TCONS_00051900 (transcript) - C. hemisphaerica

Overview
NameTCONS_00051900
Unique NameTCONS_00051900
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length879

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00051900 ID=TCONS_00051900|Name=TCONS_00051900|organism=Clytia hemisphaerica|type=transcript|length=879bp
TAACATTCTTCCGAGCCTATTTCACCGAATTTGAAGTTTCTTTTGATATC
AAACCTTTTGGAAAAGTTAAACCTTGGACCAATATTCTTCAAGTGACCGA
ATGGAGCAACATCCAAAAGTACGGCAGCCGAGTCCCAGCTGTATGCTTCC
AACCCAATTCAAACAAATTGACCGTTTGTTCTGCTATCAatggaaagaaa
aatcattGTTGGAACTCCAAAATCGATCTACCAACAAACAAGTTCTCGAA
AGTCATCATCAAGCAGAAATTAGTTGGTGGAAAATACTATTACACCATAA
CCATCGATTCCAAAAAGGTTTACAATATCGTGAACACAAAACCAATCACT
TTATACAGAGCGAGAGTCTTCTTATCTGATCCTTGGTATCCGGCAGCCCA
AGCGTTTGTCAAACAAGTGAAAGTCTCCACTACTTCTACTGAATCCCTGG
CATTTGGTTCCTACCGAAATCAAGAGCTCTGTCGATATGTTATCCGatta
atttgaaatcaaaatgcaTCAAAACGAATCCTCTCCCAGCCAATAATTGG
TATAACGTTCGAATTTACCAGAAGTTTGATAAGAAACGTTTCCAGTTCAA
GCTCACTATTGAAGTCAACAACCAGCAATTTGGTGTGTTCATTAACTGGT
GTCCGAAATCCTACCAAGGTGTCCGATTATTCGCTGCTGATCCATTCTAC
AGTGCTGCACTTGCTTCGGTCAGAAATATTGTCTTCCGCAACATCCAACC
TGCCTggtgaaaacaattgaaaatatttcccgAGAATTCGAATTGGGGAT
TTTATTTAACGgctattattttgaatttgataacCATTTGTATCTTGTCG
TAAAacttaatattttttgataaaaaatg
Run BLAST on NCBI

protein sequence of TCONS_00051900-protein

>TCONS_00051900-protein ID=TCONS_00051900-protein|Name=TCONS_00051900-protein|organism=Clytia hemisphaerica|type=polypeptide|length=167bp
TFFRAYFTEFEVSFDIKPFGKVKPWTNILQVTEWSNIQKYGSRVPAVCFQ
PNSNKLTVCSAINGKKNHCWNSKIDLPTNKFSKVIIKQKLVGGKYYYTIT
IDSKKVYNIVNTKPITLYRARVFLSDPWYPAAQAFVKQVKVSTTSTESLA
FGSYRNQELCRYVIRLI
Run BLAST on NCBI

