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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00052666 ID=TCONS_00052666|Name=TCONS_00052666|organism=Clytia hemisphaerica|type=transcript|length=2273bp
TGACGCTAGCGGTTAAAAGTGTGAAACATTAATTGGCGCGCAAAATTTTT
CGTGTGCCGTGAATGACTAAAGTCAACATTGCATGTAAGAGTGAAAAGTT
TGTTCATCAAAAAGTACATACAAGAGGGTGGTTTCAAACAatggaaaata
tttgaattgatttttttaaggAGGAATGTGTATGTCTCCGACTGCGTTAg
atcaactttgaagagctcaAATTCTTTTATTGACCGTCTGCCCCATATAT
AAAAAGTATATGTTTGTTTCAAATTCGCCGAAAATTTGTTTGATTGACTG
AATCGAAGTTTCTAGGTGATGACAAAGGgtaattgaaaaaaagaaatcaa
aacaaaaaacaaagcaaacattAGAATTCATTTGTTCTCTTGTTTTTCTC
ATTGTTTATATGTGTGTACATGACTCCTCTCTTGActtcttgataatttt
ttttatttttgttatatatACTTATATACAGAGTATTAGCAAATAAGGTG
GATTTAATCTTTGACATTTCAACAGCCAATCCGCGACCTCTTCgagaaaa
cttttgtttttgacgGACGGAGAGaggatttataaaatatttttttttga
aattagatAATAGTTATGTCTTTTGGTCCTTCACCATCTATTATAATGAT
GCCTGAAAGACTTCAAGCGTTCAATATGATTTCTGGTAATTTAAGTGGTG
GTAGCGGTGGTAGCGCCGGTGGACCGCAATACCCGCCACTGCATGGTGCT
AATGTGCCACCCATCGGTGTGCCACCCTTGGTGGTTCCATCGGATGAAAA
TAATAATGGAGTTTTCAAAATGTGCGGCACAACAGCCGGTGGGTCCACAC
CAAGCATTACCAGCTCATTGCAGAATctaaagaaaatggaaaatataCAC
CAACAAAATGAAATAGACAAACAAAAGAGCAATGATGTGGACGGTTCAGA
TTGCGGAAACATTGATCACCGGATACGACGCCAACGAACACATTTCACGG
TCACACAGCTACAGAAACTGGAATCATTTTTCGCGCGCAATCGATATCCT
GATATGGCGATGAGAGAAGATATCGCTCAATGGTGTTCACTAACTGAATC
GAGAGTCAGAATTTGGTTTAAAAATCGTCGTGCAAAATGGAGAAAGAAAG
AACGTCACTTGGAACAGCGTCCCGATATGTTCCCCGATTTCAGTTCCCCT
TATCGCTTAGAACCGCCCAGTATCTACGATCGTCGCGTTCCTATGCCTTC
GTACACACCCACTTATCCAACACATACTCCGCCTTTGATTGGGGCGTCAT
CATCAAGATCTCCGCCCCTACCACACAATTATCAACAATCAAGTCACTCT
TGGTATAATTCTCCTGATCACTCGGCCAATCATAATTTGTCGGGTCCAGG
CCTCTCGCAACGACACAGTCCACCTTACAACCCGACTGGCGGACTCTATA
ATTATCAAGATCCGATTCGGAACAATTATTTATCGACTTGCCCACAACAA
ACTGTATCAACACCACAAATCGGGAATAGGGATAATGATTTAGTTTCCCC
GATTTCACTATCACCTCGCACTCCAACGCACACATTTTCACCTCAAGGAG
GTAATTTCCATATGTGAGATATAAAGATTCgggaattttcaattatttaa
acaaaaaacgaactaaatttagaattttgacaatttttgatatatttttc
agatttttttattatattaaacgtaaaaattatatattttcctgTATCAT
ATGTAAATGTAATTATACTTAAATATTTTACTTGCATGTTACGCCAAAAC
AACATACACACCTCATATATGTTTATAGTTAGAAAATGATTGGCTTCGTG
