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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00052526 ID=TCONS_00052526|Name=TCONS_00052526|organism=Clytia hemisphaerica|type=transcript|length=395bp
NTAAAAAGCTCAACGGGCCCGTGGCCTGTTCAATCTTCCAGATCCATGAC
AAATATGTCAAATCATTAACAACTCCACGTCCACCAACAGTGGCAAAGCC
AAGAGATGATGCTGCTTTCTTAGTCTTAAACAAACCACGTGCTACCTTTG
ACACCAGGGCTTTCTCCAAACGTTATCCATCTTGCATTGAGCAAGTCAAG
GCTATTCGGGAAAAAATCGACATTCGCATTTCAACTCCATCATTTTGTTT
AACAGTGGGACGCTCtctagaaattttgaaaactttggtaAAGATGTCGG
ATCTTAAAAGTCAAAAGGAAGATTAGATGCTCAACAAAAATTGCACTTGT
TTTAGTCAGTACACTATGGAGAAGCTATACGGAGCAAAGAAAAAA Run BLAST on NCBI protein sequence of TCONS_00052526-protein >TCONS_00052526-protein ID=TCONS_00052526-protein|Name=TCONS_00052526-protein|organism=Clytia hemisphaerica|type=polypeptide|length=107bp
KKLNGPVACSIFQIHDKYVKSLTTPRPPTVAKPRDDAAFLVLNKPRATFD
TRAFSKRYPSCIEQVKAIREKIDIRISTPSFCLTVGRSLEILKTLVKMSD
LKSQKED Run BLAST on NCBI transcript from alignment at scaffold_217:283185..285402+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00052526 ID=TCONS_00052526|Name=TCONS_00052526|organism=Clytia hemisphaerica|type=transcript|length=2218bp|location=Sequence derived from alignment at scaffold_217:283185..285402+ (Clytia hemisphaerica)
NTAAAAAGCTCAACGGGCCCGTGGCCTGTTCAATCTTCCAGATCCATGAC
AAATATGTCAAATCATTAACAACTCCACGTCCACCAACAGTGGCAAAGCC
AAGAGATGATGCTGCTTTCTTAGTCTTAAACAAACCACGTGCTACCTTTG
ACACCAGGGCTTTCTCCAAACGTTATCCATCTTGCATTGAGCAAGTCAAG
GCTATTCGGGAAAAAATCGACATTCGCATTTCAACTCCATCATTTTGGCA
AATCTTGtaactttctgtttttttaagGAGAAATACAAATTAAAATTCGT
GTTGATCAATAAATCTGAACTAACTTTCTTCAACATTTCCACCATAGATT
TCACATGAAGCCAAAGCGCAGActgaagaatttgaaaaatattttaatct
ttGATTTCCCTAATAGGACGGTCTAACGGCCTACTCCATTGAAACTCTTA
TAAATTCTATGGTCTTTTTCTGGTCTAACGGTCTAAAGAACTGTCTTCAA
GTTTTGCACCTGGCATTTCGAATTTCACATCACACTTTGAAATTCTTAAA
CATTTTTGAGCCGTTAATGAACATTTTTGACCTTCCTTTTCCAAATTGGA
GGTCTAACGGCCTACTCCatagaaactcttataaaatcaacggtcttctT
CTGGTCTAACGATCTATAGAACAGTCTTAAAATTACCTACCGGGGCATTT
TATTTTAAGAGGGAATTTGagcttttgatacatttttacttgttttcact
ttgattctcaaaatttagcggtctaacggtctcttctatagaaactctca
taaaatttacggtcttcttatggtctaagggtctacagtATGGTCTTCAT
TTAGAAAACATATGTTGAATTTTAAAAGCGAAACTTGGCATTTTCGGACG
ATTTATTTCAGATTTTCTCTTTCAGTTTCCATGATTttaccggtctaatg
ggctattctatagaaactctcatataaacttcggtcttcttatggtctaa
gggtctacagaatggtcttcactttattgaaatatttttaccctgaaaag
aaaaactctgacattttcggacgatatttttcagatgtttcactttagct
accatgattttataccggtctaatgggctactctatagaaactctcatat
aaacttcggtcttcttatggtctaagggtctacagaatggtcttcacttt
attgaaatacTTTTACCCTCCAAAGAAAAACTATGACATtttcggacgat
atttttcagatgtttcactttagctaccatgattttataccggtctaatg
ggctactctataNctcaaaagaaaaactctgacattttcggacgatattt
ttcagatgtttcactttagctaccatgattttataccggtctaatgggct
actcgatagaaactctcatataaactttggtcttcttatggtctaagggt
