TCONS_00051955 (transcript) - C. hemisphaerica

Overview
NameTCONS_00051955
Unique NameTCONS_00051955
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2389

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00051955 ID=TCONS_00051955|Name=TCONS_00051955|organism=Clytia hemisphaerica|type=transcript|length=2389bp
ctttttagcaaaaaaaaaaatcaaaaatatattcaagAGGTTTTTATCTT
TTAATAATCGTAatataaattaacaaaaaaattacccAAAAAGTAATAGT
ACAATAAAGTTACAAAATTAAGATAAGGAAGATGACTATTTGACAAGGAC
TTATTCAAAACAATTAAATTATtatcttttctgaaaaatctgaaTTACAA
TCAAAGGCCATGCATtcataatatttgagagaaTCCGAGGTGAAAAGATG
CATGATGCGTCCCTACTGGATCATCTGCAATTtcagttgtaaaattttta
aaaataatagctACATAAAGCATTGTTTCttagaataattttttgaggtt
ttgaaAGCAGACAGAAAAGataatcaaaaaataaagtaaaagaaTTTGAA
CAATTTATTTGCCATCAAATGCCTTTTCTCTTTCAATGACAGAGTCTTCA
AATTTGATCAAGAAAGTGGTTCCTTTATGCCAATGCACAGTCACTGAAGC
AGGAAAACCACATCCACGTAAAATACCTTCCAAAATACCTGCAGTAAAAG
CTGCACAATTTAATTGTCCTTTATCTTTGGGTACAGAGATAAATCGGTTG
ACCAAGGATTCTTTTTCTATGATGTAGTAAGTAGCAACATCATCATTAGC
ATGCTCCAGTTTATCTGCTTCACGACCGAAAAGGGTTTTCCATAAATTTG
AACGTATAAACATCAATATATTTAATAATCTAGTATCCCTGCGATGTCCT
CTTTCTCTTATGGTTAAGGTGTCAAATAACTTCAAACCAATTTGCTCACC
AAATCCAGCCAATTTGTCTTGCAGCTCTGTCACTGTGAACACCCTACTTT
GACAATATTGCACAATCTCAGAGAATAACAATGCATATGAACTTATATTC
ACCTCGTATTTTCCTTTGCTTAAAGGTCTTTCAAGTATATTTACTGATTT
AGATGACATATTATTGATAATTCTGACctaaaaaacaattaggtttgATG
ATAATAATACATAAATCTAAAAGTAAAAGATCAAAAGGCCGTTAGAAAGT
GAATTTTCTCCAGgtttaaaaatttactcatcatAGTAAATCAATCTCAC
TTTGCAGCTAACAAAGTAACTGGTTGGTTTTCTCAATGCATATCATACAA
AAAAGATAAAACCCATCACTAATCTTTGAgctcttttcttctttctttgc
tttcttcttttttgtttgtttttatttcaaaaaatgtctggtcaaaacat
tctataaaatttcaaatgttttatGTGTCTTTATTGGAACGTTTCGAAGA
GATTCAAATGTTAAAATTCTAAAGTCATTATCCTCACCTGCCAATACTgt
cattgaaaaatttaaaaatctaaaaatcttgACAGTTAATAAAAAGTAGA
GACACTAAATAATTCAATATTGATcatcaataaaactttttgctGTCAAA
CAATGCCGGCAAACAAAAAAAGACTAAAAGCAGCCAATTTATAAAGCGCC
CTTCAATATTGACCAAAATGTCTAATGCACCGTTTAGTTGTGTCGACTGC
GCACACGTCCAagcaattttccattgttttgattttagcaaacgTAGAAA
ACTTCACTCTCCTCGTAAAAAAACAGTAGGTAAAATTATGGTTCTCGTAA
GGAAACCCAGCagaaaaatggtaggtaaagaactccttttaatcataact
tcttttcctctagatgaatttttgtgaaattttcaggagagatccatGAA
ATcatcattaatatcatgttcaaatatctaaatcattctcttcaaaggaa
agaaaaaaattgacaatgtttacattcctctagaACCTTCTACAGTACTA
AAATGCGCATTTTACCTATCGTTTCTATGGTGGAACACGCCGAGACTCCT
AAACTGTATATTGGGCAGAAAACATGGAATTCCACCCCAACAAACGTAGG
TTGTGGTCGTTTATTTGtgacaaagaaattttcatcagaaatatcaattt
tagagaaatttatTCTACAGTACGCCAAATGTTACTTTGCCATGTTTCTT
TTCGATCGTTTTGGCtcgttttgaaaaccaaaacaaacagcccAATGTTT
AAGTCTTGGTTTCTCATTGCTTGACGACCAGCATGGCCCTCAAACTTTTG
CAGACGCCTGGTTTTTGCTACTGTTATATATTACGGCGATAATTAAGAGC
AggttcaatagtttgaaacttagctttttttcattttggataaTATGTTT
TTAAGTACAATGAATtgagtaaaaaatattttggtctgaaaattcataat
ggcggatttatgcCAATGTGAAGTTttgcacttaaaaagttttttgatag
aaCCAtgctttttcaaatcaaaatgaggaatggtttttg
Run BLAST on NCBI

