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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00052382 ID=TCONS_00052382|Name=TCONS_00052382|organism=Clytia hemisphaerica|type=transcript|length=712bp
TAGTAAAAGAGCAACAACACAAttatgaagatgaagaagaagaagatgat
gaCGACGATGAAGATGGTGatctttcaaaatataatttaaGTTCCAGTGA
CGAGGATGACAAACCTCCTCCAGCACCAAGGATAATAGGGCGatCTCGTC
CTTCAGCTGATGGTAGCTCATCAAGTGACAAACGGGATAGATCACGGTCA
CCAATCTCAAGGCGCTAAGAGACAACTATACTAGGGTTGTTCTTTTGGAG
GCTTGGTACTAGTAGGTCTTTGGTTTTTTAAAACATAGTCACTGCACAGC
TCTTTTTGCTCAATAAATCTAAGCACTTCCCTTCACTTTGTCCATCTATT
TGAAAATAATCTTACTATTTTAGTTTTAAACAAAAGTCCCTTtcatacat
tttttgaaattttttgtatttattacGGTAAAGGTATTATTCAAGGTACg
tcatttcaaacaaaatcatCTTTTCTCCCAGCCAAAAATCTTGCTttcat
ttctgaaaatttttacttcccttCTCTTATAGATCCATCAATCCAAGATG
GCAAATCCTTGgcaaatttaacttttttatattCTAACTAAATGCTCAAT
GTAAATTTCTAATCATCATTCATGATTTTTCACGGCATACTCTATCAAAA
ATACAGTTTATCAGTCTCGTGTTTATATTTAAGTTCCATTCCCAGTTTCT
ATTCAATTATCA Run BLAST on NCBI transcript from alignment at scaffold_213:1021046..1024677- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00052382 ID=TCONS_00052382|Name=TCONS_00052382|organism=Clytia hemisphaerica|type=transcript|length=3632bp|location=Sequence derived from alignment at scaffold_213:1021046..1024677- (Clytia hemisphaerica)
TAGTAAAAGAGCAACAACACAATTATGAAGATGAAGAAGAAGAAGATGAT
GACGACGATGAAGATGGTGATCTTTCAAAATATAATTTAAGTTCCAGTGA
CGAGGATGAGTAAGCCGTTTTTTAAATACAGTTTCTTGAACTCTGGTGGA
AATGATACCAACTGATATGATCTGATCACACACCATTACATTGGTGCTTA
TTATGACACACAAGTTTGGGGAACGAGTAACTAAAATGATCCATGCTGAT
ACTTTTCTCTTTGTTTTTAGCAAACCTCCTCCAGCACCAAGGATAATAGG
GCGGTAAGTGGTATTATCTTGTTTTTATTCTTAAAGTTTTATTTTGCTAG
ATAGTTTGTCAATTTCATTTACCACCATAACGTTCAAAGAAAATTTCTAG
CAAATTCTCAACTCATTTTAAGTCTACTCTCAGGTGCCTAATAAACGTTT
TCAAAAGATTTCCAACCCCCACGGACCTTATTAGGGATCTTCTCAAAAAT
AAATTCGCTTAAATAATTGAATTTAAGCGAAAAATTCGCTTAAATAATCG
AAGTACTTCGATTATTTAACAATCGAAATTCGATTATTTAGTCACCTCAG
TTCGATTATTTAGTCCCCTCGGTTCGACTATTTAATCCTATTATGCGATT
AATTAATCCTTTTGATTCCAAAATATAATCGAATTTTTTCCAAAACATAG
TCGAATATTGGTTATTTTTTCTTACGTAGATCCAAAACAGCGCAAACAAT
CCTTTGTCTACTGTAGATTTGAAAGACAGAAGAAAAAATATTTTCAAAAA
GCCGTAGTCAAATCAACCAATGACTCCATAATTCTTCTTACCTTTAAGGA
TTTTTGATCTACTAAGGGGCATCATGAATTATGAAATGATAGAATAATCC
