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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00052634 ID=TCONS_00052634|Name=TCONS_00052634|organism=Clytia hemisphaerica|type=transcript|length=2531bpRun BLAST on NCBI protein sequence of TCONS_00052634-protein >TCONS_00052634-protein ID=TCONS_00052634-protein|Name=TCONS_00052634-protein|organism=Clytia hemisphaerica|type=polypeptide|length=407bp MTKGGYDVELVNGELENDITCSICLFILKDPMQAIECGHRFCKTCVAGLQRun BLAST on NCBI transcript from alignment at scaffold_218:725091..729120+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00052634 ID=TCONS_00052634|Name=TCONS_00052634|organism=Clytia hemisphaerica|type=transcript|length=4030bp|location=Sequence derived from alignment at scaffold_218:725091..729120+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_218:725091..729120+ >TCONS_00052634 ID=TCONS_00052634|Name=TCONS_00052634|organism=Clytia hemisphaerica|type=CDS|length=8568bp|location=Sequence derived from alignment at scaffold_218:725091..729120+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00052634 vs. Swiss-Prot (Human)
Match: TRAF6 (TNF receptor-associated factor 6 OS=Homo sapiens GN=TRAF6 PE=1 SV=1) HSP 1 Score: 136.346 bits (342), Expect = 1.332e-33 Identity = 132/453 (29.14%), Postives = 200/453 (44.15%), Query Frame = 1
Query: 1291 GYDVELVNGELENDITCSICLFILKDPMQAIECGHRFCKTCVAGLQKGVNGSYVCPEDRA---ETAFYPDKGRGREILGFAVRCSNKMLGCPWVKELREVEDHKEQCDFKIVKCVVESCAEEFQRRYEDQH-YKKCKYRMVQCPFCNEDYIFAFEEEHIDDCEEFLECCDYCSDIDIPRSKMDIHLSKDCKKIPLCCPYEPLGCKEKMLFSDLEKHEVISTQHHLKLA---------------INKITNQQEQI-QL---LMDNQNQLLERLSKVEGKS--------------DAILLMKDQ-----HIWRIPRFSDEIRKAKNLGRHHTLSKFIYTSK-GY----RLECILQPYQRLFQSGTLLSCRTTVGSFDESLTWPMNKFMITSCIIDPQGIARDKTSVTTTNSR----AFKKPP-HLNPGATSF--FIPDENVEKYTFIGILTIKIQ 2487
GYDVE + LE+ C ICL L++ +Q CGHRFCK C+ ++ + + CP D E +PD REIL V+C N+ GC ELR +EDH+ C+F ++ C C FQ+ + + H K C R V C C F +E H +C C+YC+ I I R +M H DC P+ C + GC EKM + L +H +TQ H+++ I+++ N QE I QL L+ +Q+ E +K+E +S D + ++ Q +IW+I F ++ + S YT K GY RL L QR +L T G +D L WP + I I+D + +++ AF++P NP + F+ E + + TFI T+ ++
Sbjct: 55 GYDVEF-DPPLESKYECPICLMALREAVQT-PCGHRFCKACI--IKSIRDAGHKCPVDNEILLENQLFPDNFAKREILSLMVKCPNE--GCLHKMELRHLEDHQAHCEFALMDC--PQCQRPFQKFHINIHILKDCPRRQVSCDNCAASMAFEDKEIHDQNCPLANVICEYCNTILI-REQMPNHYDLDCPTAPIPCTFSTFGCHEKMQRNHLARHLQENTQSHMRMLAQAVHSLSVIPDSGYISEVRNFQETIHQLEGRLVRQDHQIRELTAKMETQSMYVSELKRTIRTLEDKVAEIEAQQCNGIYIWKIGNFGMHLKCQEEEKPVVIHSPGFYTGKPGYKLCMRLHLQLPTAQRCANYISLF-VHTMQGEYDSHLPWPF-QGTIRLTILDQSEAPVRQNHEEIMDAKPELLAFQRPTIPRNPKGFGYVTFMHLEALRQRTFIKDDTLLVR 496 The following BLAST results are available for this feature:
BLAST of TCONS_00052634 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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