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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00051986 ID=TCONS_00051986|Name=TCONS_00051986|organism=Clytia hemisphaerica|type=transcript|length=4725bp
ATAAATTATCAATACAATTGAACAATTAAATGTAAACAATGATTTTAAAT
GTTTGAGTTTGATTATCAAATGCTCGAAttcgaatgttcgaatgttcgaa
tttgaatgtttgaatgtttacattgactcgGTAAACCTTCATTTTACTTT
AGTGGGATCTGGTAGGATTTCAATAcattccaagaagtttggaagaatga
tcttgggcaaacttggcttgatcaatttataatagaataactttacattt
ctattttagcagataatttctgaGCCTATTTGTTTCCATACTGTTATATT
ACTGAATTAATGCTAAATAGTCACAAtagatctttatttttcagctgttt
CAGTCTGATTAGCTTTATATCTGTTTTAGATATCAAAGGTTTGAAAAGTT
TCCTTGTTTCTTTCagtgaaaaaaatatgaattaaaaaGATCAGTGTTCC
TTTTGTAGCAAAGACTTTTCAGAGCTTAACAAACACAATAAGGAGAAGCA
TATTGAAGCTTGTAGAAAGAAGAATGGCAAGAGGAAATCTACATCGACGA
TAACAGCATactatcagaaaaaaacaaatactTCTCAGACCTCCTCCTCT
GAATCAAACTTAACAGAATCACTATCAGTAAGAGAAGAAAACAATTCAGA
CAGGAACAGGCTTGACAATGATGTAGAAATTGTAGAAGAAGTACAGGTTC
GAAAAACATGAGAATTGGTGTTGAACTGAAATACTGTTCTGGATTTTCCC
CAAATCCCCCGATTAACATACTTCAAGACTTTCCCTACCAAATACTGGAC
AGTCAGCCTTTtgtgatttcaaaacaaaaatttcataccAAACAATGTAG
TCTGAAAGACTTTGTGATGGACATCAATGTTGATGGAGAAATAAACAAAG
ACTGTTCTCTGTTAGGAAAAGACTCATCTCTAAAAAGAATCCTAGCACGT
TCTCAAAACGATGATCCTTCAACCCATATTCCAAATGAATGTTTGACATT
CAATCAATTGAAAAACAAGTTCGAGAAAAATCAGAAGTAAGACTCTCTCC
TTTCTATTGAGAATTACAAACTTAACAACAAGGTGGAGCAACTTGGTAAA
ACGCTTTCTTTTTACAAACGCTTTGTTATCTATATTGCTGAAAATAAAGT
TCCACGACTGCACTTTCTTGTCAATGTTGCCCTAAATAACAATCAGAGTA
TCCAATATATTCTTGGCAAGTGCACAGATGCTGTGGCAGGTGTTTATAAA
GCCAGGATGATAAAGACCTGGCGTTTTTGGTTTTAAAGTTTGGAGGCCCA
TTACTACTGGATATTTTGTACAGGGCAAATGTCCTCCCAAGTACATCCCT
TGCTAACAGAATGAGTAAAAAAGgagCACATTTGAAATTATTCCGGGATA
TGTCATACAAAGattctttcaatgaaaatttcaacATGAAGTTTGAAGGA
GATGAAAGTTCAAAATTTGGTTTGTCTATCAAATCAGATGAGACATTTAT
CAATCCTCGGTTTCGATACGATTCAAAAGCCAATAAGATTGTTGGTACCT
GCTACGAACACCATGGCAATGTAAGCCTAGATTTTAACACAATGGAAGAT
GCTGAAATCCTACAAGAAAAACTTTCAGCAGGGGGGATCCATATTCCCAA
AGAATGTCTGGTTACTGGTAAGTGAAGTTTGTAGCTATATGATATTTAGG
TCATTTCCACTGTCAGTCACTGCTTCATTCCCTGCAATTTTGAGGCTGAT
CCAACAATACATAACTGACTTAATTTTCTGATGACATAGACGAATTGGAA