ctacagaatggtcttcattttcaaaacagaaTCAATCAGATTTGAGttag
aactttgaaaattttgatgcttttttctTTCTGTATGACTTTAGAATCTC
ACAAATTGACGGTCTGAAGGTCTCCCCATAGAAACTCCTATAAATCCACC
GGGTTACTCTACTGGTCTACATActggtcttcattttcaaagtagAATAA
ATCGAATTTGAATTAGAACTTTATGAATTTGATGCTTTTTTACCTATTCT
ATAACATTAGAATCTAAAAGATTGACGGTCTAAAGGTCTCCCCATAggaa
ctctcataaaatcaacggtcttctGTATGGTATAACGGTCTACGCTGTGG
TCttcaatttcgaaaaaaagaattcCGAAATTAAGATCCCCCCTCCGGgt
ttgtaaaaaacttttttttgactcgATATCCANNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGG
AACATAATGTTTTGTTACAGTTTAACAGTGGGACGCTCtctagaaatttt
gaaaactttggtaAAGATGTCGGATCTTAAAAGTCAAAAGGAAGATTAGA
TGCTCAACAAAAATTGCACTTGTTTTAGTCAGTACACTATGGAGAAGCTA
TACGGAGCAAAGAAAAAA Coding sequence (CDS) from alignment at scaffold_217:283185..285402+ >TCONS_00052526 ID=TCONS_00052526|Name=TCONS_00052526|organism=Clytia hemisphaerica|type=CDS|length=648bp|location=Sequence derived from alignment at scaffold_217:283185..285402+ (Clytia hemisphaerica)
AAAAAGCTCAACGGGCCCGTGGCCTGTTCAATCTTCCAGATCCATGACAA
ATATGTCAAATCATTAACAACTCCACGTCCACCAACAGTGGCAAAGCCAA
GAGATGATGCTGCTTTCTTAGTCTTAAACAAACCACGTGCTACCTTTGAC
ACCAGGGCTTTCTCCAAACGTTATCCATCTTGCATTGAGCAAGTCAAGGC
TATTCGGGAAAAAATCGACATTCGCATTTCAACTCCATCATTTTGTTTAA
CAGTGGGACGCTCtctagaaattttgaaaactttggtaAAGATGTCGGAT
CTTAAAAGTCAAAAGGAAGATTAGAAAAAGCTCAACGGGCCCGTGGCCTG
TTCAATCTTCCAGATCCATGACAAATATGTCAAATCATTAACAACTCCAC
GTCCACCAACAGTGGCAAAGCCAAGAGATGATGCTGCTTTCTTAGTCTTA
AACAAACCACGTGCTACCTTTGACACCAGGGCTTTCTCCAAACGTTATCC
ATCTTGCATTGAGCAAGTCAAGGCTATTCGGGAAAAAATCGACATTCGCA
TTTCAACTCCATCATTTTGTTTAACAGTGGGACGCTCtctagaaattttg
aaaactttggtaAAGATGTCGGATCTTAAAAGTCAAAAGGAAGATTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00052526-exon-scaffold_217-1491911889:283185..283431 | TCONS_00052526-exon-scaffold_217-1491911889:283185..283431 | Clytia hemisphaerica | exon |
| TCONS_00052526-exon-scaffold_217-1510915933:283185..283431 | TCONS_00052526-exon-scaffold_217-1510915933:283185..283431 | Clytia hemisphaerica | exon |
| TCONS_00052526-exon-scaffold_217-1575043694:283185..283431 | TCONS_00052526-exon-scaffold_217-1575043694:283185..283431 | Clytia hemisphaerica | exon |
| TCONS_00052526-exon-scaffold_217-1491911889:285255..285402 | TCONS_00052526-exon-scaffold_217-1491911889:285255..285402 | Clytia hemisphaerica | exon |
| TCONS_00052526-exon-scaffold_217-1510915933:285255..285402 | TCONS_00052526-exon-scaffold_217-1510915933:285255..285402 | Clytia hemisphaerica | exon |
| TCONS_00052526-exon-scaffold_217-1575043694:285255..285402 | TCONS_00052526-exon-scaffold_217-1575043694:285255..285402 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_217 | supercontig | scaffold_217:283185..285402 + |
Blast
The following BLAST results are available for this feature:
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