transcript from alignment at scaffold_206:156212..158540+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00051900 ID=TCONS_00051900|Name=TCONS_00051900|organism=Clytia hemisphaerica|type=transcript|length=2329bp|location=Sequence derived from alignment at scaffold_206:156212..158540+ (Clytia hemisphaerica)
TAACATTCTTCCGAGCCTATTTCACCGAATTTGAAGTTTCTTTTGATATC AAACCTTTTGGAAAAGTTAAACCTTGGACCAATATTCTTCAAGTGACCGA ATGGAGCAACATCCAAAAGTACGGCAGCCGAGTCCCAGCTGTATGCTTCC AACCCAATTCAAACAAATTGACCGTTTGTTCTGCTATCAatggaaagaaa aatcattGTTGGAACTCCAAAATCGATCTACCAACAAACAAGTTCTCGAA AGTCATCATCAAGCAGAAATTAGTTGGTGGAAAATACTATTACACCATAA CCATCGATTCCAAAAAGGTTTACAATATCGTGAACACAAAACCAATCACT TTATACAGAGCGAGAGTCTTCTTATCTGATCCTTGGTATCCGGCAGCCCA AGCGTTTGTCAAACAAGTGAAAGTCTCCACTACTTCTACTGGTAAGTACC GgcaaacaatagagagtttatgtatttgctctTATGAAGACGGTAGGGTG ACTGAAGCGACttggaataacccgcacttctgacccgcaaagtcgaggac ggtaaaagtgctgatttaccgccgtcctcagctggtcagaatttaatcaa attagaaccttaccgtctccattacagaaaaaaaaacacttaaaCTCGGT AATAGCGAGTTtctgtatttgcacttttgaggacggcagagtaactgaag cgatttggaaaaacccgcacttctgacccgcaaaatcgaggacggtaaaa gtgctgatttaccatcgtcctcagctggtcaggatctagtcaaattacaa ccttaccgtctccgtcgctgaaaaacacacatacgtAAACTCGGTATTAT TCCTTACATCACGGAACCACCAGCTGATTGACTTTAAGTAACTTAAAATC ATTaaataaccaatcagctgtttggttaatgatgtaatgttagagACATT GCAATAACTTATATCACCAATACACATCAACGCCTTAGCTGAAAGTTAAA TAACAGTGGATTGGTTTTTGTGAGTCAAATCCTTAAATCTTTTTAATGGC ACGCTTACAGATACAGTTGAGTCTCTTAACCTtgaacctctacaactcga atgtcttgaacaatttttctcCTCTCTTCAGTAAACAATGTTTACCCCAA ATTCTTACTCCATAGCTCGAAATTTCCTTTACTTGAACAAATGTGCTCTC CCCATGACGGTTTGAGGTATAGAGACTCATCTGTATTGATACTTGACTAT TTTGAACCCAAAAAAGTCGAACTGACATCTGTTATAGAGTTTTTTATTAG TTGTATAATTCTTTTGGATTCAATAGTTCTATTCTGaagaccccttccca ctggaatttttggccaaaatatcgacCCCAGTGGAAAAgcgtgctatttt ttccatccacactgaattttctggcttgaaaataattgaattcaaatccc cagccataagaaatcataggaatatcaatccccatcaagttttggtttgt tatttttacccccactggctgaaaaaaatcccaccgggtctgtgagaaag gggtgtttgtAAGTTCAAAATTGTGAAACCAGAATGCTAAGCTCAAATTT CTCGTTAAGCAAGAGAGCAGAAGCCTACCCTAACCAACTAGGAAACCAGT CCAACCATTAAGATTGCAATATTTCATATACATCTCTTGTCTCCCAGCAC TCAATatttatcttcaaattttacttttcagGAGGATTTAAACTTCAACG TGGAAAATTGATGAATGTCATTCTAAGAGTCGATCGTGAATGGTTCTTAT CATTTGATATTAAGGCTGAAAACAAAGTCTTGGACACGTGGGGTAGCATT CTGCACCTTTCTACAGGAAGAGACTCAGGTGCTGGCTCAAGAATCCCTGG CATTTGGTTCCTACCGAAATCAAGAGCTCTGTCGATATGTTATCCGatta atttgaaatcaaaatgcaTCAAAACGAATCCTCTCCCAGCCAATAATTGG TATAACGTTCGAATTTACCAGAAGTTTGATAAGAAACGTTTCCAGTTCAA GCTCACTATTGAAGTCAACAACCAGCAATTTGGTGTGTTCATTAACTGGT GTCCGAAATCCTACCAAGGTGTCCGATTATTCGCTGCTGATCCATTCTAC AGTGCTGCACTTGCTTCGGTCAGAAATATTGTCTTCCGCAACATCCAACC TGCCTggtgaaaacaattgaaaatatttcccgAGAATTCGAATTGGGGAT TTTATTTAACGgctattattttgaatttgataacCATTTGTATCTTGTCG TAAAacttaatattttttgataaaaaatg

