TCONS_00051803 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00051803
Unique Name	TCONS_00051803
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	2489

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at scaffold_205:186002..192238+

transcript sequence

>TCONS_00051803 ID=TCONS_00051803|Name=TCONS_00051803|organism=Clytia hemisphaerica|type=transcript|length=2489bp
TTTGAATGTTATTATACGTCTGTgtagtgaaagaaaaaatcacaaaatat
tataaataatAGAATTATATAAACGACGGCATCACGACATTATAAACATG
GTCGTCATAAAAGCAAAGGGAGAATACTACTATCGTGAGTTGGAGCGCCT
TGAAAATGAACCGAAGCTGAcggagaaagaaaagaaagatatttCTCGCC
GCAAGAAAAAGTACCAGGAGCTCGATAATAACTTGATCAAAAGTTTTCAC
AGCCTTTTTACTGGAGGAGTCACGGAGAAGGATGAGCAGATGTTCAAGAA
TGCACGCGAGAAAGCCAACTCCTACTTGACGTCTAATAATGAACCAGCTG
ATCCCAACAACGTGCGATGTCCACCAAAAATCGAATTCGGAAGATACGAA
ATAGAAACATGGTACTCTTCACCTTACCCTCAAGAATATGCCAGTGCACC
AAAACTATACTTATGTGAATTCTGCTTGAAGTACATGAAAACAAGAACTA
TATTGAAACGACATCTGATGAAATGCAACTGGACGCATCCGCCGGCAAAC
GAAATTTATCGTAAAGACAGTCTCTCCGTGTTCGAAGTCGACGGCGCTGT
TAGCAAGATTTATTGTCAGAACTTGTGTTTATTGGCGAAACTGTTTTTGG
ATCACAAAACGTTATACTATGACGTAGAACCATTCTTATTTTACGTTCTC
ACTCGAAACGATAATACTGGCAGTCATCTCATCGGATATTTCTCTAAGGA
GAAAGCATGCCAACAAAAGAACAATGTTTCTTGTATCATGACGATGCCAC
AATACCAACGTCAAGGATATGGACGTTTTCTTATCGACTTCAGTTACCTG
CTATCGAGGAAAGAAGGACAAGCTGGCTCACCGGAGAAACCTCTCAGCGA
TTTAGGGCTAATCACTTATCGAAATTATTGGAAGAATGTCATCGCTGAAT
ATTTGTACGAACACATGAATGATAAAGCAGTCACCATTAAAGCAATCAGT
CAAGCGACGGGAATGGATCCTCACGATATTGCGTCGACTCTTCAATCATT
AGAAGTTGTCCAAGTTCGAAACGGAAAAGTGACGATAGTGATAAACGAGA
GAGTGATAGCTGACCACATGGCTAAACTGAAGCAACAGAAACGAGTACCT
ATCGATGAGGAAGCTCTCAGGTGGACACCCCTCGTTCAATCAGGCAATCC
CGCACAAATCATGAAAGACGCCGCAATGTCTTCTTCTGAAGACGAAGAAG
ATGATGACGATGAGAATGAAGAAGAAACCGAAAATGCCGGTGCCGAAGAT
AAAGATGTCGACGTTGTCATGGAAAACGGCGACGTCACCGAACAAacgaa
acaaaatggcgacgTCGCTGACGAGAAAACTGATTCGGGAGAGGAGAAAC
AAGTGAATGGGGTGAAGGATGAAAAAGAGGCTACTACGAACGAAAGCAAG
GCTACGGAAAATAACGGTGATGACATCGAAATGAAAGAAGTTGACGAGAA
AACGGGTAATGAAAATGTAGAAAAAGACTCcttagaagaagaaaaatctg
aAGAATCGTCCAAagacaatgaaaatgaaaccCCTGTTGATGGACAGGAT
GATGTTGATAAAGTAACGACAGAATCGGATGAGCAAATCACTGAAGAGAC
ATCGactgaaatttcatcaaaagatgAAGAAGAGAAATCGACTGACAAAG
AAGAAGCGTCATCCAAAACTGAAGACAAAGGGGAATCTTGATGTTTATGG
AGTTAACTTTTGTTGAGAATTGTATGGCGGTCCTCTGAGGAGTGAAGAAA
GGCTAGTCAGAGCCTTGGTTTGAACAAGCGTTACAGTTTTTGTATATAAT
TCGTACGCGGAGTTGTTCAGATGATAAAAATAATGAGTTGTCGGTAAAGA
AAGTCGACGGAATATAAAGCCCCGAATTGTTGGTTTTCGCGTtattttac
tcgaaatttttgaCACATTGAACTATGGATTGAATTTCGATTGttgtttt
ttatcatttttttcatcagattttcaaatctttgttatccttttgaattt
ttctacttATTTGAACATCGGTTCGATAAAACCTACCTACcccttttcct
tttttctatCACGACTGTATACTGCCCACTTCaagtaaattttgaaatca
gtAACTCGTCGTTTGTGAACCTGCCTTTTGATTTGACAGTTCTCAAAACA
CCGTTCGATCAAATTATTTTACTTTCTGCTGTATCATATCTTATCACGGG
AAAAATCTACACGGAAGAATTTGTTcacagttttgaaaatttcttcgcAG
CCCCGCTGGTCAAcctttcggatttttaaaaacCTCCCCGGATATAAAGT
AAAGTAGTTGAGTTTTTCAGctgcaaatattttttttccactTTTGAGCT
ATTTTTATTAGGCTTTATCCTACATCTTGgaaataattatcatttttaca
agcccaaatatatttcatctcattggagttaaaatgaca