TTTTGTGAATCACATTATCGCATCATCTTAAAGTTTCTTAATGTTTGTAT
AACAATTCCACGATCTCTCCACGATAAAGTACTTCTATCTTTTTCTATAT
TTTCAATTTCCACACACTTTCCTCTGTTATCAACCTCTCAACACAGTTGA
TTCTTATGTCTTTGTTATTGTTTTTCGATTCGAAAATAGCACTCCATCGT
TCATGTTCAAATCAAAAAAGGGCAAAACAAAAAAAAAGATAAAAGGATAA
AAGGAAGAGCGCTCACAAGATCAAGAATACGTCATTACGTCATATAAAAG
CAGGAAGAAAACATTCTTTTGCTCTATTGTTCTGTTCGCAAACGTCAATC
ATGGCGTTTTGATTGGTCAATGCAACATTTTTTTCTTACAAGTTACGTTC
TGCTNTCGCAAACGTCAACCATGGCGTTTTGATTGGTCAATGCAACATTT
TTTTCTTACAAGTTACGTTCATTCTTACTATTGTTCTGTTTGCAAAAATG
GATTCGAATTTTACATCCAGGTTTTTTTTAATGGCTAGATAAGAGATCGA
ATGTTTTGTTTGGAAAAGTTTGAATTGTTAAATATTCTAAAAGATTAACT
CTTCCTTGGATTTCTTATACACAAAGAGATCCTTCACGATTTACGCTGTC
ATTATCATAGAACTTTGCACTCAAGTCAAACATTGTTTTTACCAAAAAAA
AATTGGATAATCAAAATAAAAAACTACCTAAGAAGCCATCAAATGTTGTA
AAATAAAATATAGTGATTGCTTCCCCAGTAGAAGAGAGGGAAAGCTTCCA
AAAGGGCATCCTACAGGCTTTGCTTTCTTATAAGCTCCCGATTTGTCACA
CGCTCCTGATCTGTGACGTTTCGAATGTGATGCAACATTTAGAATGCTAT
GATATTTTTCAAAGGAAGGGAGAAAGAAAAAATGAAAATCACGTGAAAGA
AAGAGAACGCACTCAGAAGGAGTGTATTTCATCACTATTTTTGGTAAAAG
TTCACGTGATAACACGAAGGAAAGCACGCAGAGGGAGCTCAATGTAAACA
AACATTTCGTAAAAGTCTGCATTCTGCCAGATTCTGCTTCATTCATTGTG
GGTCATGGTGGGCTTGGCTGAACCTCAAGATATTTGGTCTTTCTAGACTT
TTTTCTTGTTTTCCAATTTTGTATTATGATTTGAAAAGAAATGTAAGAGA
GTAAAGTATTTCGCTATTCAAAAATACTTGATAAACAAATTCAGAATCTG
TAAGTAGTAAAAGAACAATTTTCAAGATGACCCTGTCTCACCACAAACAA
TCCTTTCGTTAATATTCCTGTCTCAGTGGAATTCTCTATTATTATCTTCT
AGACAATGTAAAATTCTTTATAGCCTAATTTCGGTAAAACTTTAACCGAA
TTCCACAAGCGAATTCAATAATTACTTTTACTGAATTAGTTAAACTTTTT
GCTGAACCGATTCGGTTAAACAACCGAATTTAACCGAAAACCATTTTACC
AAAATTTGGTTCTTGTTATATTTTTGAGAGGATCCCTAAATTATAAGCGA
AAAATGATTAATTAATCGAATACAAGGATTAAATAATCGAATATAGGAGA
TTAAATAATCGAATATAGCAGATTAAATAGTCGAAACCATTCGTCTAAAC
AACAGCAGCTATTCGATTAAATAGTCAAATCATAAATCGAACTTCATAAT
CGAAAATCGATTATATTTTTGAGAAGATCTCTTAGGACCCCTACATTTAT
TAAAATTCAGAAATTTCTTATCAAGTGTTTTCATTGGACACCTAATTTCA
AAGTCGTGTCTTATCTTTGAAATGGAGATTAAGTATTTTCTGCAGGCTTT
CAATGACGTTGACCTAGAGAGCTGACAAATTAACAAGTTAAGCAATTTTA
ATAAATATAATTATACTTATAGGTGTGACAAAATATGACTTATTGTTGTG
TTACACTCAAAATATGTACATCTTCTTGCTTCCAATAATTAGGGGGTGTT
TTCGAAAAATTATCCAATTTCCAACCCCCACGCTTATACAATACTTTTGC
TATGATTTGTACTGGAATCCTGAAAACTTAGCTGGTCGAATTGAAATTTT
TAAATCAACCTTTGTGCTTCTTTGGTTTGATAGGCAGGAATTCCTTTTTA
TTTTTGTTTCAGATCTCGTCCTTCAGCTGATGGTAGCTCATCAAGTGACA