TTGTTAAGGAGGGGTTGGGTTGAAATACCAACCCTCTTAGGTATTGTCAT
CACTGTTTTTATGGAACAAATCAATCGAATGCAATTTCAAACAACATATG
CGAAGTATAAGAAGAAGTTTATTAGTATGTGTTGCCTCTTTTGACCTCTT
TTTTAACTTGACTCTTGActtgtgaaaaatatttgagaaattttaaattt
tacaaaaaaagctttcCAATTTAAACCCAAAGCAATGAACATCAGGCTAA
ATTAGATTAAGGTCTCGAaatgattttatatttttttattctaattaTAT
ATGTAAAATGACAACTGCTAATTATTTTAGTTAAACAAATATAAATTGCT
ACATTCAATTGGTTTTTTTCTCCAGTCTGCAAAATTGTCCTATTAAATTT
ACCTCACAGTTGCGGAAAGGATA Run BLAST on NCBI transcript from alignment at scaffold_218:311488..318941- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00052666 ID=TCONS_00052666|Name=TCONS_00052666|organism=Clytia hemisphaerica|type=transcript|length=7454bp|location=Sequence derived from alignment at scaffold_218:311488..318941- (Clytia hemisphaerica)
TGACGCTAGCGGTTAAAAGTGTGAAACATTAATTGGCGCGCAAAATTTTT
CGTGTGCCGTGAATGACTAAAGTCAACATTGCATGTAAGAGTGAAAAGTT
TGTTCATCAAAAAGTACATACAAGAGGGTGGTTTCAAACAATGGAAAATA
TTTGAATTGATTTTTTTAAGGAGGAATGTGTATGTCTCCGACTGCGTTAG
ATCAACTTTGAAGAGCTCAAATTCTTTTATTGACCGTCTGCCCCATATAT
AAAAAGTATATGTTTGTTTCAAATTCGCCGAAAATTTGTTTGATTGACTG
AATCGAAGTTTCTAGGTGATGACAAAGGGTAATTGAAAAAAAGAAATCAA
AACAAAAAACAAAGCAAACATTAGAATTCATTTGTTCTCTTGTTTTTCTC
ATTGTTTATATGTGTGTACATGACTCCTCTCTTGACTTCTTGATAATTTT
TTTTATTTTTGTTATATATACTTATATACAGAGTATTAGCAAATAAGGTG
GATTTAATCTTTGACATTTCAACAGCCAATCCGCGACCTCTTCGAGAAAA
CTTTTGTTTTTGACGGACGGAGAGAGGATTTATAAAATATTTTTTTTTGA
AATTAGATAATAGTTATGTCTTTTGGTCCTTCACCATCTATTATAATGAT
GCCTGAAAGACTTCAAGCGTTCAATATGATTTCTGGTAATTTAAGTGGTG
GTAGCGGTGGTAGCGCCGGTGGACCGCAATACCCGCCACTGCATGGTGCT
AATGTGCCACCCATCGGTGTGCCACCCTTGGTGGTTCCATCGGATGAAAA
TAATAATGGAGTTTTCAAAATGTGCGGCACAACAGCCGGTGGGTCCACAC
CAAGCATTACCAGCTCATTGCAGAATCTAAAGAAAATGGAAAATATACAC
CAACAAAATGAAATAGGTATTCATTCATATATTGTTAATCTTTTCGATAA
GTTAATCTTTATATTATTTTTTGTTATCCCTCACACAAGAGATTTAAGCG
TGAATTGTCTTGATTTATGGGATTTAAGGTAAGACCTTTAAGGTTAAATG
TATTAACTTGTATGCTTGTATAAATAAGATTTCTATGATGTGTGAGAGGG
AATACTTAGTCAGACTTATTGATGTTTGATTGAAGATTTTTTGGAGATTT
CTATTTCAAATTTGTTTGTGATGAGATGCATTTAAGAGATTTTGCGAAAT
ACTTCAGCACACAGGATTTAAATTTTGAATTTTTTTTGCGATGATTATAA
ATGGTGAAATTAATTCGCTTTGAAGATTTAGTTTTACGTTGACAATGGAA