Run BLAST on NCBI

transcript from alignment at scaffold_205:186002..192238+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00051803 ID=TCONS_00051803|Name=TCONS_00051803|organism=Clytia hemisphaerica|type=transcript|length=6237bp|location=Sequence derived from alignment at scaffold_205:186002..192238+ (Clytia hemisphaerica)
TTTGAATGTTATTATACGTCTGTgtagtgaaagaaaaaatcacaaaatat
tataaataatAGAATTATATAAACGACGGCATCACGACATTATAAACATG
GTCGTCATAAAAGCAAAGGGAGAATACTACTATCGTGAGTTGGAGCGCCT
TGAAAATGAACCGAAGCTGAcggagaaagaaaagaaagatatttCTCGCC
GCAAGAAAAAGTACCAGGAGCTCGATAATAACTTGATCAAAAGTTTTCAC
AGCCTTTTTACTGGAGGTACCGAGtggttgttgttgaaattgacaGTCTG
ACTGATCGGAGAGAATAATGTTTTATTTCTGTAACCAGAAAAgtgttttc
ttattttgtttcGCTTGCGAGCGACATTGTTCATCTTTTAGAGTGTAAAT
CACTTAGCGTCAACCTGGACTGTTTAAACCAATTTGAGTTTTTGGAAAAG
GGGTACCTGCTAAGAAGCAAATACAGTTTTTGCAAAGTGCTAATATCACT
TTGTACTTGCCTCATCACAAATATCAAGCAGGGTGTAGATTTAGCGCTTC
CGGCGCGGGTATCCTTTTCTTTGAACTCCCatcaaatacacgcttttttg
ctttttttacaagaatggtgtttttttcgtttcatcatggatattgtTAA
ATTCTTAGgggaaaatcattttaaaatatttttacagcattcttaggtta
gagtCAAAATTCAAACTAAATTTAACATGCAATACATACGTCCAAAgcat
aaaattgcatttttgtgaaagtgtTGAGCTTTACTGGgggataattggca
atttacagttaaataTGCTCTGAAATGGCATTGTCATGTTTAGtagctaa
attccatgatggcgaTATTCTTtgcatattcttatttttgtggccaattt
catcatgaatattcttatgaaaaaagcgtgtatagaGGATATAATAACTT
AGTCCAGGTCAGAGATGTGACCTCGCAAATCTATTGAGAGTGTAATCTAT
CAACATTTCAAGATTTACGTTTTCAGGGGATTGATCTTTAAGCAAGGTGA
GTCGTGTATATAGAGTTATCTGTGACGGTTTTGTTTTCGTTCTATAGGAG
TCACGGAGAAGGATGAGCAGATGTTCAAGAATGCACGCGAGAAAGCCAAC
TCCTACTTGACGTCTAATAATGAACCAGCTGATCCCAACAACGTGCGATG
TCCACCAAAAATCGAATTCGGAAGATACGAAATAGAAACATGGTACTCTT
CACCTTACCCTCAAGAATATGCCAGGTGAGACATTGATGACGGTCTAAAT
CTATTGCTTTAATGTGGAATTTTTACAGATACTTTGTATGAATCTTCATC
GTGCAAGGGCGCGACGGGCAAATTTACTTCCGACACGCTTTGAAGGTCGT
GAAGATTTTTAACATTCGGAAGGTTTGGATTGCAGAATGTCTTCAGACCT
TGTCTCGAGTTTTGTAGTGGCAGGACTGAACCCCCAGCCCGCGTTTTCGC
TGGTTCCTGGTCAAACCAAATAATTTTGAGGCTTATGAGTAAGAGAAAAC
GAATCCGACTGGGGGTATGGCACGTCAAAGGCCGACTGTCATTCCTCTCC
GGTTTGAAATTGACCGGCTAAGAATATCAGATTTGAGCGTTACGCCGTAC
CTGGTGATTCGTATAATTGATTGGATAGTTCTCGCTTATCTTCAGTGCTC
TTTTAACACATTGTTGAAGATACCATGACTTTTCAACTCTTCGTTTCAGT
GCACCAAAACTATACTTATGTGAATTCTGCTTGAAGTACATGAAAACAAG
AACTATATTGAAACGACATCTGGTAAGTAACAACCCTCTCAAAAGTGGGA
