TCONS_00051781 (transcript) - C. hemisphaerica

Overview
NameTCONS_00051781
Unique NameTCONS_00051781
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length479

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00051781 ID=TCONS_00051781|Name=TCONS_00051781|organism=Clytia hemisphaerica|type=transcript|length=479bp
TGAGATTCGTGATATCTCTTCTCGATATCCCCTGATGGcacctgtttttg
tttttggcaaATTCTATGACCGATCTTTCCTCCACTGGTTTTAAAATTCT
CTGGTGTTTTTTGCTattgatctttttttctttcgctCTATGGTACCACG
ATCTTTAATCAACCGTCCTGTTTTTAGAGCACTGTAACCCTTTTTCCCAT
TTATCTTACACCATTCCACAGCCTCCTCAATTTGAGAACTCTTTTCgttg
atttgttttcttttcactgCAGCTTCGGCCTTAGAACTTGGCTTACCATA
TACCATCACAGCACGTTTTTTcactttaaattcaaatttcggcTTGACCA
TTATGTATCCTAAATTGCTTTTAATCTCTACGCAAAAACAGTTACCACAC
TTTATCAAGCACCGTATTTTTTTGAAGTTAACCTTTTTCGTCTAGCTAAG
GTTAGGGAAATCTGAACCCAAAATATACC
Run BLAST on NCBI

transcript from alignment at scaffold_204:144381..144859

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00051781 ID=TCONS_00051781|Name=TCONS_00051781|organism=Clytia hemisphaerica|type=transcript|length=479bp|location=Sequence derived from alignment at scaffold_204:144381..144859 (Clytia hemisphaerica)
GGTATATTTTGGGTTCAGATTTCCCTAACCTTAGCTAGACGAAAAAGGTT
AACTTCAAAAAAATACGGTGCTTGATAAAGTGTGGTAACTGTTTTTGCGT
AGAGATTAAAAGCAATTTAGGATACATAATGGTCAAgccgaaatttgaat
ttaaagtgAAAAAACGTGCTGTGATGGTATATGGTAAGCCAAGTTCTAAG
GCCGAAGCTGcagtgaaaagaaaacaaatcaacGAAAAGAGTTCTCAAAT
TGAGGAGGCTGTGGAATGGTGTAAGATAAATGGGAAAAAGGGTTACAGTG
CTCTAAAAACAGGACGGTTGATTAAAGATCGTGGTACCATAGagcgaaag
aaaaaaagatcaatAGCAAAAAACACCAGAGAATTTTAAAACCAGTGGAG
GAAAGATCGGTCATAGAATttgccaaaaacaaaaacaggtgCCATCAGGG
GATATCGAGAAGAGATATCACGAATCTCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032789XLOC_032789Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051781-exon-scaffold_204-1491911889:144381..144859TCONS_00051781-exon-scaffold_204-1491911889:144381..144859Clytia hemisphaericaexon
TCONS_00051781-exon-scaffold_204-1510915933:144381..144859TCONS_00051781-exon-scaffold_204-1510915933:144381..144859Clytia hemisphaericaexon
TCONS_00051781-exon-scaffold_204-1575043694:144381..144859TCONS_00051781-exon-scaffold_204-1575043694:144381..144859Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_204supercontigscaffold_204:144381..144859 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.525596	0.25627	0.44633	0.145555	0.354398	0.28005	0.168934	0.948925	0.88582	0.822923	0.798749	1.31267	2.00996	1.08906	0.0746127	0.240213	0.295922	0.101104	1.3968	2.33864	0.254088	0.929515	0.301319	0.136971	0.987541	1.00727	0	0	0.145843	0.148591
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00051781 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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