protein sequence of TCONS_00051955-protein

>TCONS_00051955-protein ID=TCONS_00051955-protein|Name=TCONS_00051955-protein|organism=Clytia hemisphaerica|type=polypeptide|length=184bp
MSSKSVNILERPLSKGKYEVNISSYALLFSEIVQYCQSRVFTVTELQDKL
AGFGEQIGLKLFDTLTIRERGHRRDTRLLNILMFIRSNLWKTLFGREADK
LEHANDDVATYYIIEKESLVNRFISVPKDKGQLNCAAFTAGILEGILRGC
GFPASVTVHWHKGTTFLIKFEDSVIEREKAFDGK
Run BLAST on NCBI

transcript from alignment at scaffold_206:237998..240386

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00051955 ID=TCONS_00051955|Name=TCONS_00051955|organism=Clytia hemisphaerica|type=transcript|length=2389bp|location=Sequence derived from alignment at scaffold_206:237998..240386 (Clytia hemisphaerica)
caaaaaccattcctcattttgatttgaaaaagcaTGGttctatcaaaaaa
ctttttaagtgcaaAACTTCACATTGgcataaatccgccattatgaattt
tcagaccaaaatattttttactcaATTCATTGTACTTAAAAACATAttat
ccaaaatgaaaaaaagctaagtttcaaactattgaaccTGCTCTTAATTA
TCGCCGTAATATATAACAGTAGCAAAAACCAGGCGTCTGCAAAAGTTTGA
GGGCCATGCTGGTCGTCAAGCAATGAGAAACCAAGACTTAAACATTgggc
tgtttgttttggttttcaaaacgaGCCAAAACGATCGAAAAGAAACATGG
CAAAGTAACATTTGGCGTACTGTAGAataaatttctctaaaattgatatt
tctgatgaaaatttctttgtcaCAAATAAACGACCACAACCTACGTTTGT
TGGGGTGGAATTCCATGTTTTCTGCCCAATATACAGTTTAGGAGTCTCGG
CGTGTTCCACCATAGAAACGATAGGTAAAATGCGCATTTTAGTACTGTAG
AAGGTtctagaggaatgtaaacattgtcaatttttttctttcctttgaag
agaatgatttagatatttgaacatgatattaatgatgATTTCatggatct
ctcctgaaaatttcacaaaaattcatctagaggaaaagaagttatgatta
aaaggagttctttacctaccatttttctGCTGGGTTTCCTTACGAGAACC
ATAATTTTACCTACTGTTTTTTTACGAGGAGAGTGAAGTTTTCTAcgttt
gctaaaatcaaaacaatggaaaattgctTGGACGTGTGCGCAGTCGACAC