CATTATGCTCTCGTCAAAAACTTTCTTGGATTCAATTTATCATCCTAAAG
CAAATCTCATTCCATCACTCTTTATTCGTGTCTTTTTAGACATGTTTCCT
TTGAGGTCGCTTTCATTCGATTTCCGTTCAGCAGGTTTGCCTAacttact
tttatttattttgatcaGATGAAATGCAACTGGACGCATCCGCCGGCAAA
CGAAATTTATCGTAAAGACAGTCTCTCCGTGTTCGAAGTCGACGGCGCTG
TTAGCAAGGTGAGATTATCGATATTGTATTTGAACTTCTTCAGCTTTTTA
GTATCTCATACACTAGTATTAAACTGACGTGGTATCTTTACCTGATAGGA
CTTCGGGTATACAAAGATATGTATGCCCCTCGTCCGGCCTTACGACGCAA
CTACACCAGCACCTTGGAAATATAATAATGTGGATCTATCATTCTTTTTT
ACCAGATTTATTGTCAGAACTTGTGTTTATTGGCGAAACTGTTTTTGGAT
CACAAAACGTTATACTATGACGTAGAACCATTCTTATTTTACGTTCTCAC
TCGAAACGATAATACTGGCAGTCATCTCATCGGATATTTCTCTAAGGTAA
CTCGATAACTTGTCTATTATGTATAAATGAAATAGTTAAGAACTTTGAAT
TCGACTAATCGATTGTCTCGGCGGGCTTGATTGACAGTCTTTCATTAATG
CTTTTTTTATGTCGTAACTAAGGCTTCTAAATTAATTGGCTGATGATAAA
TCCTTACAACTTTGTTCTGGTTTTTGTAGGAGAAAGCATGCCAACAAAAG
AACAATGTTTCTTGTATCATGACGATGCCACAATACCAACGTCAAGGATA
TGGACGTTTTCTTATCGACTTCAGTAAGTGTAACATTCGTTCATCCATGA
CCAACTTTTAGCCCAATCCGCTCAACACAAATAAATGCAAATATTATTAT
CATAACAAATCAATGAAGACGTGAAACTTAATCTTTCCCACTCAATTTGC
TTACAGGTTACCTGCTATCGAGGAAAGAAGGACAAGCTGGCTCACCGGAG
AAACCTCTCAGCGATTTAGGGCTAATCACTTATCGAAATTATTGGAAGAA
TGTCATCGCTGAATATTTGTACGAACACATGAATGATAAAGCAGTCACCA
TTAAAGGTATTTACCATATTGatatgatatgagccctccccacgggggaa
tgggtcctactccttacgaagtaggaattcctcctttttcaagtCCAGAC
ACCGCTGGTCCTGTGCACGCGAGACACAGATACCACGATGCATAGTGGTG
ACACTCGAACTGCGCGGGAGAGCATATAGCTCGTCGCAGGCGCTGAACGG
GATGAGTGACACCACACACCCCGATGTTTGGCAtatcacccacactcttg
tatcagagtatccaattcccctcacatagtatggttgacccgggcgaagg
tgtgttcacttgccaagtgaaacGTAGTACTACAATGGGAATCGAACTCG
GACCTCCCAGGCGGGAGTGAGGACATCGGAGTGAATAAAACGATTCTGAG
TAAAACTACAATATCTACCCGCAAAATCGTGGAAGGTAAAAGTGCCGATT
TCCAGCCCCGAGGCCGACGGTAAATCAATCAGTTCAGAAGCTAACCGTCC
CATCACAGCCGAAGATGCTAGAGTTGAATATTTAACCTTTctcaagaaaa
agtgaagccataagatttgcgccgcatttcaaatgacggattgaatcttg
ccctttctttttttttaagcaGCATATCTTTCGAGGCCTATCTGGCGATa
ggtttttattttcaatttgacgTTTGTTTAAAAACTATGCGGAtcacgcg
ttttggatggggaataagtggcttcatttcccgtCGAGGGGTTTCGGGGC
TTTGAAGTCAATGCTCCATTGCCAAAAACACTGATAAATAAACCCTGTTA
ACTAGGACTCGAATTCTTGTCTGTcagctaaaaaatctttttcttaaaGG
TCCATTTAGATGGTCTACTTATGCTCTTTTTTCATTGACTTTAGCAATCA
GTCAAGCGACGGGAATGGATCCTCACGATATTGCGTCGACTCTTCAATCA
TTAGAAGTTGTCCAAGTTCGAAACGGAAAGTAAGTTCTTCTTTGGTTTAG
TCTTTAATCACACAACTATTGCATATTGTAAAAACGCTGTCTACCTTATT
