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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00051900 ID=TCONS_00051900|Name=TCONS_00051900|organism=Clytia hemisphaerica|type=transcript|length=879bp
TAACATTCTTCCGAGCCTATTTCACCGAATTTGAAGTTTCTTTTGATATC
AAACCTTTTGGAAAAGTTAAACCTTGGACCAATATTCTTCAAGTGACCGA
ATGGAGCAACATCCAAAAGTACGGCAGCCGAGTCCCAGCTGTATGCTTCC
AACCCAATTCAAACAAATTGACCGTTTGTTCTGCTATCAatggaaagaaa
aatcattGTTGGAACTCCAAAATCGATCTACCAACAAACAAGTTCTCGAA
AGTCATCATCAAGCAGAAATTAGTTGGTGGAAAATACTATTACACCATAA
CCATCGATTCCAAAAAGGTTTACAATATCGTGAACACAAAACCAATCACT
TTATACAGAGCGAGAGTCTTCTTATCTGATCCTTGGTATCCGGCAGCCCA
AGCGTTTGTCAAACAAGTGAAAGTCTCCACTACTTCTACTGAATCCCTGG
CATTTGGTTCCTACCGAAATCAAGAGCTCTGTCGATATGTTATCCGatta
atttgaaatcaaaatgcaTCAAAACGAATCCTCTCCCAGCCAATAATTGG
TATAACGTTCGAATTTACCAGAAGTTTGATAAGAAACGTTTCCAGTTCAA
GCTCACTATTGAAGTCAACAACCAGCAATTTGGTGTGTTCATTAACTGGT
GTCCGAAATCCTACCAAGGTGTCCGATTATTCGCTGCTGATCCATTCTAC
AGTGCTGCACTTGCTTCGGTCAGAAATATTGTCTTCCGCAACATCCAACC
TGCCTggtgaaaacaattgaaaatatttcccgAGAATTCGAATTGGGGAT
TTTATTTAACGgctattattttgaatttgataacCATTTGTATCTTGTCG
TAAAacttaatattttttgataaaaaatg Run BLAST on NCBI protein sequence of TCONS_00051900-protein >TCONS_00051900-protein ID=TCONS_00051900-protein|Name=TCONS_00051900-protein|organism=Clytia hemisphaerica|type=polypeptide|length=167bp
TFFRAYFTEFEVSFDIKPFGKVKPWTNILQVTEWSNIQKYGSRVPAVCFQ
PNSNKLTVCSAINGKKNHCWNSKIDLPTNKFSKVIIKQKLVGGKYYYTIT
IDSKKVYNIVNTKPITLYRARVFLSDPWYPAAQAFVKQVKVSTTSTESLA
FGSYRNQELCRYVIRLI Run BLAST on NCBI transcript from alignment at scaffold_206:156212..158540+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00051900 ID=TCONS_00051900|Name=TCONS_00051900|organism=Clytia hemisphaerica|type=transcript|length=2329bp|location=Sequence derived from alignment at scaffold_206:156212..158540+ (Clytia hemisphaerica)
TAACATTCTTCCGAGCCTATTTCACCGAATTTGAAGTTTCTTTTGATATC
AAACCTTTTGGAAAAGTTAAACCTTGGACCAATATTCTTCAAGTGACCGA
ATGGAGCAACATCCAAAAGTACGGCAGCCGAGTCCCAGCTGTATGCTTCC
AACCCAATTCAAACAAATTGACCGTTTGTTCTGCTATCAatggaaagaaa
aatcattGTTGGAACTCCAAAATCGATCTACCAACAAACAAGTTCTCGAA
AGTCATCATCAAGCAGAAATTAGTTGGTGGAAAATACTATTACACCATAA
CCATCGATTCCAAAAAGGTTTACAATATCGTGAACACAAAACCAATCACT
TTATACAGAGCGAGAGTCTTCTTATCTGATCCTTGGTATCCGGCAGCCCA