TGGTTAGTTTGATGGNATAGGTATTCATTCATATATTGTTAATCTTTTCG
ATAAGTTAATCTTTATATTATTTTTTGTTATCCCTCACACAAGAGATTTA
AGCGTGAATTGTCTTGATTTATGGGATTTAAGGTAAGACCTTTAAGGTTA
AATGTATTAACTTGTATGCTTGTATAAATAAGATTTCTATGATGTGTGAG
AGGGAATACTTAGTCAGACTTATTGATGTTTGATTGAAGATTTTTTGGAG
ATTTCTATTTCAAATTTGTTTGTGATGAGATGCATTTAAGAGATTTTGCG
AAATACTTCAGCACACAGGATTTAAATTTTGAATTTTTTTTGCGATGATT
ATAAATGGTGAAATTAATTCGCTTTGAAGATTTAGTTTTACGTTGACAAT
GGAATGGTTAGTTGGATGGTAAAGTTAAAATGGATTTTTAGAGTTTTTTG
GAAGTTTTTCTTTTTGGAATTCTAAGAATAACTATTTCTCTACTTATCTA
ACAAAATAAAGGACAAATAATTGGATGACTTGAACGCCCTATTCAATTCT
TTCAGTCCATCATCTTTGCTTTGGGTTTTTTCTTGTATTTTAAGTACATC
GAAATATCATTTAATTATAAATTGCACTTTATTCTTTCAAATTCAAATTT
GGTAATAATTAAGGCTACTAGAAATTTTTCAACTTGACTTAATTTGTTCT
TTTTGACCAAAGTTTTTTGTAATTGAAGTTAAGTCATTTTAATCGAAAGA
GAATCGGGATTTTAAAGAGTGTAAACGACACTGCATACAACCATTCCACC
GAATTTTAACGGAAATATAAACTTCAATTTCCTGATTATTTTTATAATAT
GATATATTTTTGAATCCGCACACAAGTCTTTTCTGGAGTGAAACCATTTA
GCCTCATATGATTTGTGTTTCGCGATTACTTTTTCCCTGTTGTTGATACT
TAAGCATCAGTAACTTGATCACAACTTTTTACAACTTTTAAAAGTTTTTG
TGTATAGTAAATGAACTCGTCTTTTAAATTGAAATTTAATATTTTTGGAA
ATGAATACCTTTGATAGCCTTCCGGCGTCATAATGAGAATACCTGTGAGT
GGAAAAACTTGATAAATGAGATGTGTTTGGAGGCAGTTGCTTAATGAGTA
ATGATGGACAAAGATGTATTGTTTTGCAATGGAAAGCGAAAAATTACTGA
CCACCCAAATTATAGTATAAGATCTTCTTCGTTTACAATCAAAGGTTTTT
CTCGACCGTAGCCGTCAATTACCGCGTGGGCATTCTTTTGTCCCTTTTAC
CACCCTAAAACCGTCCCAGTTTTTTTTTTCGAACCTATAGACAATAGCAA
AAAGGTGTAAAAAAGGATTGGATCGAGTTTAGCCTGACCGCGCGGCTATG
GTCGAAAAGGTGTATTCATATCATCATTACCACTAAGGGTTTCATCTAAA
TCTGTTTCACTTTCTTCATACAAAGAATCACTCTCTTCGTTCGCCATCTT
TCCTCCTCCCAACTAATGTTTTGATTTTTTCTGCATACTTTGCGAAAAAG
CATTGACGCCTCTGATTGGCCGAAACTAATTAAAAGGCGGGACTGCGGGT
TTTTTATACTCTGCCCAAAACATTTTCTGAATTTGGACCCAAATCTCACA
CCATACTGATCTTTCCGAATAATTGGCCAATCGGTCTGATCGTTCAAATG
TCTAAATTGACCAATAAATTTAGCTTATGGTGGTAAATCAACTCGAAAAT
CGTTTACCGCGGCCGTCTTTGTTTTTGGTACATTTGCACCATACAAATGC
ATGATTCTGAATTTTTTTTCTCGCTGATTAAGTGTCAAAACTTGAAAATT
TCTAATTTTGCAATGGGGTTAGGTTTAGATAGATGTCTTAGGTTTTGGTT
TGTACTCCCAATGGGAAGTGAATTGTGAATACCTTTAAAAATTAAGGACG
GATTTCGTACTTTTTTCCTAAGTGGTAGTCTAAACGGGGATTAAGATGGG
AGGGTTTTTCCAGATCCTGCCCAATAATAGAGTTGTTTATGACATTTTTG
TTGAAGATTACTCCGATACGGTTAACTGTGGCCGAAGACTAGATTTGAAT
