TCONS_00052624 (transcript) - C. hemisphaerica

Overview
NameTCONS_00052624
Unique NameTCONS_00052624
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1378

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00052624 ID=TCONS_00052624|Name=TCONS_00052624|organism=Clytia hemisphaerica|type=transcript|length=1378bp
TCGAGTTTCTCCACGAACAATTTGATGATATGAAATGTTCAATTTGTCTT
TTGGTTTTACGAGAACCCATGCAAGCTGATGAATGTGGTCATAGATTTTG
CAAGTCTTGCGTTGTCAACATTAAAAAGAGTGGTCAGAAGAAGTACATAT
GTCCTCAAGATCGGACCAAAATGTCTCTTTTCAGGGACAAAGGCCGTGAA
CGAGAGATTCTGAACCGTCCTGTAAAATGTATTCACCACAAAGAAGGATG
TTGTTGGGCTAATGCATTGAGAGAACTGGAGaACCATACAAAAAAATGCG
ATTTCGAGAAAATGGTATGCCCTTTCAATGATTGTGGATATAAATTTCAA
AGGAGGTTCTTGGCCAAACACAACAAAGAAGATTGTTTATACAGAACGAT
GTTGTGTCCATTTTGTGACGAAAAATATTCGTTTTACCTAGAACAGgaGC
ATATCGTAGAATGCGACTATTTGCCAGTTTGTTGTGATTATTGTCAAGCT
CAAGAAATCCCAAGACACAAGATGGAGACACATCTACTTCAAGAATGTGC
TAAAGCGCCAAGAAAATGCGATTTTGTACATTTGGGCTGCAAAGAACAGA
TGCTGATGTGTAACATTGCTAAGCATAACACAAATTTTTCTGATCAACAC
ATTAATCTAGCTCTACAGAAAATTTCTGCTAAAGAAGATATTATTATGGA
AATGGGCCAAGATCTTGAAAGGGTACGGAATAATCAAGAATTTTTGCAAC
AAGAAAATGCAATGCAGGCAGAAGAGATCGACAGATTGAAAAAGGAGCTC
CATAAACAAGTCAATAAACGAccagaaatcgaaaaattagaTAAACATAT
ATGGACAATTTGGGGGTTAACAAATGAAATAGAGAAGGCCAAGAAATGGA
AAGTGGAAAATGCATCTACCAAATGTTTTTATACCTCACGAGGATACCAC
CTCAAGGTTCACTTGTATCCAAATTACCATGGCAACTCTATTGCACTGTT
TTCTCAGATTGTGTCCGGTGAATTTGATGAGAAGTTGAAGTGGCCGATGG
AAAGaacacaatttcatttttccattttaaatAAAGATAAGCAATGGACT
CCCAAATTTCTTATCGATACCAGTTATCATCGACAAGATAAAACAGGAGC
TATTCAAAAGCCCCCACACACTTATTATGAATGGAGTACTTCATCATTTT
TAAACCATGTAGACTTCCCAACCTTTCTTAGAAATGACAAGCTTACAATT
GGAATTTCTGTATCTAGTGAGAAAAAAGCGTTGTAATCATTTTTTAGGTA
AACTCTAGTCTATTTTAGTATATAGTTCTTTTATCCACAAGTTTCAGTTG
TGTTTGCAGGAAAGTGTATGTCATGGAC
Run BLAST on NCBI

transcript from alignment at scaffold_218:704577..708311+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00052624 ID=TCONS_00052624|Name=TCONS_00052624|organism=Clytia hemisphaerica|type=transcript|length=3735bp|location=Sequence derived from alignment at scaffold_218:704577..708311+ (Clytia hemisphaerica)
TCGAGTTTCTCCACGAACAATTTGATGATATGAAATGTTCAATTTGTCTT
TTGGTTTTACGAGAACCCATGCAAGCTGATGAATGTGGTCATAGATTTTG
CAAGTCTTGCGTTGTCAACATTAAAAAGAGGTATGTTTTATAGGCCAAGC
TGATGATCTTCAATTACTTTCAGTAGATTTcttagtaatttttttaaata
ataagtTGTTAAATCATTTCAAATCTCTTGATTTTCTTCTTGTGCCTGTT
TTCNTTAAAAAGAGGTATGTTTTATAGGCCAAGCTGATGATCTTCAATTA
CTTTCAGTAGATTTcttagtaatttttttaaataataagttgttaaatca
tttcaaatctcttgatttttttcttgtgcCTGTTTTCTAGATATAACATT
TATGATTATCCTATATATTATAACTTTTAGTGGTCAGAAGAAGTACATAT
GTCCTCAAGATCGGACCAAAATGTCTGTAAGTATTATTGATTGCGTTTCT
CTTGAAGGGTTATTTCTTCTGAACCATAGGGGTTGGCTGATATTCTTTCA
GATGAAAGGGGCAGCAAGGAAGAGGGGATGGCCATGAAGGATTTTtggtc
gttcgttcgttattaactttcctcgtgattggctcattagttttttctga
ttttttgcacaaagatgtataACTTTAAACCGTcgaatgtgacgaagccc
gattttcgaaaaaaaaactttgactttgtgaaaaattggatcattaactt
