAAAAAGGGcgtt
taaaattttttgcttGATCTTTTTGCTTGGCTATTTTGTCGTTTTACTAT
CTGGTTCCTTGTTGATttggttttgatttgatttggttgCTAATATGAGT
CAATCAAAAACGAGGAGCTCATCAGAAATTTCTAAAATGATTGAGGAAAT
TTTGGACAGAAAGCTAGAGAAACTTGCAACCAAGAAAGATCTTGATGAAA
TCAAGAAtctttttcagaattaaaatgataaaattgaaCTGCAGGTTGCG
GCCAGTGATATTGACAGGGCACATCGTGTGGGGAAAGAAAGGAAAACAAT
GAGTTAAATTTTATTCTTTCAACAAACGCACGAGCGTATACAAAGCCAGG
AAATCAGCCAAAAATAACATTAAAGTTCATCTGGATTTGACGAATGCACG
TTTGAGATTGTTAGATGGTGCAAAAGAATTGATTACGCCAAATTCCaatg
ttgattttgtttttgcagATGTAAACTGTAACGTAGTcgcaaagctaaaa
aatgacgATTACAAATTTTTCGACACCATTGCTTCTTTCAAAGACAGAAT
TCTACAATCATAGGAGCTTTTTCTTGTCACATTATATTTTTGTCATCATC
ACACATATCGATTATTCTGACTATTTCTGcctttctaagttttttttcaa
tgccTTTTTTCTATGTTAAAAGCACTGGACGTAATTGTATCGATTGCTTC
TTTTGTGTTTTATACAtcctttttacacttttttcataaTTACACGGCAA
TTATGGAATCATTTTTTGAGTTATTACAATTTTATAtgtgttttttattt
atgaGCTATGTTTGGAAATCAACGTCAGGTAAGAGGTTTGTTGACATCAG
AATCTTGTAATGGGAGTAAGTTTGCAATATAGAGCGTGCATTGGTTTATT
TAACtctattaaatttattttagtgaGCTTTGACTTTTGTGTGGGTTTTG
ATTTAAGTCTTTTGGTTTTCCCGAATCTCTTATTCTGTCTTCCCTActtc
attttactttttaatcTTACTCTTCTTCTCCTATGGGGTGACATTGAGTC
GAATCCGGGGCCGGTGGAGAGGGATAACACCTTGTCTGTTTGTCATTGGA
ATCTAAATAGCGTTTGGGTTGATAACTTTGCGAAGATTGCTCAAATCAca
gcttttttaaatgtttataagtttgatatcttttgtATTGGTGAATCCTT
TCTCGATTCTTCTATCGAGACGGACGATCTAAGGCTAAAGATTGATAACT
ATGAACTCCTTAGATCCGACCACCCTTCGAATTCTAAAATGGGTGGAGTG
TGCCTATATCGCAGAGTTGGTATCTCTGTTGAGGAAAGACCTGATCTGTC
CTCTCTTGATGAGTGTCTTGTTCGCGAAGTTAATTCTGGtactaaaaaac
tttttctttgtctTCTCTATCGTTCCCCAAGTCAAGACTTTAAGCATAAA
TGGGAGCAGACAATTATAAATATAAGCAACATTTCTTCTGCTGGCACGAT
TCTACTTGGTGATTTCAATGGGAGGAATTCGGAATGGTGGGCTGGAGATA
CAACAAATTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNTATTGCCTTACAGCATGGTTTACATCAACTTATTGACGAGCCGAC
TCACCTTCGTCCCGACTGTTCACCTACTTGcatagatcttattttttttc
aggctCTTGTTTTTGACTCCGGGGTTTTGCCTTCACTCCATGCCCGTTGC
CACCACCAGATAACCTTTGTGAAACTTAATTTTCAGGTTAAATTCCCTCC
AGCATACAAACGAAAAATTTGGGATTTTACTAGGGCTGATGAGAGGGGAA
TCATGCTTGCTCTAAATGCCATTGAGTGNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNTCtcgcaaaaaaataagaaattttaccaTTC
GGCAAAaaaagttctcgccaaaattaaagattttcaagattttcactgGT
CGCCAAAGTTAGTTCTCATTTCCTTGATGTACTTTAGAATCAATCTATCG
ATCGatattttgtttaaaactctTGTGATAATAACATACAGTAACgcgtt
tttgtttattttttactaGATGGAAACGCACTTATTACAAGATTGTAAAA
AACTACGTCATTCATGTCCATTCGCTAATCTTGGTTGTGAGAAAAAGGTA
TAAGTTTCACTGACGTTAATTTTAAGTACCCAACTGGATTttcttaaaag
atttttaaatataCCTTAATATGAAGCGGTCGTATCAAGTAGAGTGTCCA
TTAGCATTACGCAATTTTATGGGTCGGACCCTAAGCCGGCTCATACCAAA
GAACAGGAAATGCCTCTCAGCTTGATGCTCGTCAACTACTCTAACGTCCC
AAATAAACGTCTCCACCGCTtatttatttttggaaatattttcagctata
aCAAGCTGAATTGCTCTATCTTGCTGAATCTTCTTGTTTTATCttataat
taccttattttggggttttcggAGGTAAAATTTCTTACGCCCCCTTTTTA
TTCAGACCTTCCCATttataagattttcaaaaaatttgaacccCCAAcct
actattcgggaccttagggTAAAGAGAAATGTCAATGTTTAGTTGGGAAA
TTCAGGGAAAGGAGTGGTGgtctcccctaccttcgggttgCACTCGACTG
TGAATAAACCACGGTTCtacaaaaaactgaaattaGTGTAGCAATTATCT
GAATTCTTTTTTCAGATGTTTTTAGAAGACCTAAAAGTACACGAGGCAAA
CTCACATGACTACCATTTGCAACTAGCATCTAATAAGATTGCTCTACAAG