AATCTATTTAGAATTTGAAGCGTGTGGTTTTCATCCAAAGGCTGAATTGG
AAGCGTCATTTACCGAGAGATTAGTAGACTTTTGAATACTTGTTGGATTC
TTAGCCTATATTTTAAGATTGAAGGCACACAAAAAGTAAACGGTAATCGA
TTGGCGCATAATACCTCAAAACTTGTTGAAAAACTGTGATTGTACAAATA
TAGTCAATGATTATTTGCGGCAATCCTCTATTCCATTAATCCTCTTTTAG
AGGTAATATTGATCAATAAATAAACACAAATAAACACTGTTGTTTGCTCT
AAACCGTGTTTTCAATATCATTGTTGTATTTTTGTTTTAAAAGTGAAGTA
TCGTTTTCGCATGTTTGAGACGTGTATACTCTAACTTTGATGACGTCATT
TTTGTGTTTCAAAAATGATCCTTAAGTGCGTTATGGTGGGGATACACGGT
TAAAGGTCCTTGGATAATTAGTGTCACGACAATTACCGTCAAACTTTTGC
CGCGCGGTAAAATTTCGGACTTGTTTTTCCTTTGAACAGCAGACAATAAA
AAGAAAAATCTTGACCTTAATCCAGTATTCATTTCTTGGAATATTGTTTA
TGAAGTACTATTCTTATTTCTATATTGACCAATTATAGCATGACTTCCAA
GAAGGTCACCTATATACTATATACTGCCAAGCCTAAAGAAAGAGTCGGGC
ATTATAAAAATACCTTTTTTAAAAATAAGGGCAAATTGTGGAAATTATTT
TGGATGTCCATTAAGATTTGTTTTTGTCACAAACTACAATCAAGATTTTA
TCTTACATTTTAATTTCCGTTCAGTAGTTGGCGACAAGTCAAGTATTATG
ACCCTGGTGTGATAATTCTCGCAAAAAAAAAGTTTGAAAGTTATCCCATT
CAAGACCTCTGGATGGACAAAAGAAATTCCATAGTCAGAGTGTCAATAAT
AAGAGGACACAGAACAAAAGGAAATGTTACGAATTAGGCTCCTTATAAAT
TTCTGGTTTGTTGAAACTTTTTTCCATTTCAACATTAGCCATCTAATCCT
AACTTCTAAGTGTATGTTAATCCATGGTTTTTTGTCCCCTGATTTACAAT
GTTATTCATGGATGATTTTTTGTAATTTGTGTGTTAAAATTTGATAGAGT
TGTTATTAACTGATAGGATTATCCCAATTTTTGATGATTAGTCTGTCTCT
GTAAAACGTCAGGGACTTTAACGGTTGCTACAGTAGTGTGCGTGGGACGT
CTTAATTTGGTGGAACGTTTTGAGTTGCAAATTTAAAAAACCAGAATAAG
CTTAGAAGATTTAAATTGAGAATTGTTTTGTGCGCAGATGTGTGCACAAT
TTTGATTGGTTATCTTTACTTACATATTTTCTCAAACGAGATGGTTGCTT
ATTTGGGTAATTCATATATAATTTCTTTGATACGGGACTATTATTAGGAC
ATTATTTTTTAACCAAACTATCGATATTCTTATTTTGAATTTATCATGAC
AGATCAAGTCTTGCCTCAAGGAAACTGTAAAACTGAAAAAAAAATTATTC
TCCTAAAAAATATTTGCCAAATTTTAAAATTTCCTACAAATATTAAATGG
GAGTTATAGTTTTTAAGAGTATTATCTTTTCATATCATCTCAAAATTTGT
TTCCTTCAGACAAACAAAAGAGCAATGATGTGGACGGTTCAGATTGCGGA
AACATTGATCACCGGATACGACGCCAACGAACACATTTCACGGTCACACA
GCTACAGAAACTGGAATCATTTTTCGCGCGCAATCGATATCCTGATATGG
CGATGAGAGAAGATATCGCTCAATGGTGTTCACTAACTGAATCGAGAGTC
AGAGTAAGTCGATTTTATCGATGTCAAGTCTTGACAGGATAGGTTATGTA
GCTAGTTAATCAAAGTTAGATGCTTGTCCAGCGTTAAATAGAAGTTTGAT
GTTCGTCATAGACCGACGTTCATAATTCATAAAAGACCTTGAAATAGGTA
CTCATCTAACGGTATATAGGTGTTAGAATGTTATCGCACGTCACACGGAC