AACTAAACGGTGCATTAGACATTTTGGTCAATATTGAAGGGCGCTTTATA
AATTGGCTGCTTTTAGTCTTTTTTTGTTTGCCGGCATTGTTTGACagcaa
aaagttttattgatgATCAATATTGAATTATTTAGTGTCTCTACTTTTTA
TTAACTGTcaagatttttagatttttaaatttttcaatgacAGTATTGGC
AGGTGAGGATAATGACTTTAGAATTTTAACATTTGAATCTCTTCGAAACG
TTCCAATAAAGACACataaaacatttgaaattttatagaatgttttgacc
agacattttttgaaataaaaacaaacaaaaaagaagaaagcaaagaaaga
agaaaagagcTCAAAGATTAGTGATGGGTTTTATCTTTTTTGTATGATAT
GCATTGAGAAAACCAACCAGTTACTTTGTTAGCTGCAAAGTGAGATTGAT
TTACTatgatgagtaaatttttaaacCTGGAGAAAATTCACTTTCTAACG
GCCTTTTGATCTTTTACTTTTAGATTTATGTATTATTATCATcaaaccta
attgttttttagGTCAGAATTATCAATAATATGTCATCTAAATCAGTAAA
TATACTTGAAAGACCTTTAAGCAAAGGAAAATACGAGGTGAATATAAGTT
CATATGCATTGTTATTCTCTGAGATTGTGCAATATTGTCAAAGTAGGGTG
TTCACAGTGACAGAGCTGCAAGACAAATTGGCTGGATTTGGTGAGCAAAT
TGGTTTGAAGTTATTTGACACCTTAACCATAAGAGAAAGAGGACATCGCA
GGGATACTAGATTATTAAATATATTGATGTTTATACGTTCAAATTTATGG
AAAACCCTTTTCGGTCGTGAAGCAGATAAACTGGAGCATGCTAATGATGA
TGTTGCTACTTACTACATCATAGAAAAAGAATCCTTGGTCAACCGATTTA
TCTCTGTACCCAAAGATAAAGGACAATTAAATTGTGCAGCTTTTACTGCA
GGTATTTTGGAAGGTATTTTACGTGGATGTGGTTTTCCTGCTTCAGTGAC
TGTGCATTGGCATAAAGGAACCACTTTCTTGATCAAATTTGAAGACTCTG
TCATTGAAAGAGAAAAGGCATTTGATGGCAAATAAATTGTTCAAAttctt
ttactttattttttgattatCTTTTCTGTCTGCTttcaaaacctcaaaaa
attattctaaGAAACAATGCTTTATGTagctattatttttaaaaatttta
caactgaAATTGCAGATGATCCAGTAGGGACGCATCATGCATCTTTTCAC
CTCGGAttctctcaaatattatgaATGCATGGCCTTTGATTGTAAttcag
atttttcagaaaagataATAATTTAATTGTTTTGAATAAGTCCTTGTCAA
ATAGTCATCTTCCTTATCTTAATTTTGTAACTTTATTGTACTATTACTTT
TTgggtaatttttttgttaatttatatTACGATTATTAAAAGATAAAAAC
CTcttgaatatatttttgatttttttttttgctaaaaag