Coding sequence (CDS) from alignment at scaffold_206:156212..158540+

>TCONS_00051900 ID=TCONS_00051900|Name=TCONS_00051900|organism=Clytia hemisphaerica|type=CDS|length=1008bp|location=Sequence derived from alignment at scaffold_206:156212..158540+ (Clytia hemisphaerica)
ACATTCTTCCGAGCCTATTTCACCGAATTTGAAGTTTCTTTTGATATCAA
ACCTTTTGGAAAAGTTAAACCTTGGACCAATATTCTTCAAGTGACCGAAT
GGAGCAACATCCAAAAGTACGGCAGCCGAGTCCCAGCTGTATGCTTCCAA
CCCAATTCAAACAAATTGACCGTTTGTTCTGCTATCAatggaaagaaaaa
tcattGTTGGAACTCCAAAATCGATCTACCAACAAACAAGTTCTCGAAAG
TCATCATCAAGCAGAAATTAGTTGGTGGAAAATACTATTACACCATAACC
ATCGATTCCAAAAAGGTTTACAATATCGTGAACACAAAACCAATCACTTT
ATACAGAGCGAGAGTCTTCTTATCTGATCCTTGGTATCCGGCAGCCCAAG
CGTTTGTCAAACAAGTGAAAGTCTCCACTACTTCTACTGAATCCCTGGCA
TTTGGTTCCTACCGAAATCAAGAGCTCTGTCGATATGTTATCCGattaat
ttgaACATTCTTCCGAGCCTATTTCACCGAATTTGAAGTTTCTTTTGATA
TCAAACCTTTTGGAAAAGTTAAACCTTGGACCAATATTCTTCAAGTGACC
GAATGGAGCAACATCCAAAAGTACGGCAGCCGAGTCCCAGCTGTATGCTT
CCAACCCAATTCAAACAAATTGACCGTTTGTTCTGCTATCAatggaaaga
aaaatcattGTTGGAACTCCAAAATCGATCTACCAACAAACAAGTTCTCG
AAAGTCATCATCAAGCAGAAATTAGTTGGTGGAAAATACTATTACACCAT
AACCATCGATTCCAAAAAGGTTTACAATATCGTGAACACAAAACCAATCA
CTTTATACAGAGCGAGAGTCTTCTTATCTGATCCTTGGTATCCGGCAGCC
CAAGCGTTTGTCAAACAAGTGAAAGTCTCCACTACTTCTACTGAATCCCT
GGCATTTGGTTCCTACCGAAATCAAGAGCTCTGTCGATATGTTATCCGat
taatttga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032850XLOC_032850Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051900-proteinTCONS_00051900-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051900-exon-scaffold_206-1491911889:156212..156652TCONS_00051900-exon-scaffold_206-1491911889:156212..156652Clytia hemisphaericaexon
TCONS_00051900-exon-scaffold_206-1510915933:156212..156652TCONS_00051900-exon-scaffold_206-1510915933:156212..156652Clytia hemisphaericaexon
TCONS_00051900-exon-scaffold_206-1575043694:156212..156652TCONS_00051900-exon-scaffold_206-1575043694:156212..156652Clytia hemisphaericaexon
TCONS_00051900-exon-scaffold_206-1491911889:158103..158540TCONS_00051900-exon-scaffold_206-1491911889:158103..158540Clytia hemisphaericaexon
TCONS_00051900-exon-scaffold_206-1510915933:158103..158540TCONS_00051900-exon-scaffold_206-1510915933:158103..158540Clytia hemisphaericaexon
TCONS_00051900-exon-scaffold_206-1575043694:158103..158540TCONS_00051900-exon-scaffold_206-1575043694:158103..158540Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_206supercontigscaffold_206:156212..158540 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.280087 0 0.0599548 0.175969 0.214226 0.28214 0.34039 0.152424 4.94051 1.95349 0.0945887 2.5391 0.375015 0.200627 0.951529 0.45514 0.210261 0.21551 0.225156 0.207708 0.0902681 0.224748 0.0607136 0.165592 0 0.0894611 0 0 0.228408 0.11976
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00051900 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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