AACGGGATAGATCACGGTCACCAATCTCAAGGCGCTAAGAGACAACTATA
CTAGGGTTGTTCTTTTGGAGGCTTGGTACTAGTAGGTCTTTGGTTTTTTA
AAACATAGTCACTGCACAGCTCTTTTTGCTCAATAAATCTAAGCACTTCC
CTTCACTTTGTCCATCTATTTGAAAATAATCTTACTATTTTAGTTTTAAA
CAAAAGTCCCTTTCATACATTTTTTGAAATTTTTTGTATTTATTACGGTA
AAGGTATTATTCAAGGTACGTCATTTCAAACAAAATCATCTTTTCTCCCA
GCCAAAAATCTTGCTTTCATTTCTGAAAATTTTTACTTCCCTTCTCTTAT
AGATCCATCAATCCAAGATGGCAAATCCTTGGCAAATTTAACTTTTTTAT
ATTCTAACTAAATGCTCAATGTAAATTTCTAATCATCATTCATGATTTTT
CACGGCATACTCTATCAAAAATACAGTTTATCAGTCTCGTGTTTATATTT
AAGTTCCATTCCCAGTTTCTATTCAATTATCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00052382-exon-scaffold_213-1575043694:1024569..1024677 | TCONS_00052382-exon-scaffold_213-1575043694:1024569..1024677 | Clytia hemisphaerica | exon |
| TCONS_00052382-exon-scaffold_213-1575043694:1024375..1024407 | TCONS_00052382-exon-scaffold_213-1575043694:1024375..1024407 | Clytia hemisphaerica | exon |
| TCONS_00052382-exon-scaffold_213-1575043694:1021046..1021615 | TCONS_00052382-exon-scaffold_213-1575043694:1021046..1021615 | Clytia hemisphaerica | exon |
| TCONS_00052382-exon-scaffold_213-1510915933:1024569..1024677 | TCONS_00052382-exon-scaffold_213-1510915933:1024569..1024677 | Clytia hemisphaerica | exon |
| TCONS_00052382-exon-scaffold_213-1510915933:1024375..1024407 | TCONS_00052382-exon-scaffold_213-1510915933:1024375..1024407 | Clytia hemisphaerica | exon |
| TCONS_00052382-exon-scaffold_213-1510915933:1021046..1021615 | TCONS_00052382-exon-scaffold_213-1510915933:1021046..1021615 | Clytia hemisphaerica | exon |
| TCONS_00052382-exon-scaffold_213-1491911889:1024569..1024677 | TCONS_00052382-exon-scaffold_213-1491911889:1024569..1024677 | Clytia hemisphaerica | exon |
| TCONS_00052382-exon-scaffold_213-1491911889:1024375..1024407 | TCONS_00052382-exon-scaffold_213-1491911889:1024375..1024407 | Clytia hemisphaerica | exon |
| TCONS_00052382-exon-scaffold_213-1491911889:1021046..1021615 | TCONS_00052382-exon-scaffold_213-1491911889:1021046..1021615 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_213 | supercontig | scaffold_213:1021046..1024677 - |
Blast
The following BLAST results are available for this feature:
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