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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00052655 ID=TCONS_00052655|Name=TCONS_00052655|organism=Clytia hemisphaerica|type=transcript|length=856bp
TTCGAACCCGAATTTATAACCCGAAAATCCGATTTTAGTCCACAGcgatt
caaaatggcggctcGAATCAGTCAAGTTTTGAAGAGAAGTCTATTTTCAC
AATCTAAAACCATTCAAAAGTCAACCCTTTCCACTACTTTTGTGAGGAAC
GGTAGCACAGGAAACGATCCTCCTGCTCCACCAATAAAACCACCAGGCAA
AGAATTCATTGATCAAGGCTGGAAAGATGATGGGTTAGGCTTGGGAGATT
ACCCTAACTACAAAGAATGGTCATATCAAAACCGTGACCCAACTTTGCCA
TACTGGGATCAACAGGAACGTAGACATTTTGGGGAACCTCTTCATGTAAA
CCATGACGCACTGAATATATGGATGCCAGATGATATTTCAAACCATCGCT
ACACACCAAAGGAAATGGCTTTACATCTCAGCATTGCCTTAGGTCTTCTt
ggtggtttgattttttattcagAATATGTTTACGATGCTCCATCGAGGGA
CCCAGCTGCACCAAAACCATATCCTTACAATAATTTGTATCTTGAGATGG
GCGGGGACCCTGATAAAGAACCAACAGAGTATGACCTCAAAAGAAAGATT
CCACGACCACATTATGGATggtgaaattttatttcatattctTTTGAATG
AAAGCTTATTGtacatttcttattttttattaatttgaataaaaattgtt
taaaattataATTCGCTTCACTTTACTCGTCTAAGTGTTTACAATAAATC
TAGTTATTTAACTTTTTGTACCGAGTTCTCAAAAGGTCTCAAATACCAGA
CCTGTACCatggttttgaagaaattttacttCCTAATCTGGTTGGTAGAT
GTTGGG Run BLAST on NCBI protein sequence of TCONS_00052655-protein >TCONS_00052655-protein ID=TCONS_00052655-protein|Name=TCONS_00052655-protein|organism=Clytia hemisphaerica|type=polypeptide|length=207bp
FEPEFITRKSDFSPQRFKMAARISQVLKRSLFSQSKTIQKSTLSTTFVRN
GSTGNDPPAPPIKPPGKEFIDQGWKDDGLGLGDYPNYKEWSYQNRDPTLP
YWDQQERRHFGEPLHVNHDALNIWMPDDISNHRYTPKEMALHLSIALGLL
GGLIFYSEYVYDAPSRDPAAPKPYPYNNLYLEMGGDPDKEPTEYDLKRKI
PRPHYGW Run BLAST on NCBI transcript from alignment at scaffold_218:99251..100965- Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00052655 ID=TCONS_00052655|Name=TCONS_00052655|organism=Clytia hemisphaerica|type=transcript|length=1715bp|location=Sequence derived from alignment at scaffold_218:99251..100965- (Clytia hemisphaerica)
TTCGAACCCGAATTTATAACCCGAAAATCCGATTTTAGTCCACAGCGATT
CAAAATGGCGGCTCGAATCAGTCAAGTTTTGAAGAGAAGTCTATTTTCAC
AATCTAAAACCATTCAAAAGTCAACCCTTTCCACTACTTTTGTGAGGAAC
GGTAGCACAGGAAACGATCCTCCTGCTCCACCAATAAAACCACCAGGTAT
TAGACAGTATTTTTTGTTGAAATTGATTTTTTGAGCTGGTAATTTTTTTA
CAAATTTTTGAATATTTTTTCTCCCCATTCTTTTTTACCTACTGTTAAAA
AATCTGTCGTTTCGAACGGCTAAACAAATAATAATTAAGAGGGGTAGTTT
CATTTGAATGTGTTGAACATGAAAATAACAAGAATGTGTTCATCTCAACT
GGGCAAACTCAGGACACCCGGCACTCTCCGGAAACTTCCATTCCGGAGTT
TTCCAGAGCAGCTAAAAAAAACACTATTTTTCTCTCTGGAAAATCTCCCG
GTATTTCAGAACACGAAAAAAACAACACCTTTTGCTCCGGCCATTTCTGG
AGCGCCGGAGGGGTCCTGCAAATCCTCTTAGTGTAGTAGGTAGTTAGCTA
GGTAGTTAGCATAGCTGTCAACTTTCCCGTATTGGGCCGAAAACTCCCGC
TTGTCAACGTTTTCTCCCACGGTAAAAAAATTCTGCCAAATCACCCGCAT
TTTCAGGATTTTCTCCCGCATCCTGCATTTCCAAAAATTTCCTGATTTCC
TGAACAAATTTCAAATTTTGTAAAAATGGAATGGCAAAATTTCCTGACTT
TGGAAAATTGGGACGGAAAATTCCCTGATTTCCCGAAAAAAAAATTTCAA
TTTGGAAAAATTGGATCATCTGGGAAAATTTTTCCAACTTGAAGCTCTCC
CGCATTTTTATGAGGCCTGCACTCCAAATCCTGTGATCTTGATATAAGAG
TTTAAGTCTATCTGGAGTAATTTGTTATTCAATAGACTGACGTGTTCCCC
TTAACGTATTCATTTCTACTATGCCACCTCTACTGAAATTATCTTTAATT
TTCAGGCAAAGAATTCATTGATCAAGGCTGGAAAGATGATGGGTTAGGCT
TGGGAGATTACCCTAACTACAAAGAATGGTCATATCAAAACCGTGACCCA
ACTTTGCCATACTGGGATCAACAGGAACGTAGACATTTTGGGGAACCTCT
TCATGTAAACCATGACGCACTGAATATATGGATGCCAGATGATATTTCAA
ACCATCGCTACACACCAAAGGAAATGGCTTTACATCTCAGCATTGCCTTA
GGTCTTCTTGGTGGTTTGATTTTTTATTCAGAATATGTTTACGATGCTCC
ATCGAGGGACCCAGCTGCACCAAAACCATATCCTTACAATAATTTGTATC
TTGAGATGGGCGGGGACCCTGATAAAGAACCAACAGAGTATGACCTCAAA
AGAAAGATTCCACGACCACATTATGGATGGTGAAATTTTATTTCATATTC
TTTTGAATGAAAGCTTATTGTACATTTCTTATTTTTTATTAATTTGAATA