GGTAGATCAGATTAAAGGACACTTTCATCTCCACTAATAACCTTTACACG
TCTTTTTTTTTTTAAGAAACTAGTTTTACCAAGCAGCCTCAATGTTACTT
AAGAAATCGGCCTTTTGAGCCTTAAATGTTTCTTACATGTTTCTAACTTT
TTGACATAATTAGTCTTGATTGGAAGGTTCTTATAAAAAACCGAATTAAA
AAATGTTATTTTCTCATTCTCAGCCTCAGCATGTTTCTTAGATGTTTCTT
AGTTTTTAGGCATTCTGAGCCTCATGTTTCTTAAAAGTGTGTTTCTTAAA
AAAAAAAGACGTGTATAGCATTGAGTTGACTTTATATGCTATATTTATAG
TGCAGTTGTTCTATATTAGAAACTTTTGACAGCAAGTAAAGTCAAAATTT
GAACACCAAAATAGCTCAAACCAATATAACTGTTACTATTTGACATCTTA
AAAACCACAAAATACTTTATGAGAAAAATAAACTTTTTGACTGAGACTAA
ACTCTGTTTGCTCCTTGATTTAGTATGAGTGATACTTCAACATTTTTCCT
TCCGCTAATTTTGGTTTCATTCAACAGGTTATATAAGGTGGGATGGGAAA
GGACGAATAAAAGTAGCCGTGAGATAAAACATTGAAGGTGAAAAAGGGCA
AGTGCTTTCTCAAGACAGTCTAAACAACAGAGAAATTGCCTCAAAACACC
TAAGACCATTTTTCCATCCTTTGACTCATAATAGTTCTACCAAATGTCAA
GAACTGAAAGACTTTTTGGCGGTAGCACCATCCTTTTTGTATTGATGTGT
AATTACTATTGTCAAATCTTTTTATCATTTTCCAATCTTAGATTTGGTTT
AAAAATCGTCGTGCAAAATGGAGAAAGAAAGAACGTCACTTGGAACAGCG
TCCCGATATGTTCCCCGATTTCAGTTCCCCTTATCGCTTAGAACCGCCCA
GTATCTACGATCGTCGCGTTCCTATGCCTTCGTACACACCCACTTATCCA
ACACATACTCCGCCTTTGATTGGGGCGTCATCATCAAGATCTCCGCCCCT
ACCACACAATTATCAACAATCAAGTCACTCTTGGTATAATTCTCCTGATC
ACTCGGCCAATCATAATTTGTCGGGTCCAGGCCTCTCGCAACGACACAGT
CCACCTTACAACCCGACTGGCGGACTCTATAATTATCAAGATCCGATTCG
GAACAATTATTTATCGACTTGCCCACAACAAACTGTATCAACACCACAAA
TCGGGAATAGGGATAATGATTTAGTTTCCCCGATTTCACTATCACCTCGC
ACTCCAACGCACACATTTTCACCTCAAGGAGGTAATTTCCATATGTGAGA
TATAAAGATTCGGGAATTTTCAATTATTTAAACAAAAAACGAACTAAATT
TAGAATTTTGACAATTTTTGATATATTTTTCAGATTTTTTTATTATATTA
AACGTAAAAATTATATATTTTCCTGTATCATATGTAAATGTAATTATACT
TAAATATTTTACTTGCATGTTACGCCAAAACAACATACACACCTCATATA
TGTTTATAGTTAGAAAATGATTGGCTTCGTGTTGTTAAGGAGGGGTTGGG
TTGAAATACCAACCCTCTTAGGTATTGTCATCACTGTTTTTATGGAACAA
ATCAATCGAATGCAATTTCAAACAACATATGCGAAGTATAAGAAGAAGTT
TATTAGTATGTGTTGCCTCTTTTGACCTCTTTTTTAACTTGACTCTTGAC
TTGTGAAAAATATTTGAGAAATTTTAAATTTTACAAAAAAAGCTTTCCAA
TTTAAACCCAAAGCAATGAACATCAGGCTAAATTAGATTAAGGTCTCGAA
ATGATTTTATATTTTTTTATTCTAATTATATATGTAAAATGACAACTGCT
AATTATTTTAGTTAAACAAATATAAATTGCTACATTCAATTGGTTTTTTT
CTCCAGTCTGCAAAATTGTCCTATTAAATTTACCTCACAGTTGCGGAAAG