tttctgattttttgcatgaaagtagggtaccatcataggtaaaagatggc
tcaagcagattttttcaaaaaagtttttttggctcaaaaaactcatgttt
atctataagaatcactattaataagcatacatcaatgttcttagccaaat
tactaattttttttatgagatagatgtttcttTTGCTCACGAAattatga
aagaatatttcaagagcatgaaattttggtttctaaacgtttttttataa
gaaacaaacgactaattttagtAGATCGTCACtgtttgtgttctgaatga
ttgtttaatggtaacgctcacgtagatatcaattatacatgtgttaaatg
cataaccaggtatgtccataaaagtatcacttgttttattgTGCATCTCA
GCTTTTCAGGGACAAAGGCCGTGAACGAGAGATTCTGAACCGTCCTGTAA
AATGTATTCACCACAAAGAAGGATGTTGTTGGGCTAATGCATTGAGAGAA
CTGGAGGTAtatgaaattttatttgttttattacaTCTCAACTTCCTTTA
CGGAATGAACTTTCgtagaaagaaattttgacgaatttcaggctcaagaa
aaaagtttttaattttgatttttatttagaACCATACAAAAAAATGCGAT
TTCGAGAAAATGGTATGCCCTTTCAATGATTGTGGATATAAATTTCAAAG
GAGGTTCTTGGCCAAACACAACAAAGAAGATTGTTTATACAGAACGATGT
TGTGTCCATTTTGTGACGAAAAATATTCGTTTTACCTAGAACAGGTAATT
TCGTTTTTAAAAGTCGACTTAGTATTAGCTCTTTTTCGTATACTTTAATc
gaataaactttcgcgggaataaaatttcgcggatttgggtgtcgtCTGCG
AAAATCCAAGAAATTAAGTCctaatggaaatttggaagggcctcatccgc
gaaatatttctaaacaaatttcaaaattatgtcaaataaatactatttga
atggttacttgcaccAAAGAAGTGCAAATAatttgtatttcaacaaccag
catgcatgatttgacagtaaaagtcacaaaattgtgaaattatTGCCACT
CAATAGTGTCAGCCGCGAAAtaaagtccccgcgaaatttttgaatttcac
ggataggcccaaccgcgaaatttaatccccgcaaaagtttatcccattaa
agtacactaaataactttattttgatttttctattttcaggaGCATATCG
TAGAATGCGACTATTTGCCAGTTTGTTGTGATTATTGTCAAGCTCAAGAA
ATCCCAAGACACAAGGTTTTCAtattttcttcatctttattgttaaaaac
tttttggacctacctcggaagTCCTTTAATTTAACCCTTGTTCATTCGTT
CGCCCGTAcattcgtctgttaccagcttttctcgggatcggcccattagt
tttttcagattttttgcatagtgatgcAAAAAATTACAGTaccaaaaaat
tgatgtttaagcccgattttcgaataGATaaattttgggggaaatttggg
ccaaaaagtggcCAAAAGTGGGGTTTATGGACTTTCtgtaaaattgcttc
attagttgttttttttgcataaagacaGGTTCTTCAATAAGTGGCTTAAG
CCGTTTTTTTCGGTAAATTTTTTTGgctgtaaaaatcggattttcttatt
tggggaaattcccttttatcttttttgggataatgagcatttctcgcgat
aaatttggtattttttctgatattttgcaaaatgatgtATAATGGTAttg
tttaaaatctgatggagCCCGAGTttcgaaattaaatattttgctggtTG
GTccattcttatgttttataataATATTAATTTGCTCTTTTAGATGGAGA
CACATCTACTTCAAGAATGTGCTAAAGCGCCAAGAAAATGCGATTTTGTA
CATTTGGGCTGCAAAGAACAGGTTTTTCCTTGCCTTGATCTGAGATGTTT
CTCTTTATAAAAATGTGCCATGTATGATTATTATTGGAAACAATTAAAAA
GGAGGCTGATCTAGAAGAATCAGGACTCGCAAACATTTcggaaaaatcaa
taaataagaGATAGTATAAAGAATATCCGGGATGGAAATCTAGAGAAGTA
TATCACATTTTACTTCTCCTCATTCTAAATCTATCCttgtttttatttgt
atttaGATGCTGATGTGTAACATTGCTAAGCATAACACAAATTTTTCTGA
TCAACACATTAATCTAGCTCTACAGAAAATTTCTGCTAAAGAAGATATTA
TTATGGAAATGGGCCAAGATCTTGAAAGGGTACGGAATAATCAAGAATTT
TTGCAACAAGAAAATGCAATGCAGGCAGAAGAGATCGACAGATTGAAAAA
GGAGCTCCATAAACAAGTCAATAAACGAccagaaatcgaaaaattagaTA
AACATATATGGACAATTTGGGGGTTAACAAATGAAATAGAGAAGGCCAAG
AAATGGAAAGTGGAAAATGCATCTACCAAATGTTTTTATACCTCACGAGG
ATACCACCTCAAGGTTCACTTGTATCCAAATTACCATGGCAACTCTATTG
CACTGTTTTCTCAGATTGTGTCCGGTGAATTTGATGAGAAGTTGAAGTGG
CCGATGGAAAGaacacaatttcatttttccattttaaatAAAGATAAGCA
ATGGACTCCCAAATTTCTTATCGATACCAGTTATCATCGACAAGATAAAA
CAGGAGCTATTCAAAAGCCCCCACACACTTATTATGAATGGAGTACTTCA