CAGTCAACAACATCAGCCAGagcatcaaaaacaaaatagatgCAAACCCT
TTGAATTTTAACACTGACGGTGATTCAACTCGAAGACAGGCCATGCACGC
TATCACTCAAAATGAACTGGATTCTAACTCAGATCTTGGGAAGAAAATCC
TGCCCTTCCAttgattgaaacaaatattggtAACAACCTCGAAACAGTTA
AATACGATGCCAAGCATTTGTCCAAAAGATGCTGGACTTCATTAATAAGT
GGCAAGCTAGAGGTTGCTAATATTCAAGTAACTAAACAGGACGTGGGAGA
CATAATGAAGCTTGCAGATATTCGTACACATGAAGTGGAATCACTTGTTT
ATCCAAGGGGATAAACAGAATGTGCCTTTAGCTTCATTGAAGTAATCAAA
GACGCCAAAAAGGGAGCAGATACCTTTCAAATTGactttgataaaaaatg
ttcttgTCTTGGTTGCCGCAGTTTATGAAGCTATCATTTGTTTGTATTCA
TATTCATATGCAGAGCATTCACTCACAAATCAGGTTTGGTAGTCGTATCA
TCCATTTTCTCAGTAGGGGgtagcaaattttcaaaagcatgtttattctt
tccttgtttgattttgatatttgcatttttcattttgaaaggCGGACCTC
ATTAATGATTTTCATATAGTTGTTTCTTTCAGGAAGGCAGGGTAGGGACG
TCCAAAATTTGTGTATGAGCAGGTCCAATTCATTGCAACAGGAGCTTCCT
CCCTTCTCGCTCTGAATAGGGAAGATGCATTTAAGATCCCAAACCAACTC
TACCACGATCTTCAAAGCACATTTATAGATACTATTTTTTGTATTGCTAA
ACTACAAATTCATGCACCGACGCAATCTTTCTACACAGTATTAAATGGAA
CAGATCCTGCGGAGAGATTTTTCGGTAACTGTCGAATGTCATTCGGCCAC
AAAAACTTGGATGCATTCGAGCTCATAAACTTAACTTCTTCAATATCATT
ATGCGACGAGATTTTATCAAATCATCCCAAATGGGTTCATAAAGGTCGAT
TGTCTCGCCGGCTTGTATTGGACCACTCAAGTTGCAAAGACTGGTCTGGC
AATCTTGTCGTTTCTAGTGTCAATCTGACAACATCATAGAAGTTTGGACT
TCTACAAGGTCAAGCTTTAGCAGTCAAAGCTGAATTTGAATTCAATCCTG
TTGATCTTAGTCTTGAAGGTGTCACTCTAAAGCGCCCTTTCTTTAGAGTT
ATTGGTGTCAGTGAAAGGGAGGAAGACTGGTCAGTGATGGAAGAAGAAGT
ATCAACATCAGATTGCGAGTTAGTTCAAGAGAATGAGGAAGTAGACGGAG
TAGAGCTTTTTGATGTCATTGACAGTGACAGAAATGTTTTGTCATATTTT
GAAGTTGGTGGAAAGAATGTCTATAAAGCAACAGTCcttaaacaaatttc
aaaagaaaagccCCTATCTGCAGATCGATTGAGAAAGGTGAGAGGATTGA
GCAAGTTTACCAGTGATTCTCAGGAAAAGGTTAGTCTGAATGACACAATA
TCTGTAGGGGATCCTATCATTGCCGAGGTGGaaaaaagcaaatgaaaatt
tctgttGTTGTTGGTATCAAAGATGGAGATCATGCTAAAACTTTGATTTC
GTGTAAGGACCTGGATAACATTTCTGTTCAAGTACAGGTTAGAGAATTAG
AGATTACAGAGGTTGATGGAAGACTTTATTCTACCGGAAAGTGTGTTTCA
GATCCATTATTGGTTAAAGGAAAAATTGCATGACCATCAAACCATAGATC
TTATTGAATCCCCCCCAAAGGCTGCTCCATTTACAATTTTGATAAACAAC
TAATCCAAGACATTAGTGTCCATTTGACTTTAAGCCCAAACCAACCAGAA
AACGCTCCATCATCTTCTGCTTCTGCTGAAGTCGACGCCACATCAAAGAA