GATA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00052666-exon-scaffold_218-1575043694:318026..318941 | TCONS_00052666-exon-scaffold_218-1575043694:318026..318941 | Clytia hemisphaerica | exon |
| TCONS_00052666-exon-scaffold_218-1575043694:313689..313882 | TCONS_00052666-exon-scaffold_218-1575043694:313689..313882 | Clytia hemisphaerica | exon |
| TCONS_00052666-exon-scaffold_218-1575043694:311488..312650 | TCONS_00052666-exon-scaffold_218-1575043694:311488..312650 | Clytia hemisphaerica | exon |
| TCONS_00052666-exon-scaffold_218-1510915933:318026..318941 | TCONS_00052666-exon-scaffold_218-1510915933:318026..318941 | Clytia hemisphaerica | exon |
| TCONS_00052666-exon-scaffold_218-1510915933:313689..313882 | TCONS_00052666-exon-scaffold_218-1510915933:313689..313882 | Clytia hemisphaerica | exon |
| TCONS_00052666-exon-scaffold_218-1510915933:311488..312650 | TCONS_00052666-exon-scaffold_218-1510915933:311488..312650 | Clytia hemisphaerica | exon |
| TCONS_00052666-exon-scaffold_218-1491911889:318026..318941 | TCONS_00052666-exon-scaffold_218-1491911889:318026..318941 | Clytia hemisphaerica | exon |
| TCONS_00052666-exon-scaffold_218-1491911889:313689..313882 | TCONS_00052666-exon-scaffold_218-1491911889:313689..313882 | Clytia hemisphaerica | exon |
| TCONS_00052666-exon-scaffold_218-1491911889:311488..312650 | TCONS_00052666-exon-scaffold_218-1491911889:311488..312650 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_218 | supercontig | scaffold_218:311488..318941 - |
Blast
BLAST of TCONS_00052666 vs. Swiss-Prot (Human)
Match: PITX2 (Pituitary homeobox 2 OS=Homo sapiens GN=PITX2 PE=1 SV=2) HSP 1 Score: 108.997 bits (271), Expect = 1.458e-25 Identity = 53/86 (61.63%), Postives = 66/86 (76.74%), Query Frame = 1
Query: 907 NEIDK--QKSNDVDGSDCGNIDHRIRRQRTHFTVTQLQKLESFFARNRYPDMAMREDIAQWCSLTESRVRIWFKNRRAKWRKKERH 1158
NE DK Q N+ G++ + R RRQRTHFT QLQ+LE+ F RNRYPDM+ RE+IA W +LTE+RVR+WFKNRRAKWRK+ER+
Sbjct: 61 NEKDKSQQGKNEDVGAEDPSKKKRQRRQRTHFTSQQLQELEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRKRERN 146
The following BLAST results are available for this feature:
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