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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00052540 ID=TCONS_00052540|Name=TCONS_00052540|organism=Clytia hemisphaerica|type=transcript|length=1214bp
CAGTAAAACAATTACAAAGGCAAAGTGAAGGTCATAAGGTTAAGAAGCTA
CCTGGAGAAATCTCTAACAAAGATTGAATACGTGAAAATCATATATTTTG
GATAAAAACAGAGTTGTATACTATAAACtatttaatttaattattttgGA
AATTGGTTTATTATTATCCTGAAgcttttgatgacgtcatcaaaacaaat
tatGGTATTTGGACGAGCATCGGTCACCTGTTGTGTATTTTATTGTTTAA
TTGTGGTAAACTTATTCTCGGTGAATACAAATGCGCAACAATACAATCTA
GCCGACATTGCAAAGGATTTCGAGTTGAGCATATCAGATTCTATGGATAT
AGTATGTGATTTGCATTGCCAGAATCGAAAGAAATTAGAAGAGCGATTAC
GACTTTTGAAAGGTCAACAAATAAAAGATGATTCGACCCATCTCCTGgat
gatttgaaaaaaagaaatgcaTTGTTAAAAATACGGAACTATTTCCAATG
ATAGAAGAGTGGTGGGTTTGTATAAAGGTTGGCTTTTTTATGTATGACTG
AGTATACATGAATTATAACAATTGACTTTGAGTAGATGATCGGAACTGAT
TCTTTATGTATTAAGAATCTCTAATGTAATGATAAAACTTATACCAGCAA
ATAGAATTCAATTTTTTGGCGATATTATTGAATTCACGTGTCATATACCA
TACATATGACACACTTCGCCCTGCAGAAATAATTCTAAAATGACTATNAC
GTGTCATATATCATACATATGACACACTTCGCCCTGCAGAAATAATTCTA
AAATTACCGAAATAGAACTTTTGTAATGATGCATGAAAACATTGTATGCA
ATGATGTAATAATAAAATCAATGTAGATGCATGCATATTCTGGAGATCGA
AAATAATAACTTCAGGTAATTAAATTAAACTCGCACTATGGTAGAATACT
TTGAATCCCAGTTGATTAGTTTATTCTCTCTAATAGCACACCCTATGCAT
aggtcataattattactttcaaCATTTGTCCGAAATTcgatcccacaatc
ctttttatcttgattcgtaatgcgtgcaagttattacttttgcattgtca
ataagtgtaattgacttgcaaaagcaattaatgcaaaggatgatgggatt
GAAACTTGGATAAACAGTAATTTGATGTCTTATTTTTAGAATCACTGCGG
TATGATATTCTAAG Run BLAST on NCBI protein sequence of TCONS_00052540-protein >TCONS_00052540-protein ID=TCONS_00052540-protein|Name=TCONS_00052540-protein|organism=Clytia hemisphaerica|type=polypeptide|length=106bp
MTSSKQIMVFGRASVTCCVFYCLIVVNLFSVNTNAQQYNLADIAKDFELS
ISDSMDIVCDLHCQNRKKLEERLRLLKGQQIKDDSTHLLDDLKKRNALLK
IRNYFQ Run BLAST on NCBI transcript from alignment at scaffold_217:54079..55292 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00052540 ID=TCONS_00052540|Name=TCONS_00052540|organism=Clytia hemisphaerica|type=transcript|length=1214bp|location=Sequence derived from alignment at scaffold_217:54079..55292 (Clytia hemisphaerica)
CTTAGAATATCATACCGCAGTGATTCTAAAAATAAGACATCAAATTACTG
TTTATCCAAGTTTCaatcccatcatcctttgcattaattgcttttgcaag
tcaattacacttattgacaatgcaaaagtaataacttgcacgcattacga
atcaagataaaaaggattgtgggatcgAATTTCGGACAAATGttgaaagt
aataattatgacctATGCATAGGGTGTGCTATTAGAGAGAATAAACTAAT
CAACTGGGATTCAAAGTATTCTACCATAGTGCGAGTTTAATTTAATTACC
TGAAGTTATTATTTTCGATCTCCAGAATATGCATGCATCTACATTGATTT
TATTATTACATCATTGCATACAATGTTTTCATGCATCATTACAAAAGTTC
TATTTCGGTAATTTTAGAATTATTTCTGCAGGGCGAAGTGTGTCATATGT
ATGATATATGACACGTNATAGTCATTTTAGAATTATTTCTGCAGGGCGAA
GTGTGTCATATGTATGGTATATGACACGTGAATTCAATAATATCGCCAAA
AAATTGAATTCTATTTGCTGGTATAAGTTTTATCATTACATTAGAGATTC
TTAATACATAAAGAATCAGTTCCGATCATCTACTCAAAGTCAATTGTTAT
AATTCATGTATACTCAGTCATACATAAAAAAGCCAACCTTTATACAAACC
CACCACTCTTCTATCATTGGAAATAGTTCCGTATTTTTAACAAtgcattt
ctttttttcaaatcatcCAGGAGATGGGTCGAATCATCTTTTATTTGTTG
ACCTTTCAAAAGTCGTAATCGCTCTTCTAATTTCTTTCGATTCTGGCAAT
GCAAATCACATACTATATCCATAGAATCTGATATGCTCAACTCGAAATCC
TTTGCAATGTCGGCTAGATTGTATTGTTGCGCATTTGTATTCACCGAGAA
TAAGTTTACCACAATTAAACAATAAAATACACAACAGGTGACCGATGCTC
GTCCAAATACCataatttgttttgatgacgtcatcaaaagcTTCAGGATA
ATAATAAACCAATTTCcaaaataattaaattaaataGTTTATAGTATACA
ACTCTGTTTTTATCCAAAATATATGATTTTCACGTATTCAATCTTTGTTA
GAGATTTCTCCAGGTAGCTTCTTAACCTTATGACCTTCACTTTGCCTTTG
TAATTGTTTTACTG Coding sequence (CDS) from alignment at scaffold_217:54079..55292 >TCONS_00052540 ID=TCONS_00052540|Name=TCONS_00052540|organism=Clytia hemisphaerica|type=CDS|length=321bp|location=Sequence derived from alignment at scaffold_217:54079..55292 (Clytia hemisphaerica)
TCATTGGAAATAGTTCCGTATTTTTAACAAtgcatttctttttttcaaat
catcCAGGAGATGGGTCGAATCATCTTTTATTTGTTGACCTTTCAAAAGT
CGTAATCGCTCTTCTAATTTCTTTCGATTCTGGCAATGCAAATCACATAC
TATATCCATAGAATCTGATATGCTCAACTCGAAATCCTTTGCAATGTCGG
CTAGATTGTATTGTTGCGCATTTGTATTCACCGAGAATAAGTTTACCACA
ATTAAACAATAAAATACACAACAGGTGACCGATGCTCGTCCAAATACCat
aatttgttttgatgacgtcat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00052540-exon-scaffold_217-1491911889:54079..55292 | TCONS_00052540-exon-scaffold_217-1491911889:54079..55292 | Clytia hemisphaerica | exon |
| TCONS_00052540-exon-scaffold_217-1510915933:54079..55292 | TCONS_00052540-exon-scaffold_217-1510915933:54079..55292 | Clytia hemisphaerica | exon |
| TCONS_00052540-exon-scaffold_217-1575043694:54079..55292 | TCONS_00052540-exon-scaffold_217-1575043694:54079..55292 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_217 | supercontig | scaffold_217:54079..55292 . |
Blast
The following BLAST results are available for this feature:
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