AGTTAAGTGCAAGATTTGCACAAAAATCGTAGAGCATAAAGAAATGAGAA
TTCATATCGGAAAACATATCATTCATAAGGAAATAATAATAACACAATCA
TTATGTGGGTTTTGTGGGAAAGAAGGGTCCAAGCCTCACTTGGTATCATC
TTCAAAGAGTGGTAACAATGTATATCACAGTCCTCAATNGAAAGAAGGGT
GCAAGCCTTCCTTGGTATCATCTTCAAAGAGTGGTAACAATGTATATTAC
AGTCCTCAATCTAATTGTCTTTACTTTTACAAGTATAAAAGAGTTGGCAA
TAAGTCTACCAAAACAACTCCATGTACAAATCGTATCATCACTTGCCCCT
CGTGCAACATGTACACTTGGTCGTACAACTTAAAACTCCACATGACAGAA
AACCACCCTAATGAGGATCAGATTGAAGTTATCTCAGATAAAGagaaaga
tattttgaaaaagcgCAAGTGTTAAATTGTTCTAAGAAACTTTGAGATAA
GTtgagatttgtttttatttctatttttatctaaATTCactgttttaaaa
attacttCTAAACTTGCAGTACATTGAGTTTGATtgaatttgtttatatt
ttttatgatttgattGAAGAAACCTAGAAAAACGAGACAAGTTTCTTCTT
CTTAAGCCTATTTGAAAGTTCCCTAAATTCCTCTAATTTTAGTCTGTGAG
GGCAAAGTTTTGCATGCACTAAATCAAGTTGATCATTTTGTAATTTATTA
TGCGGtttttgattattatttttCCAATCAGTTACAATACATGTATACTT
CATTATAAGTTTTCTCAGGTTTTTGTCATTGAGAAGAAATCCCTATGGCA
AAACAGGAAGGTTTTATTTGTAAGCCACAACTTGATAAAGAGTCTGTGAG
AGTTGATAACATATTAAATCTAGACACCTTTTCTTCAGGGTATCAAAGAA
AATCAAGTGTTTGCTTAGGTTTTTA Run BLAST on NCBI transcript from alignment at scaffold_208:321294..326364+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00051986 ID=TCONS_00051986|Name=TCONS_00051986|organism=Clytia hemisphaerica|type=transcript|length=5071bp|location=Sequence derived from alignment at scaffold_208:321294..326364+ (Clytia hemisphaerica)
ATAAATTATCAATACAATTGAACAATTAAATGTAAACAATGATTTTAAAT
GTTTGAGTTTGATTATCAAATGCTCGAAttcgaatgttcgaatgttcgaa
tttgaatgtttgaatgtttacattgactcgGTAAACCTTCATTTTACTTT
AGTGGGATCTGGTAGGATTTCAATAcattccaagaagtttggaagaatga
tcttgggcaaacttggcttgatcaatttataatagaataactttacattt
ctattttagcagataatttctgaGCCTATTTGTTTCCATACTGTTATATT
ACTGAATTAATGCTAAATAGTCACAAtagatctttatttttcagctgttt
CAGTCTGATTAGCTTTATATCTGTTTTAGATATCAAAGGTTTGAAAAGTT
TCCTTGTTTCTTTCagtgaaaaaaatatgaattaaaaaGATCAGTGTTCC
TTTTGTAGCAAAGACTTTTCAGAGCTTAACAAACACAATAAGGAGAAGCA
TATTGAAGCTTGTAGAAAGAAGAATGGCAAGAGGAAATCTACATCGACGA
TAACAGCATactatcagaaaaaaacaaatactTCTCAGACCTCCTCCTCT
GAATCAAACTTAACAGAATCACTATCAGTAAGAGAAGAAAACAATTCAGA
CAGGAACAGGCTTGACAATGATGTAGAAATTGTAGAAGAAGTACAGGTTC