ACAGCGAATATAACTAGTTATCGGCGGTGTTAAACTTCATACTACAGAAA
TCACCATAAATTTTTCGCTGTTTCCATTGACACTGCGACTGGTTTTAAAT
AAAGTGGTTTCGGTTAACCTATATTTATTCGTTTAGTGATATGCCTATTT
TCAGCTCCAGCTAACAGAATGTCTATGATTCGGTTTGTCATAAGATTGTA
TATATCGATTCTATTGAGCACTTAGAACtacagaaaaatttcaacttgtG
AATTTCCATACTCTTTTTCTTCAGAGTGACGATAGTGATAAACGAGAGAG
TGATAGCTGACCACATGGCTAAACTGAAGCAACAGAAACGAGTACCTATC
GATGAGGAAGCTCTCAGGTGGACACCCCTCGTTCAATCAGGTATGTTTCT
TGTCATTGATACAACTTCACTTTCACAAACTTACTTCATGGACATTTTGT
CATGATCATAATCTTACATGTGGTTGGAATTCTTTATACTTATCAGCCGT
TCTCTACTTGAACATAAACCAAGGAAATAGATTCGGGTCAACGAAATTTA
CGTAGCATTTGATAACGTTTTCTaagtacagtagagtctctttaactcga
gtCTCTCGAATCGAATGTGTCCTTAACTCGAAAGGTTTTTCTCCTCCTTT
CTGTTAACAAtgcctttaaaaaaaacttactccgtaactcgaagtctccg
taactcgaacaacccagctggcacacaacgtcgtttcaacatttatctaa
cgttcacaacgtccataaaaCGTTAGATGCTTCCCGtgcgggttcgagtt
atagGGACTCAACTGTATTAGATATCCTATGTATTGAGTAACTACCTTCA
CTTGTCGCCTTCCCATTAATTCCGTCCCTTCCGCTTTTCAGGCAATCCCG
CACAAATCATGAAAGACGCCGCAATGTCTTCTTCTGAAGACGAAGAAGAT
GATGACGATGAGAATGAAGAAGAAACCGAAAATGCCGGTGCCGAAGATAA
AGATGTCGACGTTGTCATGGAAAACGGCGACGTCACCGAACAAacgaaac
aaaatggcgacgTCGCTGACGAGAAAACTGATTCGGGAGAGGAGAAACAA
GTGAATGGGGTGAAGGATGAAAAAGAGGCTACTACGAACGAAAGCAAGGC
TACGGAAAATAACGGTGATGACATCGAAATGAAAGAAGTTGACGAGAAAA
CGGGTAATGAAAATGTAGAAAAAGACTCcttagaagaagaaaaatctgaA
GAATCGTCCAAagacaatgaaaatgaaaccCCTGTTGATGGACAGGATGA
TGTTGATAAAGTAACGACAGAATCGGATGAGCAAATCACTGAAGAGACAT
CGactgaaatttcatcaaaagatgAAGAAGAGAAATCGACTGACAAAGAA
GAAGCGTCATCCAAAACTGAAGACAAAGGGGAATCTTGATGTTTATGGAG
TTAACTTTTGTTGAGAATTGTATGGCGGTCCTCTGAGGAGTGAAGAAAGG
CTAGTCAGAGCCTTGGTTTGAACAAGCGTTACAGTTTTTGTATATAATTC
GTACGCGGAGTTGTTCAGATGATAAAAATAATGAGTTGTCGGTAAAGAAA
GTCGACGGAATATAAAGCCCCGAATTGTTGGTTTTCGCGTtattttactc
gaaatttttgaCACATTGAACTATGGATTGAATTTCGATTGttgtttttt
atcatttttttcatcagattttcaaatctttgttatccttttgaattttt
ctacttATTTGAACATCGGTTCGATAAAACCTACCTACcccttttccttt
tttctatCACGACTGTATACTGCCCACTTCaagtaaattttgaaatcagt
AACTCGTCGTTTGTGAACCTGCCTTTTGATTTGACAGTTCTCAAAACACC
GTTCGATCAAATTATTTTACTTTCTGCTGTATCATATCTTATCACGGGAA
AAATCTACACGGAAGAATTTGTTcacagttttgaaaatttcttcgcAGCC
CCGCTGGTCAAcctttcggatttttaaaaacCTCCCCGGATATAAAGTAA
AGTAGTTGAGTTTTTCAGctgcaaatattttttttccactTTTGAGCTAT
TTTTATTAGGCTTTATCCTACATCTTGgaaataattatcatttttacaag
cccaaatatatttcatctcattggagttaaaatgaca