AGCGTTTGTCAAACAAGTGAAAGTCTCCACTACTTCTACTGGTAAGTACC
GgcaaacaatagagagtttatgtatttgctctTATGAAGACGGTAGGGTG
ACTGAAGCGACttggaataacccgcacttctgacccgcaaagtcgaggac
ggtaaaagtgctgatttaccgccgtcctcagctggtcagaatttaatcaa
attagaaccttaccgtctccattacagaaaaaaaaacacttaaaCTCGGT
AATAGCGAGTTtctgtatttgcacttttgaggacggcagagtaactgaag
cgatttggaaaaacccgcacttctgacccgcaaaatcgaggacggtaaaa
gtgctgatttaccatcgtcctcagctggtcaggatctagtcaaattacaa
ccttaccgtctccgtcgctgaaaaacacacatacgtAAACTCGGTATTAT
TCCTTACATCACGGAACCACCAGCTGATTGACTTTAAGTAACTTAAAATC
ATTaaataaccaatcagctgtttggttaatgatgtaatgttagagACATT
GCAATAACTTATATCACCAATACACATCAACGCCTTAGCTGAAAGTTAAA
TAACAGTGGATTGGTTTTTGTGAGTCAAATCCTTAAATCTTTTTAATGGC
ACGCTTACAGATACAGTTGAGTCTCTTAACCTtgaacctctacaactcga
atgtcttgaacaatttttctcCTCTCTTCAGTAAACAATGTTTACCCCAA
ATTCTTACTCCATAGCTCGAAATTTCCTTTACTTGAACAAATGTGCTCTC
CCCATGACGGTTTGAGGTATAGAGACTCATCTGTATTGATACTTGACTAT
TTTGAACCCAAAAAAGTCGAACTGACATCTGTTATAGAGTTTTTTATTAG
TTGTATAATTCTTTTGGATTCAATAGTTCTATTCTGaagaccccttccca
ctggaatttttggccaaaatatcgacCCCAGTGGAAAAgcgtgctatttt
ttccatccacactgaattttctggcttgaaaataattgaattcaaatccc
cagccataagaaatcataggaatatcaatccccatcaagttttggtttgt
tatttttacccccactggctgaaaaaaatcccaccgggtctgtgagaaag
gggtgtttgtAAGTTCAAAATTGTGAAACCAGAATGCTAAGCTCAAATTT
CTCGTTAAGCAAGAGAGCAGAAGCCTACCCTAACCAACTAGGAAACCAGT
CCAACCATTAAGATTGCAATATTTCATATACATCTCTTGTCTCCCAGCAC
TCAATatttatcttcaaattttacttttcagGAGGATTTAAACTTCAACG
TGGAAAATTGATGAATGTCATTCTAAGAGTCGATCGTGAATGGTTCTTAT
CATTTGATATTAAGGCTGAAAACAAAGTCTTGGACACGTGGGGTAGCATT
CTGCACCTTTCTACAGGAAGAGACTCAGGTGCTGGCTCAAGAATCCCTGG
CATTTGGTTCCTACCGAAATCAAGAGCTCTGTCGATATGTTATCCGatta
atttgaaatcaaaatgcaTCAAAACGAATCCTCTCCCAGCCAATAATTGG
TATAACGTTCGAATTTACCAGAAGTTTGATAAGAAACGTTTCCAGTTCAA
GCTCACTATTGAAGTCAACAACCAGCAATTTGGTGTGTTCATTAACTGGT
GTCCGAAATCCTACCAAGGTGTCCGATTATTCGCTGCTGATCCATTCTAC
AGTGCTGCACTTGCTTCGGTCAGAAATATTGTCTTCCGCAACATCCAACC
TGCCTggtgaaaacaattgaaaatatttcccgAGAATTCGAATTGGGGAT
TTTATTTAACGgctattattttgaatttgataacCATTTGTATCTTGTCG
TAAAacttaatattttttgataaaaaatg Coding sequence (CDS) from alignment at scaffold_206:156212..158540+ >TCONS_00051900 ID=TCONS_00051900|Name=TCONS_00051900|organism=Clytia hemisphaerica|type=CDS|length=1008bp|location=Sequence derived from alignment at scaffold_206:156212..158540+ (Clytia hemisphaerica)
