TCONS_00051940 (transcript) - C. hemisphaerica

Overview
NameTCONS_00051940
Unique NameTCONS_00051940
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length703

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00051940 ID=TCONS_00051940|Name=TCONS_00051940|organism=Clytia hemisphaerica|type=transcript|length=703bp
GTCTAAGAACTAAGAATGACAAACAGGAATGTCGTTTTAAATTTCCTTTT
GAATGCTGCGAGAAAACACATTTaacctttgaaaaagtaaaattgaagAG
AGGCGGTGAAAAGTATATTCCAAACATTGTTCTGAAAAGAAATGATCCTA
GAATGAATAGACATCAACAACTTCAATTACAATCATGCNAGTATCGAAGA
TTTGCAAGATCTCGTGAGAGATAATGATCACTATGTAGTAATGAAAAAAC
TGCAAAGATACTCAAAGAATGTAACAGGTACGAATACCNCCTTGACCACA
ATGCTTGCTTGAATTATATTGCCAAGTATGCATCAAAAGCAGAAAAGATA
TCTGATGTTgcaaaagaagcatttacatCTGTCATTGGTAACCTTTCAGG
AAAGGAAACTTCTggtaatatttttcgaaaatTGATTATCAAATCTGTCG
GTGAAAGAGACTTTAGTGCTCAAGAAGTAATGCATCAAATTATGTCTTTG
AAACTACATTGCTCTTCATTTGATGTTGTAAGTTGCTCTCTTGAGGGATC
AAGACAAATGAAAATTGACAATGATGGTGTTGAAACCAAAACCTCTTTTT
TAGATGATTATGCTTCCAGATATGTTTATGAAGACAATGAGATTAGGCAA
AGTAACCTCATAGATTTTGTTTCGAACTGGAAAATAAGTGCTAAAGACAA
AAA
Run BLAST on NCBI

transcript from alignment at scaffold_206:38530..39232

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00051940 ID=TCONS_00051940|Name=TCONS_00051940|organism=Clytia hemisphaerica|type=transcript|length=703bp|location=Sequence derived from alignment at scaffold_206:38530..39232 (Clytia hemisphaerica)
TTTTTGTCTTTAGCACTTATTTTCCAGTTCGAAACAAAATCTATGAGGTT
ACTTTGCCTAATCTCATTGTCTTCATAAACATATCTGGAAGCATAATCAT
CTAAAAAAGAGGTTTTGGTTTCAACACCATCATTGTCAATTTTCATTTGT
CTTGATCCCTCAAGAGAGCAACTTACAACATCAAATGAAGAGCAATGTAG
TTTCAAAGACATAATTTGATGCATTACTTCTTGAGCACTAAAGTCTCTTT
CACCGACAGATTTGATAATCAattttcgaaaaatattaccAGAAGTTTCC
TTTCCTGAAAGGTTACCAATGACAGatgtaaatgcttcttttgcAACATC
AGATATCTTTTCTGCTTTTGATGCATACTTGGCAATATAATTCAAGCAAG
CATTGTGGTCAAGGNGGTATTCGTACCTGTTACATTCTTTGAGTATCTTT
GCAGTTTTTTCATTACTACATAGTGATCATTATCTCTCACGAGATCTTGC
AAATCTTCGATACTNGCATGATTGTAATTGAAGTTGTTGATGTCTATTCA
TTCTAGGATCATTTCTTTTCAGAACAATGTTTGGAATATACTTTTCACCG
CCTCTcttcaattttactttttcaaaggttAAATGTGTTTTCTCGCAGCA
TTCAAAAGGAAATTTAAAACGACATTCCTGTTTGTCATTCTTAGTTCTTA
GAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032871XLOC_032871Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051940-exon-scaffold_206-1491911889:38530..39232TCONS_00051940-exon-scaffold_206-1491911889:38530..39232Clytia hemisphaericaexon
TCONS_00051940-exon-scaffold_206-1510915933:38530..39232TCONS_00051940-exon-scaffold_206-1510915933:38530..39232Clytia hemisphaericaexon
TCONS_00051940-exon-scaffold_206-1575043694:38530..39232TCONS_00051940-exon-scaffold_206-1575043694:38530..39232Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_206supercontigscaffold_206:38530..39232 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
5.77967	3.43451	2.8506	1.47524	1.81115	1.53951	0.510678	1.02673	0.801873	1.2209	1.05736	3.17037	1.51777	1.78733	0.441019	0.625373	0	0.479314	0.209497	0.825291	2.0007	3.68371	0.374229	0.631847	0.804101	1.16344	1.34904	2.00865	0.857673	1.38782
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00051940 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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