ATCAAGTCATCAGCGAACAAACACAAAATGTAGAAATGCTATTGCGAAAA
ATCGAAAAGCTCGAAAATAAACCCTCTGTGTTAAGTGATGTTCATGTTTG
GAGCATTCCATCTTTCACTAGAGAAATCGAAAAGGCTGAAGAAAATTTGT
ATCTTTCCAAATTGATTTATACAGCCGATGGGTATAAGATGGAATTCCTC
CTATACCCTAACGGTGATCTCGATAGAGCTGTCAGCTGCTTTTGTAAAAG
CGTTGAGGGTTCTTTCGCTGATTTATTGAAATGGccgatgaaaaaagtga
ttCGAGTTTCGATCCTTGATAAGAATGACAATTTGAAAAGTGTATGTAAA
CTCAAAACTGAAAATCATAATTCGTTCAAGGAGCCAGTTCACAAACACAA
ACCTAGAGGCTGGAAAAGATTTATTCCACACGATCAATTACCCATACTCC
TTCATAACGACACCTTAACTTTGAAGATAAACATTAGCGACGCagtttaa
tttatttttctgttacTTCTTTTTAGTTGATTTGTTTTCCAATATTCAAC
GCATATAGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033263XLOC_033263Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00052637-exon-scaffold_218-1491911889:729572..729773TCONS_00052637-exon-scaffold_218-1491911889:729572..729773Clytia hemisphaericaexon
TCONS_00052637-exon-scaffold_218-1510915933:729572..729773TCONS_00052637-exon-scaffold_218-1510915933:729572..729773Clytia hemisphaericaexon
TCONS_00052637-exon-scaffold_218-1575043694:729572..729773TCONS_00052637-exon-scaffold_218-1575043694:729572..729773Clytia hemisphaericaexon
TCONS_00052637-exon-scaffold_218-1491911889:730390..730435TCONS_00052637-exon-scaffold_218-1491911889:730390..730435Clytia hemisphaericaexon
TCONS_00052637-exon-scaffold_218-1510915933:730390..730435TCONS_00052637-exon-scaffold_218-1510915933:730390..730435Clytia hemisphaericaexon
TCONS_00052637-exon-scaffold_218-1575043694:730390..730435TCONS_00052637-exon-scaffold_218-1575043694:730390..730435Clytia hemisphaericaexon
TCONS_00052637-exon-scaffold_218-1491911889:730619..730723TCONS_00052637-exon-scaffold_218-1491911889:730619..730723Clytia hemisphaericaexon
TCONS_00052637-exon-scaffold_218-1510915933:730619..730723TCONS_00052637-exon-scaffold_218-1510915933:730619..730723Clytia hemisphaericaexon
TCONS_00052637-exon-scaffold_218-1575043694:730619..730723TCONS_00052637-exon-scaffold_218-1575043694:730619..730723Clytia hemisphaericaexon
TCONS_00052637-exon-scaffold_218-1491911889:731147..731311TCONS_00052637-exon-scaffold_218-1491911889:731147..731311Clytia hemisphaericaexon
TCONS_00052637-exon-scaffold_218-1510915933:731147..731311TCONS_00052637-exon-scaffold_218-1510915933:731147..731311Clytia hemisphaericaexon
TCONS_00052637-exon-scaffold_218-1575043694:731147..731311TCONS_00052637-exon-scaffold_218-1575043694:731147..731311Clytia hemisphaericaexon
TCONS_00052637-exon-scaffold_218-1491911889:732453..732527TCONS_00052637-exon-scaffold_218-1491911889:732453..732527Clytia hemisphaericaexon
TCONS_00052637-exon-scaffold_218-1510915933:732453..732527TCONS_00052637-exon-scaffold_218-1510915933:732453..732527Clytia hemisphaericaexon
TCONS_00052637-exon-scaffold_218-1575043694:732453..732527TCONS_00052637-exon-scaffold_218-1575043694:732453..732527Clytia hemisphaericaexon
TCONS_00052637-exon-scaffold_218-1491911889:737841..737918TCONS_00052637-exon-scaffold_218-1491911889:737841..737918Clytia hemisphaericaexon