GAAAAACATGAGAATTGGTGTTGAACTGAAATACTGTTCTGGATTTTCCC
CAAATCCCCCGATTAACATACTTCAAGACTTTCCCTACCAAATACTGGAC
AGTCAGCCTTTtgtgatttcaaaacaaaaatttcataccAAACAATGTAG
TCTGAAAGACTTTGTGATGGACATCAATGTTGATGGAGAAATAAACAAAG
ACTGTTCTCTGTTAGGAAAAGACTCATCTCTAAAAAGAATCCTAGCACGT
TCTCAAAACGATGATCCTTCAACCCATATTCCAAATGAATGTTTGACATT
CAATCAATTGAAAAACAAGTTCGAGAAAAATCAGAAGTAAGACTCTCTCC
TTTCTATTGAGAATTACAAACTTAACAACAAGGTGGAGCAACTTGGTAAA
ACGCTTTCTTTTTACAAACGCTTTGTTATCTATATTGCTGAAAATAAAGT
TCCACGACTGCACTTTCTTGTCAATGTTGCCCTAAATAACAATCAGAGTA
TCCAATATATTCTTGGCAAGTGCACAGATGCTGTGGCAGGTGTTTATAAA
GCCAGGATGATAAAGACCTGGCGTTTTTGGTTTTAAAGTTTGGAGGCCCA
TTACTACTGGATATTTTGTACAGGGCAAATGTCCTCCCAAGTACATCCCT
TGCTAACAGAATGAGTAAAAAAGGTATTTCATTTAtcattatttcaaaac
aaacacaagAAATACTTTTAAATGCGTTATATTGTATTGAACTCAGTTGA
ACAATGCTCTTTTATTACtgtattgttttttattataaacatcTACCATC
TACCTGTATCTACTCTCGATAAcagtttgttgtttttttatacctttttt
tattttaaggagCACATTTGAAATTATTCCGGGATATGTCATACAAAGat
tctttcaatgaaaatttcaacATGAAGTTTGAAGGAGATGAAAGTTCAAA
ATTTGGTTTGTCTATCAAATCAGATGAGACATTTATCAATCCTCGGTTTC
GATACGATTCAAAAGCCAATAAGATTGTTGGTACCTGCTACGAACACCAT
GGCAATGTAAGCCTAGATTTTAACACAATGGAAGATGCTGAAATCCTACA
AGAAAAACTTTCAGCAGGGGGGATCCATATTCCCAAAGAATGTCTGGTTA
CTGGTAAGTGAAGTTTGTAGCTATATGATATTTAGGTCATTTCCACTGTC
AGTCACTGCTTCATTCCCTGCAATTTTGAGGCTGATCCAACAATACATAA
CTGACTTAATTTTCTGATGACATAGACGAATTGGAACAGTCAACAACATC
AGCCAGagcatcaaaaacaaaatagatgCAAACCCTTTGAATTTTAACAC
TGACGGTGATTCAACTCGAAGACAGGCCATGCACGCTATCACTCAAAATG
AACTGGATTCTAACTCAGATCTTGGGAAGAAAATCCTGCCCTTCCAttga
ttgaaacaaatattggtAACAACCTCGAAACAGTTAAATACGATGCCAAG
CATTTGTCCAAAAGATGCTGGACTTCATTAATAAGTGGCAAGCTAGAGGT
TGCTAATATTCAAGTAACTAAACAGGACGTGGGAGACATAATGAAGCTTG
CAGATATTCGTACACATGAAGTGGAATCACTTGTTTATCCAAGGGGATAA
ACAGAATGTGCCTTTAGCTTCATTGAAGTAATCAAAGACGCCAAAAAGGG
AGCAGATACCTTTCAAATTGactttgataaaaaatgttcttgTCTTGGTT
GCCGCAGTTTATGAAGCTATCATTTGTTTGTATTCATATTCATATGCAGA
GCATTCACTCACAAATCAGGTTTGGTAGTCGTATCATCCATTTTCTCAGT
AGGGGgtagcaaattttcaaaagcatgtttattctttccttgtttgattt
tgatatttgcatttttcattttgaaaggCGGACCTCATTAATGATTTTCA
TATAGTTGTTTCTTTCAGGAAGGCAGGGTAGGGACGTCCAAAATTTGTGT