ACATTCTTCCGAGCCTATTTCACCGAATTTGAAGTTTCTTTTGATATCAA
ACCTTTTGGAAAAGTTAAACCTTGGACCAATATTCTTCAAGTGACCGAAT
GGAGCAACATCCAAAAGTACGGCAGCCGAGTCCCAGCTGTATGCTTCCAA
CCCAATTCAAACAAATTGACCGTTTGTTCTGCTATCAatggaaagaaaaa
tcattGTTGGAACTCCAAAATCGATCTACCAACAAACAAGTTCTCGAAAG
TCATCATCAAGCAGAAATTAGTTGGTGGAAAATACTATTACACCATAACC
ATCGATTCCAAAAAGGTTTACAATATCGTGAACACAAAACCAATCACTTT
ATACAGAGCGAGAGTCTTCTTATCTGATCCTTGGTATCCGGCAGCCCAAG
CGTTTGTCAAACAAGTGAAAGTCTCCACTACTTCTACTGAATCCCTGGCA
TTTGGTTCCTACCGAAATCAAGAGCTCTGTCGATATGTTATCCGattaat
ttgaACATTCTTCCGAGCCTATTTCACCGAATTTGAAGTTTCTTTTGATA
TCAAACCTTTTGGAAAAGTTAAACCTTGGACCAATATTCTTCAAGTGACC
GAATGGAGCAACATCCAAAAGTACGGCAGCCGAGTCCCAGCTGTATGCTT
CCAACCCAATTCAAACAAATTGACCGTTTGTTCTGCTATCAatggaaaga
aaaatcattGTTGGAACTCCAAAATCGATCTACCAACAAACAAGTTCTCG
AAAGTCATCATCAAGCAGAAATTAGTTGGTGGAAAATACTATTACACCAT
AACCATCGATTCCAAAAAGGTTTACAATATCGTGAACACAAAACCAATCA
CTTTATACAGAGCGAGAGTCTTCTTATCTGATCCTTGGTATCCGGCAGCC
CAAGCGTTTGTCAAACAAGTGAAAGTCTCCACTACTTCTACTGAATCCCT
GGCATTTGGTTCCTACCGAAATCAAGAGCTCTGTCGATATGTTATCCGat
taatttga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00051900-exon-scaffold_206-1491911889:156212..156652 | TCONS_00051900-exon-scaffold_206-1491911889:156212..156652 | Clytia hemisphaerica | exon |
| TCONS_00051900-exon-scaffold_206-1510915933:156212..156652 | TCONS_00051900-exon-scaffold_206-1510915933:156212..156652 | Clytia hemisphaerica | exon |
| TCONS_00051900-exon-scaffold_206-1575043694:156212..156652 | TCONS_00051900-exon-scaffold_206-1575043694:156212..156652 | Clytia hemisphaerica | exon |
| TCONS_00051900-exon-scaffold_206-1491911889:158103..158540 | TCONS_00051900-exon-scaffold_206-1491911889:158103..158540 | Clytia hemisphaerica | exon |
| TCONS_00051900-exon-scaffold_206-1510915933:158103..158540 | TCONS_00051900-exon-scaffold_206-1510915933:158103..158540 | Clytia hemisphaerica | exon |
| TCONS_00051900-exon-scaffold_206-1575043694:158103..158540 | TCONS_00051900-exon-scaffold_206-1575043694:158103..158540 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_206 | supercontig | scaffold_206:156212..158540 + |
Blast
The following BLAST results are available for this feature:
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