Coding sequence (CDS) from alignment at scaffold_206:237998..240386

>TCONS_00051955 ID=TCONS_00051955|Name=TCONS_00051955|organism=Clytia hemisphaerica|type=CDS|length=555bp|location=Sequence derived from alignment at scaffold_206:237998..240386 (Clytia hemisphaerica)
ATGTCATCTAAATCAGTAAATATACTTGAAAGACCTTTAAGCAAAGGAAA
ATACGAGGTGAATATAAGTTCATATGCATTGTTATTCTCTGAGATTGTGC
AATATTGTCAAAGTAGGGTGTTCACAGTGACAGAGCTGCAAGACAAATTG
GCTGGATTTGGTGAGCAAATTGGTTTGAAGTTATTTGACACCTTAACCAT
AAGAGAAAGAGGACATCGCAGGGATACTAGATTATTAAATATATTGATGT
TTATACGTTCAAATTTATGGAAAACCCTTTTCGGTCGTGAAGCAGATAAA
CTGGAGCATGCTAATGATGATGTTGCTACTTACTACATCATAGAAAAAGA
ATCCTTGGTCAACCGATTTATCTCTGTACCCAAAGATAAAGGACAATTAA
ATTGTGCAGCTTTTACTGCAGGTATTTTGGAAGGTATTTTACGTGGATGT
GGTTTTCCTGCTTCAGTGACTGTGCATTGGCATAAAGGAACCACTTTCTT
GATCAAATTTGAAGACTCTGTCATTGAAAGAGAAAAGGCATTTGATGGCA
AATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032886XLOC_032886Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051955-proteinTCONS_00051955-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051955-exon-scaffold_206-1491911889:237998..240386TCONS_00051955-exon-scaffold_206-1491911889:237998..240386Clytia hemisphaericaexon
TCONS_00051955-exon-scaffold_206-1510915933:237998..240386TCONS_00051955-exon-scaffold_206-1510915933:237998..240386Clytia hemisphaericaexon
TCONS_00051955-exon-scaffold_206-1575043694:237998..240386TCONS_00051955-exon-scaffold_206-1575043694:237998..240386Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_206supercontigscaffold_206:237998..240386 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
23.1423	22.8368	11.7425	10.9502	12.0627	9.1274	9.09136	8.59119	7.14749	7.10244	5.2017	4.82545	4.13387	4.24284	6.95401	6.73376	9.98029	6.80958	4.58925	4.10252	9.67237	9.11654	15.9849	13.9378	3.91542	4.45775	5.83135	4.20699	8.0773	6.74361
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR007194TRAPP_component
IPR016696TRAPP-I_su5
IPR024096NO_sig/Golgi_transp_ligand-bd
Vocabulary: Cellular Component
TermDefinition
GO:0030008TRAPP complex
Vocabulary: Biological Process
TermDefinition
GO:0048193Golgi vesicle transport
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0048193 Golgi vesicle transport
cellular_component GO:0030008 TRAPP complex
Blast
[Close]
BLAST of TCONS_00051955 vs. Swiss-Prot (Human)
Match: TPPC5 (Trafficking protein particle complex subunit 5 OS=Homo sapiens GN=TRAPPC5 PE=1 SV=1)

HSP 1 Score: 239.58 bits (610), Expect = 4.202e-73
Identity = 102/177 (57.63%), Postives = 141/177 (79.66%), Query Frame = -3 
Query:  408 ILERPLSKGKYEVNISSYALLFSEIVQYCQSRVFTVTELQDKLAGFGEQIGLKLFDTLTIRERGHRRDTRLLNILMFIRSNLWKTLFGREADKLEHANDDVATYYIIEKESLVNRFISVPKDKGQLNCAAFTAGILEGILRGCGFPASVTVHWHKGTTFLIKFEDSVIEREKAFDGK 938
            +LER L++ + EV++S++ALLFSE+VQ+CQSRVF+V ELQ +LA  G Q+G ++ D L  RE+G RR+T++L  L+F++  +WK LFG+EADKLE ANDD  T+YIIE+E L+N +ISVPK+   LNCA+FTAGI+E +L   GFPA VT HWHKGTT +IKFE++VI R++A +G+
Sbjct:   12 LLERALARPRTEVSLSAFALLFSELVQHCQSRVFSVAELQSRLAALGRQVGARVLDALVAREKGARRETKVLGALLFVKGAVWKALFGKEADKLEQANDDARTFYIIEREPLINTYISVPKENSTLNCASFTAGIVEAVLTHSGFPAKVTAHWHKGTTLMIKFEEAVIARDRALEGR 188
The following BLAST results are available for this feature:
BLAST of TCONS_00051955 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TPPC54.202e-7357.63Trafficking protein particle complex subunit 5 OS=... [more]
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