ATGAGCAGGTATGAGAGCAGAtgatttttagtaaaaattaatTATCCATT
AACAAAAGATAGTCACTTTGGCATTATTAATATAATCTGCTCTTGTAACA
AATTTTCTAACATCCCAATACTTACTAAGGAAATTAATATCTTcttgttt
tgctttgttttacTTCAGGTCCAATTCATTGCAACAGGAGCTTCCTCCCT
TCTCGCTCTGAATAGGGAAGATGCATTTAAGATCCCAAACCAACTCTACC
ACGATCTTCAAAGCACATTTATAGATACTATTTTTTGTATTGCTAAACTA
CAAATTCATGCACCGACGCAATCTTTCTACACAGTATTAAATGGAACAGA
TCCTGCGGAGAGATTTTTCGGTAACTGTCGAATGTCATTCGGCCACAAAA
ACTTGGATGCATTCGAGCTCATAAACTTAACTTCTTCAATATCATTATGC
GACGAGATTTTATCAAATCATCCCAAATGGGTTCATAAAGGTCGATTGTC
TCGCCGGCTTGTATTGGACCACTCAAGTTGCAAAGACTGGTCTGGCAATC
TTGTCGTTTCTAGTGTCAATCTGACAACATCATAGAAGTTTGGACTTCTA
CAAGGTCAAGCTTTAGCAGTCAAAGCTGAATTTGAATTCAATCCTGTTGA
TCTTAGTCTTGAAGGTGTCACTCTAAAGCGCCCTTTCTTTAGAGTTATTG
GTGTCAGTGAAAGGGAGGAAGACTGGTCAGTGATGGAAGAAGAAGTATCA
ACATCAGATTGCGAGTTAGTTCAAGAGAATGAGGAAGTAGACGGAGTAGA
GCTTTTTGATGTCATTGACAGTGACAGAAATGTTTTGTCATATTTTGAAG
TTGGTGGAAAGAATGTCTATAAAGCAACAGTCcttaaacaaatttcaaaa
gaaaagccCCTATCTGCAGATCGATTGAGAAAGGTGAGAGGATTGAGCAA
GTTTACCAGTGATTCTCAGGAAAAGGTTAGTCTGAATGACACAATATCTG
TAGGGGATCCTATCATTGCCGAGGTGGaaaaaagcaaatgaaaatttctg
ttGTTGTTGGTATCAAAGATGGAGATCATGCTAAAACTTTGATTTCGTGT
AAGGACCTGGATAACATTTCTGTTCAAGTACAGGTTAGAGAATTAGAGAT
TACAGAGGTTGATGGAAGACTTTATTCTACCGGAAAGTGTGTTTCAGATC
CATTATTGGTTAAAGGAAAAATTGCATGACCATCAAACCATAGATCTTAT
TGAATCCCCCCCAAAGGCTGCTCCATTTACAATTTTGATAAACAACTAAT
CCAAGACATTAGTGTCCATTTGACTTTAAGCCCAAACCAACCAGAAAACG
CTCCATCATCTTCTGCTTCTGCTGAAGTCGACGCCACATCAAAGAAAGTT
AAGTGCAAGATTTGCACAAAAATCGTAGAGCATAAAGAAATGAGAATTCA
TATCGGAAAACATATCATTCATAAGGAAATAATAATAACACAATCATTAT
GTGGGTTTTGTGGGAAAGAAGGGTCCAAGCCTCACTTGGTATCATCTTCA
AAGAGTGGTAACAATGTATATCACAGTCCTCAATNGAAAGAAGGGTGCAA
GCCTTCCTTGGTATCATCTTCAAAGAGTGGTAACAATGTATATTACAGTC
CTCAATCTAATTGTCTTTACTTTTACAAGTATAAAAGAGTTGGCAATAAG
TCTACCAAAACAACTCCATGTACAAATCGTATCATCACTTGCCCCTCGTG
CAACATGTACACTTGGTCGTACAACTTAAAACTCCACATGACAGAAAACC
ACCCTAATGAGGATCAGATTGAAGTTATCTCAGATAAAGagaaagatatt
ttgaaaaagcgCAAGTGTTAAATTGTTCTAAGAAACTTTGAGATAAGTtg
agatttgtttttatttctatttttatctaaATTCactgttttaaaaatta