TCONS_00052637-exon-scaffold_218-1510915933:737841..737918TCONS_00052637-exon-scaffold_218-1510915933:737841..737918Clytia hemisphaericaexon
TCONS_00052637-exon-scaffold_218-1575043694:737841..737918TCONS_00052637-exon-scaffold_218-1575043694:737841..737918Clytia hemisphaericaexon
TCONS_00052637-exon-scaffold_218-1491911889:738487..739132TCONS_00052637-exon-scaffold_218-1491911889:738487..739132Clytia hemisphaericaexon
TCONS_00052637-exon-scaffold_218-1510915933:738487..739132TCONS_00052637-exon-scaffold_218-1510915933:738487..739132Clytia hemisphaericaexon
TCONS_00052637-exon-scaffold_218-1575043694:738487..739132TCONS_00052637-exon-scaffold_218-1575043694:738487..739132Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_218supercontigscaffold_218:729572..739132 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
18.2241	17.6298	12.6554	15.6343	0	0	0	0	0.656015	0.398646	3.82952e-05	0.504347	0.329187	0	0.677078	0.671378	0.685995	1.11496	0	0	0.490918	0	9.21615	6.29179	0	0	0	0.916157	3.68818	3.97648
Blast
[Close]
BLAST of TCONS_00052637 vs. Swiss-Prot (Human)
Match: TRAF6 (TNF receptor-associated factor 6 OS=Homo sapiens GN=TRAF6 PE=1 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 2.007e-38
Identity = 127/457 (27.79%), Postives = 203/457 (44.42%), Query Frame = 3 
Query:   60 GYDVELVNGELENDITCSICLFILKDPMQAIECGHRFCKTCVAGLQKGINGNYICPQDR---IETPLYPDKGKGREISNLIVKCSRNKLGCAWIKELRELDNHLAQCEFELVQCVIEACSMTFQRQFENEHYSKECYYRLKMCSFCSEEYILAYEEEHIEDCEQFPLCCDFCNAVEIAKSEMETHLLQDCKKLRHSCPFANLGCEKKMFLEDLKVHEANSHDYHLQLAS-----------------------------NKIALQDQVISEQTQNVEM-------LLRKIEKLENKPSVL-----SDVHVWSIPSFTREIEKAEEN---LYLSKLIYTAD-GYKMEFLLY---PNGDL-DRAVSCFCKSVEGSFADLLKWPMKKVIRVSILDKND-----NLKSVCKLKTENHNSFKEPVHKHKPRGWKRFIPHDQLPIL-----LHNDTLTLKINIS 1244
            GYDVE  +  LE+   C ICL  L++ +Q   CGHRFCK C+  ++   +  + CP D    +E  L+PD    REI +L+VKC     GC    ELR L++H A CEF L+ C    C   FQ+   N H  K+C  R   C  C+       +E H ++C    + C++CN + I + +M  H   DC      C F+  GC +KM    L  H   +   H+++ +                              ++  QD  I E T  +E        L R I  LE+K + +     + +++W I +F   ++  EE    +  S   YT   GYK+   L+   P        +S F  +++G +   L WP +  IR++ILD+++     N + +   K E   +F+ P     P+G+  ++    L  L     + +DTL ++  +S
Sbjct:   55 GYDVEF-DPPLESKYECPICLMALREAVQT-PCGHRFCKACI--IKSIRDAGHKCPVDNEILLENQLFPDNFAKREILSLMVKCPNE--GCLHKMELRHLEDHQAHCEFALMDC--PQCQRPFQKFHINIHILKDCPRRQVSCDNCAASMAFEDKEIHDQNCPLANVICEYCNTILI-REQMPNHYDLDCPTAPIPCTFSTFGCHEKMQRNHLARHLQENTQSHMRMLAQAVHSLSVIPDSGYISEVRNFQETIHQLEGRLVRQDHQIRELTAKMETQSMYVSELKRTIRTLEDKVAEIEAQQCNGIYIWKIGNFGMHLKCQEEEKPVVIHSPGFYTGKPGYKLCMRLHLQLPTAQRCANYISLFVHTMQGEYDSHLPWPFQGTIRLTILDQSEAPVRQNHEEIMDAKPE-LLAFQRPTIPRNPKGFG-YVTFMHLEALRQRTFIKDDTLLVRCEVS 500
The following BLAST results are available for this feature:
BLAST of TCONS_00052637 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TRAF62.007e-3827.79TNF receptor-associated factor 6 OS=Homo sapiens G... [more]
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