|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00052391 ID=TCONS_00052391|Name=TCONS_00052391|organism=Clytia hemisphaerica|type=transcript|length=1226bp
CGCGAATGTTTTCGTTCGATTTCTTTTCATTCTTCACaacaaagtttgtt
tacatttgtgaGAATTTTCAATAAGCGTTTTTCATTTCGATTCCAAGTTT
CTACATTTTATTCTACTTATATTATACTACAATATTCAATGGGGAAAGTT
CAATCAAAGACTGAGCCTCTCAATACCGATAAACGAAGTTCCGTTAGTTC
CCAAAAAGACGCAGATGATGGATCGAACGGTCCTAACGAAGATGGCAAAG
AAGGTGAAGATTCTAACACCAACCGAAAAGATTTAATAATCGCCTTCAAT
GAAGATTTCACACAAATTGATGTCAACAAAGAGAAGAGAGGAGGGTCGAC
TCGTCGCATGAGTCGaatggaaaaattgaaaagtcgaaaattacCTCATG
TTATGAGAAttcaaattattgaagaagGAGATGAAGCTGAAGACAATTGT
TCGGTCCATAAATCAAGCGATCATCATATGACTCATTTGGAGAAAATCAA
ACGACGAAAAATGCCGGCTGGTAAACGTATCTTTGGAGACCATTATGTCG
AATAGAAAGtcgattatttttcaaaagtaggaTAGAGTTTTGTACTTTTC
TACTCTATTTTTTCTTCCAAGCTCAATCTAATTGATAGCTCACTAGTCCA
TTATAGATACGCGACCTTATACAGTAATCTAAAAAAGTCTCGAAGAAGAG
CTCCAGTGCTTTTAGGTGCCTAAAACTTTAATTCTTTGCCTTAATATCTT
CAGAATGACGAAAAAAGTATCTATAACATAAAATTGAGACAATtgaggga
acttattttggcgagaaccaATTTTGGTGAGCagaagaaatcttgaaaat
ttttgtattggtgagaacttattttggcgaattacAGGCTAAATCTGTCc
aattttgccttattttgagcaatttttgaTGAGTTTCAGAGGTTATTTTt
accaaaagaatttttttgacgAGTAAgtaaattatttaattttgacgaga
accgacgaattttgtcgaaactcgccaaaattagttctcgccaaaattag
ttccctggTGCTAGAAAAAGAAATCGAAAGCCTGTAAATAGTTTAATTTT
CCAATGTTtgaatatttgtttagataaaCGATAATCCACTTCAAATGATT
TGACTGTTCTTTTTCTCTCTATTCAACCCAGCCTAAAAGCTACATTAACC
AATCGATCCAAATtttttactctcgg Run BLAST on NCBI transcript from alignment at scaffold_213:1207954..1210370- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00052391 ID=TCONS_00052391|Name=TCONS_00052391|organism=Clytia hemisphaerica|type=transcript|length=2417bp|location=Sequence derived from alignment at scaffold_213:1207954..1210370- (Clytia hemisphaerica)
CGCGAATGTTTTCGTTCGATTTCTTTTCATTCTTCACAACAAAGTTTGTT
TACATTTGTGAGAATTTTCAATAAGCGTTTTTCATTTCGATTCCAAGTTT
CTACATTTTATTCTACTTATATTATACTACAATATTCAATGGGGAAAGTT
CAATCAAAGACTGAGCCTCTCAATACCGATAAACGAAGTTCCGTTAGTTC
CCAAAAAGACGCAGATGATGGATCGAACGGTCCTAACGAAGATGGCAAAG
AAGGTGAAGATTCTAACACCAACCGAAAAGATTTAATAATCGCCTTCAAT
GAAGATTTCACACAAATTGATGTCAACAAAGAGAAGAGAGGAGGGTCGAC
TCGTCGCATGAGTCGAATGGAAAAATTGAAAAGTCGAAAATTACCTCATG
TTATGAGAATTCAAATTATTGAAGAAGGAGATGAAGCTGAAGGTAATCAA
ATTCAACCATCTGCTTTGATATTTTTTTAGCGTTTGCTAGCGCCTGGGGG
GGGCACTCATATGATTTGGCCTAAGTCATGTGCAGCGCTTAAGGGTTTTT
CAGCATCCCAAAATGCACTGTAAGGATTTCTGTGAGATTGCCATTGCACT
GCAAGGGTCGAATTTTAAAAGCAGATTTTGCGCAGCACATACCGTCGTTT
CGAAATCGTTTGCCCCCCCGGACTGGCGTTGTCTGTACCCGATATCTACG
ATACGGCTAATTTCAAAATTCATTACAGTATCGTAGAGGGTCTGTGTGTA
AAAATTGTATCCGGGCCCGGTTGTCTGGGGCTACACTGTGACAATTATGA
CAAATTTGGGGTCTTGCGGTGTCCTTAGACAACCTCGGTCCATGCATAGT
CTCTTCTTATATTAATGAGGAGATTAGCCCCCCGGGGATACTAGGTTTGC