AAAATTGTTTAAAATTATAATTCGCTTCACTTTACTCGTCTAAGTGTTTA
CAATAAATCTAGTTATTTAACTTTTTGTACCGAGTTCTCAAAAGGTCTCA
AATACCAGACCTGTACCATGGTTTTGAAGAAATTTTACTTCCTAATCTGG
TTGGTAGATGTTGGG Coding sequence (CDS) from alignment at scaffold_218:99251..100965- >TCONS_00052655 ID=TCONS_00052655|Name=TCONS_00052655|organism=Clytia hemisphaerica|type=CDS|length=1248bp|location=Sequence derived from alignment at scaffold_218:99251..100965- (Clytia hemisphaerica)
GCAAAGAATTCATTGATCAAGGCTGGAAAGATGATGGGTTAGGCTTGGGA
GATTACCCTAACTACAAAGAATGGTCATATCAAAACCGTGACCCAACTTT
GCCATACTGGGATCAACAGGAACGTAGACATTTTGGGGAACCTCTTCATG
TAAACCATGACGCACTGAATATATGGATGCCAGATGATATTTCAAACCAT
CGCTACACACCAAAGGAAATGGCTTTACATCTCAGCATTGCCTTAGGTCT
TCTTGGTGGTTTGATTTTTTATTCAGAATATGTTTACGATGCTCCATCGA
GGGACCCAGCTGCACCAAAACCATATCCTTACAATAATTTGTATCTTGAG
ATGGGCGGGGACCCTGATAAAGAACCAACAGAGTATGACCTCAAAAGAAA
GATTCCACGACCACATTATGGATGGTGATTCGAACCCGAATTTATAACCC
GAAAATCCGATTTTAGTCCACAGCGATTCAAAATGGCGGCTCGAATCAGT
CAAGTTTTGAAGAGAAGTCTATTTTCACAATCTAAAACCATTCAAAAGTC
AACCCTTTCCACTACTTTTGTGAGGAACGGTAGCACAGGAAACGATCCTC
CTGCTCCACCAATAAAACCACCAGGCAAAGAATTCATTGATCAAGGCTGG
AAAGATGATGGGTTAGGCTTGGGAGATTACCCTAACTACAAAGAATGGTC
ATATCAAAACCGTGACCCAACTTTGCCATACTGGGATCAACAGGAACGTA
GACATTTTGGGGAACCTCTTCATGTAAACCATGACGCACTGAATATATGG
ATGCCAGATGATATTTCAAACCATCGCTACACACCAAAGGAAATGGCTTT
ACATCTCAGCATTGCCTTAGGTCTTCTTGGTGGTTTGATTTTTTATTCAG
AATATGTTTACGATGCTCCATCGAGGGACCCAGCTGCACCAAAACCATAT
CCTTACAATAATTTGTATCTTGAGATGGGCGGGGACCCTGATAAAGAACC
AACAGAGTATGACCTCAAAAGAAAGATTCCACGACCACATTATGGATGGT
GATTCGAACCCGAATTTATAACCCGAAAATCCGATTTTAGTCCACAGCGA
TTCAAAATGGCGGCTCGAATCAGTCAAGTTTTGAAGAGAAGTCTATTTTC
ACAATCTAAAACCATTCAAAAGTCAACCCTTTCCACTACTTTTGTGAGGA
ACGGTAGCACAGGAAACGATCCTCCTGCTCCACCAATAAAACCACCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00052655-exon-scaffold_218-1575043694:100770..100965 | TCONS_00052655-exon-scaffold_218-1575043694:100770..100965 | Clytia hemisphaerica | exon |
| TCONS_00052655-exon-scaffold_218-1575043694:99251..99910 | TCONS_00052655-exon-scaffold_218-1575043694:99251..99910 | Clytia hemisphaerica | exon |
| TCONS_00052655-exon-scaffold_218-1510915933:100770..100965 | TCONS_00052655-exon-scaffold_218-1510915933:100770..100965 | Clytia hemisphaerica | exon |
| TCONS_00052655-exon-scaffold_218-1510915933:99251..99910 | TCONS_00052655-exon-scaffold_218-1510915933:99251..99910 | Clytia hemisphaerica | exon |
| TCONS_00052655-exon-scaffold_218-1491911889:100770..100965 | TCONS_00052655-exon-scaffold_218-1491911889:100770..100965 | Clytia hemisphaerica | exon |
| TCONS_00052655-exon-scaffold_218-1491911889:99251..99910 | TCONS_00052655-exon-scaffold_218-1491911889:99251..99910 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_218 | supercontig | scaffold_218:99251..100965 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR008699 | NDUFB8 |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0008137 | NADH dehydrogenase (ubiquinone) activity |
| GO:0003954 | NADH dehydrogenase activity |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0005739 | mitochondrion |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| cellular_component |
GO:0005739 |
mitochondrion |
| molecular_function |
GO:0003954 |
NADH dehydrogenase activity |
| molecular_function |
GO:0008137 |
NADH dehydrogenase (ubiquinone) activity |
Blast
The following BLAST results are available for this feature:
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