TCONS_00051937 (transcript) - C. hemisphaerica

Overview
NameTCONS_00051937
Unique NameTCONS_00051937
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length484

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00051937 ID=TCONS_00051937|Name=TCONS_00051937|organism=Clytia hemisphaerica|type=transcript|length=484bp
atctagcccttcttCTACGGACATAGCTAACACAAAATGCCACCGTATTG
ATATAGTCTGGAATAAACATGAAAGTCTGAGACAGTAGActggatatttt
ttttctaaataaaaaagagCTGCGATGAAAACACTAATACACGTGGAAAG
AGAAACAATAAACTCACCGGTTTCGTGAGCTAAGGAACCTGTCACTCCGT
CTCCGAGATACCACGCTGGCGTCGTTGGATTCATCAGGCGGTAACCTCCA
CAGCGTCTTCTGTTTCACCCCCTAGCCGTGACAGACTATGGAGGCGGAGG
GCACCTCCCGTGAGGTATCCTACCAACGTGGTGACTGACCTTTCAGTTTA
CAACACCCCTTTTGGTCCAAATGAACCGACTTGCGTTCTCAACAGTTTCC
TCGATCTGTTCGACCATTTTCTTTCCTTCAGTACGATTCTAACTCCAACT
TCAAAGGGTAGATAAGTGACAGCCCAACTTTGAC
Run BLAST on NCBI

transcript from alignment at scaffold_206:22608..23091

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00051937 ID=TCONS_00051937|Name=TCONS_00051937|organism=Clytia hemisphaerica|type=transcript|length=484bp|location=Sequence derived from alignment at scaffold_206:22608..23091 (Clytia hemisphaerica)
GTCAAAGTTGGGCTGTCACTTATCTACCCTTTGAAGTTGGAGTTAGAATC
GTACTGAAGGAAAGAAAATGGTCGAACAGATCGAGGAAACTGTTGAGAAC
GCAAGTCGGTTCATTTGGACCAAAAGGGGTGTTGTAAACTGAAAGGTCAG
TCACCACGTTGGTAGGATACCTCACGGGAGGTGCCCTCCGCCTCCATAGT
CTGTCACGGCTAGGGGGTGAAACAGAAGACGCTGTGGAGGTTACCGCCTG
ATGAATCCAACGACGCCAGCGTGGTATCTCGGAGACGGAGTGACAGGTTC
CTTAGCTCACGAAACCGGTGAGTTTATTGTTTCTCTTTCCACGTGTATTA
GTGTTTTCATCGCAGctcttttttatttagaaaaaaaatatccagTCTAC
TGTCTCAGACTTTCATGTTTATTCCAGACTATATCAATACGGTGGCATTT
TGTGTTAGCTATGTCCGTAGaagaagggctagat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032868XLOC_032868Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051937-exon-scaffold_206-1491911889:22608..23091TCONS_00051937-exon-scaffold_206-1491911889:22608..23091Clytia hemisphaericaexon
TCONS_00051937-exon-scaffold_206-1510915933:22608..23091TCONS_00051937-exon-scaffold_206-1510915933:22608..23091Clytia hemisphaericaexon
TCONS_00051937-exon-scaffold_206-1575043694:22608..23091TCONS_00051937-exon-scaffold_206-1575043694:22608..23091Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_206supercontigscaffold_206:22608..23091 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.146072	0.142908	0.173977	0.274958	0.165863	0.310557	0	0.40398	0.130704	0.25776	0.0858005	0.623733	0.366281	0.078615	0	0	0	0.143508	0.249468	0.182523	0	0.268962	0	0.123619	0	0.188791	0.143191	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00051937 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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