TCATTTTTAAACCATGTAGACTTCCCAACCTTTCTTAGAAATGACAAGCT
TACAATTGGAATTTCTGTATCTAGTGAGAAAAAAGCGTTGTAATCATTTT
TTAGGTAAACTCTAGTCTATTTTAGTATATAGTTCTTTTATCCACAAGTT
TCAGTTGTGTTTGCAGGAAAGTGTATGTCATGGAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033261XLOC_033261Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00052624-exon-scaffold_218-1491911889:704577..704706TCONS_00052624-exon-scaffold_218-1491911889:704577..704706Clytia hemisphaericaexon
TCONS_00052624-exon-scaffold_218-1510915933:704577..704706TCONS_00052624-exon-scaffold_218-1510915933:704577..704706Clytia hemisphaericaexon
TCONS_00052624-exon-scaffold_218-1575043694:704577..704706TCONS_00052624-exon-scaffold_218-1575043694:704577..704706Clytia hemisphaericaexon
TCONS_00052624-exon-scaffold_218-1491911889:705007..705052TCONS_00052624-exon-scaffold_218-1491911889:705007..705052Clytia hemisphaericaexon
TCONS_00052624-exon-scaffold_218-1510915933:705007..705052TCONS_00052624-exon-scaffold_218-1510915933:705007..705052Clytia hemisphaericaexon
TCONS_00052624-exon-scaffold_218-1575043694:705007..705052TCONS_00052624-exon-scaffold_218-1575043694:705007..705052Clytia hemisphaericaexon
TCONS_00052624-exon-scaffold_218-1491911889:705728..705832TCONS_00052624-exon-scaffold_218-1491911889:705728..705832Clytia hemisphaericaexon
TCONS_00052624-exon-scaffold_218-1510915933:705728..705832TCONS_00052624-exon-scaffold_218-1510915933:705728..705832Clytia hemisphaericaexon
TCONS_00052624-exon-scaffold_218-1575043694:705728..705832TCONS_00052624-exon-scaffold_218-1575043694:705728..705832Clytia hemisphaericaexon
TCONS_00052624-exon-scaffold_218-1491911889:705956..706120TCONS_00052624-exon-scaffold_218-1491911889:705956..706120Clytia hemisphaericaexon
TCONS_00052624-exon-scaffold_218-1510915933:705956..706120TCONS_00052624-exon-scaffold_218-1510915933:705956..706120Clytia hemisphaericaexon
TCONS_00052624-exon-scaffold_218-1575043694:705956..706120TCONS_00052624-exon-scaffold_218-1575043694:705956..706120Clytia hemisphaericaexon
TCONS_00052624-exon-scaffold_218-1491911889:706567..706641TCONS_00052624-exon-scaffold_218-1491911889:706567..706641Clytia hemisphaericaexon
TCONS_00052624-exon-scaffold_218-1510915933:706567..706641TCONS_00052624-exon-scaffold_218-1510915933:706567..706641Clytia hemisphaericaexon
TCONS_00052624-exon-scaffold_218-1575043694:706567..706641TCONS_00052624-exon-scaffold_218-1575043694:706567..706641Clytia hemisphaericaexon
TCONS_00052624-exon-scaffold_218-1491911889:707220..707297TCONS_00052624-exon-scaffold_218-1491911889:707220..707297Clytia hemisphaericaexon
TCONS_00052624-exon-scaffold_218-1510915933:707220..707297TCONS_00052624-exon-scaffold_218-1510915933:707220..707297Clytia hemisphaericaexon
TCONS_00052624-exon-scaffold_218-1575043694:707220..707297TCONS_00052624-exon-scaffold_218-1575043694:707220..707297Clytia hemisphaericaexon
