TCONS_00052381 (transcript) - C. hemisphaerica

Overview
NameTCONS_00052381
Unique NameTCONS_00052381
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length947

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00052381 ID=TCONS_00052381|Name=TCONS_00052381|organism=Clytia hemisphaerica|type=transcript|length=947bp
TTAGATTTTCTTTTCCATGCCAGATTAAAGCTAATTAAAGCCAAAATATA
GAAATCTTATTCCATTGAAAATGTATGTATCCCTTGGGATTGGTAATTGT
TTCAATAAATACTGGTACTAAGGAGAGAAAGCCATCATGTCTTCAAGAAT
CCAAACTTTCTGCAAGATTTTACCATCAACTCAGCAACCAAAGCATTCAA
ACTCTGGTAGTTCTGTTCACCATCAAACTTTGAGGGTTCACCAAAATAGG
CTTTATCTGGCAAAGGAGGATCATTCTGGAGACGAGGGTCAATGGAATTG
GAATTTCACACAAATATATTCCGCAGAAGCAAAAAACTCTAATGATCTTT
ACTCATCAACATGTGGTAATCTATCTCATTATTTCTTAAATGGATTCAAT
ACATCTTTATTGCTTATTGGCAACCCTGAAGTCTTACTGAAAGTGGCAGT
TGATGGAAAGGGACCGCTTCACTTTTTGACAGAGAGCCTATCAAGTCTTG
CTtctaaacaattcaaaaatcTCAAGCAAATGTCTAGtcaggtatgtttt
ttttcacaattttaaaACCATTAGATCAGAGCACTGATCTCTGaccatat
atattttttttggtttctCTTTTGTACTTTTAGACAGCTAATCCACATTT
GAtgtcaaaattcaagttagtcTTTTCCTCTTCCCAATGCAAAAGTTGCT
AACATTTTTTTAGTTtgctcaaaatttcaatttaaaactTGTGTGCACTT
GCACAGATATCAAAAAGCCTCCTTTACaactaaacaaaattttcatattg
GTATTTGTAAAGCTAATAAatcttatcagagtttttgatttctctaaaaa
agcaatgcattgtgggattgtttcgggaagtattacaatagaaatctctt
aggaattcatcgagggaattctattgtaatactctcgaaacaatccc
Run BLAST on NCBI

protein sequence of TCONS_00052381-protein

>TCONS_00052381-protein ID=TCONS_00052381-protein|Name=TCONS_00052381-protein|organism=Clytia hemisphaerica|type=polypeptide|length=142bp
MSSRIQTFCKILPSTQQPKHSNSGSSVHHQTLRVHQNRLYLAKEDHSGDE
GQWNWNFTQIYSAEAKNSNDLYSSTCGNLSHYFLNGFNTSLLLIGNPEVL
LKVAVDGKGPLHFLTESLSSLASKQFKNLKQMSSQVCFFSQF
Run BLAST on NCBI

transcript from alignment at scaffold_213:1017324..1020505-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00052381 ID=TCONS_00052381|Name=TCONS_00052381|organism=Clytia hemisphaerica|type=transcript|length=3182bp|location=Sequence derived from alignment at scaffold_213:1017324..1020505- (Clytia hemisphaerica)
TTAGATTTTCTTTTCCATGCCAGATTAAAGCTAATTAAAGCCAAAATATA
GAAATCTTATTCCATTGAAAATGTATGTATCCCTTGGGATTGGTAATTGT
TTCAATAAATACTGGTACTAAGGAGAGAAAGCCATCATGTCTTCAAGAAT
CCAAACTTTCTGCAAGATTTTACCATCAACTCAGCAACCAAAGCATTCAA
ACTCTGGTAGTTCTGTTCACCATCAAACTTTGAGGGTTCACCAAAATAGG
TAAGGCATTCAGGCCTTTTTTCATGTCTTTTAAGCATTCAGTTATGGGAT
TTTGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNATTTGTGTTCTGATTGATTGTTTAATGGTC
ACGTCACGTAGATATCAATTATAAACGTGTTAAATGCATAATCCAGGTAG
GTCCATCAAAGTATCACTTGTTCCTCTTGAAATCACAAAAATTATGGTAA
AAACAGCCTTTTTCTGAAAACAACACTCTTAAAAAAAAGTGCCTGTTTTT
GGTTGCAATCAGATGCTGTCCTGCCCTCATAGAATATTGCCTGGTATTCT
TTTGATTCAGTGAGAATCAACAAGATCTTTANCTCAAAAAACGCATGTTT
ATCTATAAGAATCACTATTAATAAGCATACATCAATGTTCTTAGTCAAAT
TACTCAAATTTTTTATGAGATAGAATGATGTTTTTTCTGCTCATGAGGGC
TTACTTTTGAAGAATATGTGTGTTTAGACAGGAAATCTAGGTTGCTTGGC
GTGTTTTCATAGAAAAACTGGCCAANGCGGTTTGCAAAATAATTTTAGGT
TAACTTGAGTGCTGCCTAATGTTTTTGACTTCAGCTTTACTCAAAAATTG
AGTAGCCAAGAATTATTCTAAAATCTAAGACCTTGATGTTGAACCAGCTC
TGAATCTAAATTACAATAGGTTACCAAAGTAAGTAGCACTTAATTAAAAA
AACTATCAATAATTATTTCATCATGAAGAAGGTTACTTTCTTTTAAATAG
GATTCACTGTATTGGGAAAATAGATAAATATTATGCCTCTACCTCTACAT
ATTTATACATGCTCTCTCTTTTTTTCATGGTTAGGCTTTATCTGGCAAAG
GAGGATCATTCTGGAGACGAGGGTCAATGGAATTGGAATTTCACACAAAT
ATATTCCGCAGAAGCAAAAAACTCTAATGATCTTTACTCATCAACATGTG
GTAATCTATCTCATTATTTCTTAAATGGATTCAATACATCTTTATTGCTT
ATTGGCAACCCTGAAGTCTTACTGAAAGTGGCAGTTGATGGAAAGGGACC
GCTTCACTTTTTGACAGAGAGCCTATCAAGTCTTGCTTCTAAACAATTCA
AAAATCTCAAGCAAATGTCTAGTCAGGTATGTTTTTTTTCACAATTTTAA
AACCATTAGATCAGAGCACTGATCTCTGACCATATATATTTTTTTTGGTT
TCTCTTTTGTACTTTTAGACAGCTAATCCACATTTGATGTCAAAATTCAA
GTTAGTCTTTTCCTCTTCCCAATGCAAAAGTTGCTAACATTTTTTTAGTT
TGCTCAAAATTTCAATTTAAAACTTGTGTGCACTTGCACAGATATCAAAA
AGCCTCCTTTACAACTAAACAAAATTTTCATATTGGTATTTGTAAAGCTA
ATAAATCTTATCAGAGTTTTTGATTTCTCTAAAAAAGCAATGCATTGTGG
GATTGTTTCGGGAAGTATTACAATAGAAATCTCTTAGGAATTCATCGAGG
GAATTCTATTGTAATACTCTCGAAACAATCCC