GAGATGATGGAGTGGTGCCGCCCGATTTTTGAAAATCGGAAATTTTAGGG
TCTTAAAATCGAAGAAAAAATAACGAAATTTTGTAGATTTTAGGACTCTT
ACCGAAATTTGGCCTTTTTCGGGGTAAATATTAGTAGTTTCACTTCTTTT
GTGACCCTTCTGGGGCGACTGAAATTAGAAATTGTGATTTTTGCGACCCT
TAGCGGGACTGTGAAGGTCCAAAAAAGGGACCCTTAAGGGATGCACATAT
ACGTACCCTCCACTTGGCCTAAGTACCCCCCCCCCCCAGGGATTAGCCCG
GGCTTGTGGGGAAAAAAAAAAAAAAAAAGAAACCCCCCCCCCCCCATGGA
TTAGCCCTGGACGTTGGGGAAAAAAGATAACTATAAGTCATCCCTCCTCG
TAGAAAGATAATTTTGAGTCATCGCAGCCACCGTCGCTTAAAAATCGACA
AACAAAGTCAACCCCACTAACACCACTTTTTCATGTTACTGAGAGGTAAT
AAGGTACCAGCTTCATTGAGTTTGAATATTTAACCTTTCTAAAGCAAGAA
AAAGTGAAACCTTAAATTTGCCCCGGACACACGAGTCACTTGTTTTGGAT
GGAAGTCCAGGAGTTTGGATCTAGCTCCTTCGGGACTTTGAAATCAAAGA
TATGTTCGAGTAATGACAATGTCATGTCAGCCTACCACTTACTTTTTTTT
CAAATTCTACCTCCACTTATTTAAATTTTCTAGACAATTGTTCGGTCCAT
AAATCAAGCGATCATCATATGACTCATTTGGAGAAAATCAAACGACGAAA
AATGCCGGCTGGTAAACGTATCTTTGGAGACCATTATGTCGAATAGAAAG
TCGATTATTTTTCAAAAGTAGGATAGAGTTTTGTACTTTTCTACTCTATT
TTTTCTTCCAAGCTCAATCTAATTGATAGCTCACTAGTCCATTATAGATA
CGCGACCTTATACAGTAATCTAAAAAAGTCTCGAAGAAGAGCTCCAGTGC
TTTTAGGTGCCTAAAACTTTAATTCTTTGCCTTAATATCTTCAGAATGAC
GAAAAAAGTATCTATAACATAAAATTGAGACAATTGAGGGAACTTATTTT
GGCGAGAACCAATTTTGGTGAGCAGAAGAAATCTTGAAAATTTTTGTATT
GGTGAGAACTTATTTTGGCGAATTACAGGCTAAATCTGTCCAATTTTGCC
TTATTTTGAGCAATTTTTGATGAGTTTCAGAGGTTATTTTTACCAAAAGA
ATTTTTTTGACGAGTAAGTAAATTATTTAATTTTGACGAGAACCGACGAA
TTTTGTCGAAACTCGCCAAAATTAGTTCTCGCCAAAATTAGTTCCCTGGT
GCTAGAAAAAGAAATCGAAAGCCTGTAAATAGTTTAATTTTCCAATGTTT
GAATATTTGTTTAGATAAACGATAATCCACTTCAAATGATTTGACTGTTC
TTTTTCTCTCTATTCAACCCAGCCTAAAAGCTACATTAACCAATCGATCC
AAATTTTTTACTCTCGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00052391-exon-scaffold_213-1575043694:1209929..1210370 | TCONS_00052391-exon-scaffold_213-1575043694:1209929..1210370 | Clytia hemisphaerica | exon |
| TCONS_00052391-exon-scaffold_213-1575043694:1207954..1208737 | TCONS_00052391-exon-scaffold_213-1575043694:1207954..1208737 | Clytia hemisphaerica | exon |
| TCONS_00052391-exon-scaffold_213-1510915933:1209929..1210370 | TCONS_00052391-exon-scaffold_213-1510915933:1209929..1210370 | Clytia hemisphaerica | exon |
| TCONS_00052391-exon-scaffold_213-1510915933:1207954..1208737 | TCONS_00052391-exon-scaffold_213-1510915933:1207954..1208737 | Clytia hemisphaerica | exon |
| TCONS_00052391-exon-scaffold_213-1491911889:1209929..1210370 | TCONS_00052391-exon-scaffold_213-1491911889:1209929..1210370 | Clytia hemisphaerica | exon |
| TCONS_00052391-exon-scaffold_213-1491911889:1207954..1208737 | TCONS_00052391-exon-scaffold_213-1491911889:1207954..1208737 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_213 | supercontig | scaffold_213:1207954..1210370 - |
Blast
The following BLAST results are available for this feature:
|