cttCTAAACTTGCAGTACATTGAGTTTGATtgaatttgtttatatttttt
atgatttgattGAAGAAACCTAGAAAAACGAGACAAGTTTCTTCTTCTTA
AGCCTATTTGAAAGTTCCCTAAATTCCTCTAATTTTAGTCTGTGAGGGCA
AAGTTTTGCATGCACTAAATCAAGTTGATCATTTTGTAATTTATTATGCG
GtttttgattattatttttCCAATCAGTTACAATACATGTATACTTCATT
ATAAGTTTTCTCAGGTTTTTGTCATTGAGAAGAAATCCCTATGGCAAAAC
AGGAAGGTTTTATTTGTAAGCCACAACTTGATAAAGAGTCTGTGAGAGTT
GATAACATATTAAATCTAGACACCTTTTCTTCAGGGTATCAAAGAAAATC
AAGTGTTTGCTTAGGTTTTTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00051986-exon-scaffold_208-1491911889:321294..322666 | TCONS_00051986-exon-scaffold_208-1491911889:321294..322666 | Clytia hemisphaerica | exon |
| TCONS_00051986-exon-scaffold_208-1510915933:321294..322666 | TCONS_00051986-exon-scaffold_208-1510915933:321294..322666 | Clytia hemisphaerica | exon |
| TCONS_00051986-exon-scaffold_208-1575043694:321294..322666 | TCONS_00051986-exon-scaffold_208-1575043694:321294..322666 | Clytia hemisphaerica | exon |
| TCONS_00051986-exon-scaffold_208-1491911889:322853..324001 | TCONS_00051986-exon-scaffold_208-1491911889:322853..324001 | Clytia hemisphaerica | exon |
| TCONS_00051986-exon-scaffold_208-1510915933:322853..324001 | TCONS_00051986-exon-scaffold_208-1510915933:322853..324001 | Clytia hemisphaerica | exon |
| TCONS_00051986-exon-scaffold_208-1575043694:322853..324001 | TCONS_00051986-exon-scaffold_208-1575043694:322853..324001 | Clytia hemisphaerica | exon |
| TCONS_00051986-exon-scaffold_208-1491911889:324162..326364 | TCONS_00051986-exon-scaffold_208-1491911889:324162..326364 | Clytia hemisphaerica | exon |
| TCONS_00051986-exon-scaffold_208-1510915933:324162..326364 | TCONS_00051986-exon-scaffold_208-1510915933:324162..326364 | Clytia hemisphaerica | exon |
| TCONS_00051986-exon-scaffold_208-1575043694:324162..326364 | TCONS_00051986-exon-scaffold_208-1575043694:324162..326364 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_208 | supercontig | scaffold_208:321294..326364 + |
Blast
The following BLAST results are available for this feature:
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