Coding sequence (CDS) from alignment at scaffold_213:1017324..1020505-

>TCONS_00052381 ID=TCONS_00052381|Name=TCONS_00052381|organism=Clytia hemisphaerica|type=CDS|length=858bp|location=Sequence derived from alignment at scaffold_213:1017324..1020505- (Clytia hemisphaerica)
GCTTTATCTGGCAAAGGAGGATCATTCTGGAGACGAGGGTCAATGGAATT
GGAATTTCACACAAATATATTCCGCAGAAGCAAAAAACTCTAATGATCTT
TACTCATCAACATGTGGTAATCTATCTCATTATTTCTTAAATGGATTCAA
TACATCTTTATTGCTTATTGGCAACCCTGAAGTCTTACTGAAAGTGGCAG
TTGATGGAAAGGGACCGCTTCACTTTTTGACAGAGAGCCTATCAAGTCTT
GCTTCTAAACAATTCAAAAATCTCAAGCAAATGTCTAGTCAGGTATGTTT
TTTTTCACAATTTTAAATGTCTTCAAGAATCCAAACTTTCTGCAAGATTT
TACCATCAACTCAGCAACCAAAGCATTCAAACTCTGGTAGTTCTGTTCAC
CATCAAACTTTGAGGGTTCACCAAAATAGGCTTTATCTGGCAAAGGAGGA
TCATTCTGGAGACGAGGGTCAATGGAATTGGAATTTCACACAAATATATT
CCGCAGAAGCAAAAAACTCTAATGATCTTTACTCATCAACATGTGGTAAT
CTATCTCATTATTTCTTAAATGGATTCAATACATCTTTATTGCTTATTGG
CAACCCTGAAGTCTTACTGAAAGTGGCAGTTGATGGAAAGGGACCGCTTC
ACTTTTTGACAGAGAGCCTATCAAGTCTTGCTTCTAAACAATTCAAAAAT
CTCAAGCAAATGTCTAGTCAGGTATGTTTTTTTTCACAATTTTAAATGTC
TTCAAGAATCCAAACTTTCTGCAAGATTTTACCATCAACTCAGCAACCAA
AGCATTCAAACTCTGGTAGTTCTGTTCACCATCAAACTTTGAGGGTTCAC
CAAAATAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033114XLOC_033114Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00052381-proteinTCONS_00052381-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00052381-exon-scaffold_213-1575043694:1020257..1020505TCONS_00052381-exon-scaffold_213-1575043694:1020257..1020505Clytia hemisphaericaexon
TCONS_00052381-exon-scaffold_213-1575043694:1017324..1018021TCONS_00052381-exon-scaffold_213-1575043694:1017324..1018021Clytia hemisphaericaexon
TCONS_00052381-exon-scaffold_213-1510915933:1020257..1020505TCONS_00052381-exon-scaffold_213-1510915933:1020257..1020505Clytia hemisphaericaexon
TCONS_00052381-exon-scaffold_213-1510915933:1017324..1018021TCONS_00052381-exon-scaffold_213-1510915933:1017324..1018021Clytia hemisphaericaexon
TCONS_00052381-exon-scaffold_213-1491911889:1020257..1020505TCONS_00052381-exon-scaffold_213-1491911889:1020257..1020505Clytia hemisphaericaexon
TCONS_00052381-exon-scaffold_213-1491911889:1017324..1018021TCONS_00052381-exon-scaffold_213-1491911889:1017324..1018021Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_213supercontigscaffold_213:1017324..1020505 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.23254	3.29049	5.13051	5.05091	63.1433	47.6427	27.2561	25.8061	11.4799	15.2169	11.3481	12.144	3.45647	3.98925	4.66784	6.09748	6.82065	8.22673	3.63578	4.81276	5.08631	6.08223	7.51513	6.68878	10.5292	8.70609	4.63384	5.14989	6.20696	6.6653
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001752Kinesin_motor_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005524ATP binding
GO:0003777microtubule motor activity
GO:0008017microtubule binding
Vocabulary: Biological Process
TermDefinition
GO:0007018microtubule-based movement
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007018 microtubule-based movement
molecular_function GO:0005524 ATP binding
molecular_function GO:0008017 microtubule binding
molecular_function GO:0003777 microtubule motor activity
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00052381 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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