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_032800	XLOC_032800	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_205	supercontig	scaffold_205:186002..192238 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.09772	0.869957	1.51082	2.3038	105.533	79.3691	48.3317	48.88	19.5626	25.537	12.3951	10.2795	8.75549	9.36635	9.11108	12.9284	8.41004	12.6743	9.6212	7.94852	7.0362	4.96751	3.55925	3.17186	10.5459	7.24882	5.07686	3.42833	1.15208	0.436658

Blast

[Close]

BLAST of TCONS_00051803 vs. Swiss-Prot (Human)
Match: KAT6A (Histone acetyltransferase KAT6A OS=Homo sapiens GN=KAT6A PE=1 SV=2)

HSP 1 Score: 444.506 bits (1142), Expect = 5.518e-135
Identity = 206/309 (66.67%), Postives = 248/309 (80.26%), Query Frame = 2

Query:  269 VTEKDEQMFKNAREKANSYLTSNNEPADPNNVRCPPKIEFGRYEIETWYSSPYPQEYASAPKLYLCEFCLKYMKTRTILKRHLMKCNWTHPPANEIYRKDSLSVFEVDGAVSKIYCQNLCLLAKLFLDHKTLYYDVEPFLFYVLTRNDNTGSHLIGYFSKEKACQQKNNVSCIMTMPQYQRQGYGRFLIDFSYLLSRKEGQAGSPEKPLSDLGLITYRNYWKNVIAEYLYEHMNDKAVTIKAISQATGMDPHDIASTLQSLEVVQVRNGKVTIVINERVIADHMAKLKQQKR-VPIDEEALRWTPLVQS 1192
            +TEKD ++F++ +E+A   +     P DP  VRCP  IEFG+YEI TWYSSPYPQEY+  PKLYLCEFCLKYMK+RTIL++H+ KC W HPPANEIYRK+++SVFEVDG VS IYCQNLCLLAKLFLDHKTLYYDVEPFLFYVLT+ND  G HL+GYFSKEK CQQK NVSCIM +PQYQR+GYGRFLIDFSYLLS++EGQAGSPEKPLSDLG ++Y  YWK+VI E LY H NDK ++IK +S+ TG+ P DI STL  L ++  R+ +  I+  E++I DHMAKL+   R V +D E LRWTP++ S
Sbjct:  477 MTEKDMELFRDIQEQALQKVGVTG-PPDPQ-VRCPSVIEFGKYEIHTWYSSPYPQEYSRLPKLYLCEFCLKYMKSRTILQQHMKKCGWFHPPANEIYRKNNISVFEVDGNVSTIYCQNLCLLAKLFLDHKTLYYDVEPFLFYVLTQNDVKGCHLVGYFSKEKHCQQKYNVSCIMILPQYQRKGYGRFLIDFSYLLSKREGQAGSPEKPLSDLGRLSYMAYWKSVILECLY-HQNDKQISIKKLSKLTGICPQDITSTLHHLRMLDFRSDQFVIIRREKLIQDHMAKLQLNLRPVDVDPECLRWTPVIVS 782

The following BLAST results are available for this feature:

BLAST of TCONS_00051803 vs. Swiss-Prot (Human)

BLAST of TCONS_00051803 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
KAT6A	5.518e-135	66.67	Histone acetyltransferase KAT6A OS=Homo sapiens GN...	[more]

You are here

TCONS_00051803 (transcript) - C. hemisphaerica