TCONS_00052624-exon-scaffold_218-1491911889:707533..708311TCONS_00052624-exon-scaffold_218-1491911889:707533..708311Clytia hemisphaericaexon
TCONS_00052624-exon-scaffold_218-1510915933:707533..708311TCONS_00052624-exon-scaffold_218-1510915933:707533..708311Clytia hemisphaericaexon
TCONS_00052624-exon-scaffold_218-1575043694:707533..708311TCONS_00052624-exon-scaffold_218-1575043694:707533..708311Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_218supercontigscaffold_218:704577..708311 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.01439	1.76806	1.6376	1.1793	0.0870165	0.0646822	0.0780363	0.255698	0.331846	0.285102	0.191057	0.222333	0.418526	0.209613	0.614971	0.822395	0.583944	0.871007	0.193569	0.101278	0.660922	0.528638	3.81202	2.93707	3.09942	3.71908	0.260389	0.272239	1.79995	2.18341
Blast
[Close]
BLAST of TCONS_00052624 vs. Swiss-Prot (Human)
Match: TRAF4 (TNF receptor-associated factor 4 OS=Homo sapiens GN=TRAF4 PE=1 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 1.028e-39
Identity = 123/470 (26.17%), Postives = 201/470 (42.77%), Query Frame = 3 
Query:    3 EFLHEQFDDMKCSICLLVLREPMQADECGHRFCKSCVVNIKKSGQKKYICPQDRTKMS---LFRDKGREREILNRPVKCIHHKEGCCWANALRELENHTKKCDFEKMVCPFNDCGYKFQRRFLAKHNKEDCLYRTMLCPFCDEKYSFYLEQEHIVECDYLPVCCDYCQAQEIPRHKMETHLLQECAKAPRKCDF-------------------VHLGCKEQMLMCNIAKHN-TNFSDQHINLALQKISAKEDIIMEMGQDLERVRNNQEFLQQENAMQAEEIDRLKKELHKQVNKRPEIEKLDKH-----IWTIWGLTNEIEKAKKWKVENASTKCFYTSR-GYHLKVHLYPNYHGNS----IALFSQIVSGEFDEKLKWPMERTQFHFSILNK-DKQWTPKFLIDTSYHRQDKTGAIQKPPHTYYEWSTSS-------FLNHVDF--PTFLRNDKLTIGISVSSEKKAL 1283
            +FL +    + C +C   +REP+Q   CGHRFC +C+      G  K  CP+D+  +    ++ D   E ++L  P++CIH +EGC W+  LR L+ H   C F  + CP N C  K  RR L  H + DC  R + C FC   +S    + H   C    V C+      + R  +  H   EC K  + C +                   + + C  Q  +  +A+ +         N AL     K+         L   R+ +E ++   AM    + R ++EL +    R E+E+L        IW I      +++AK        +  FYT + GY L+V  + N +G+     ++L+ +++ G FD  L+WP  R +  FS+L++ D        +  ++H        QKP         SS       F++H D     ++R+D + I  +V   +K L
Sbjct:    7 KFLEKPKRRLLCPLCGKPMREPVQVSTCGHRFCDTCLQEFLSEGVFK--CPEDQLPLDYAKIYPDPELEVQVLGLPIRCIHSEEGCRWSGPLRHLQGHLNTCSFNVIPCP-NRCPMKLSRRDLPAHLQHDCPKRRLKCEFCGCDFSGEAYESHEGMCPQESVYCENKCGARMMRRLLAQHATSECPKRTQPCTYCTKEFVFDTIQSHQYQCPRLPVACPNQCGVGTVAREDLPGHLKDSCNTALVLCPFKDSGCKHRCPKLAMARHVEESVKPHLAMMCALVSRQRQELQEL---RRELEELSVGSDGVLIWKIGSYGRRLQEAKAKPNLECFSPAFYTHKYGYKLQVSAFLNGNGSGEGTHLSLYIRVLPGAFDNLLEWPFAR-RVTFSLLDQSDPGLAKPQHVTETFHPDPNWKNFQKPGTWRGSLDESSLGFGYPKFISHQDIRKRNYVRDDAVFIRAAVELPRKIL 469
The following BLAST results are available for this feature:
BLAST of TCONS_00052624 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TRAF41.028e-3926.17TNF receptor-associated factor 4 OS=Homo sapiens G... [more]
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