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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00051574 ID=TCONS_00051574|Name=TCONS_00051574|organism=Clytia hemisphaerica|type=transcript|length=2259bp
TGAGGTGATTACGCTGTACCCGACTGAGTGGCCTGCGttcattgaaattt
tccttGTTCGTCTggaaaactttctttttatagGGGAAGTAcagGTTGAA
ATGGCTGAAGAAGGAAAACCGCAAACAAAAAgacttgaaaatattgaaaa
taatggCTTTGGTCCATTGCCGAAAGCTCGTGGCATGCGTGATACTATCC
TCTTCAGTTTACTAGTCCTTCTTGTGTATTTAAGCAGTGCTGCAGTATAC
CGAAATTTTTACCAAGGAAAACGAGCTCTACTTTCACAAGATGTTGGAGA
TGCCTTTGTAATACTTTTTGGAATCTGTCTTGGGGAGTTGTTGCGCTCAA
TTGTGCTTTACGGAGAGGAGAAGAATCACACAGTATCGCGATATTCAAAC
TCTCATTGGAGGGCTTTACAGGCTTGTGTTCCATACTCTTGGAAGCAAAT
TTGTGTTTTCAAGattatttttttggTTATATCTTTTTGTGGAACTGCTG
TATACtggatttttgctgaaaaggtgtcGTTCAATGCATTCCATTTGTTA
TCCATAACAGTTTTCAGTGCAATCAATCAAGTGGTTCTGTCCAAAGCTGA
AGTCTCCCATTTGAATGAAACTGAAAACAAACATGTTGCTGATGGCCTTG
CATGGAGTTATTACTTTGGCTACCTCAAAATCATGTTGCCTGGTATGAAA
GGAATGTTGGCTTTAGCTCAAGGAGATGAGTACAAAATTGATGGCGAAGA
TATTCGTGATAAATTATCTTCAGAAAAGCTTCACATTGTGATTCCCAAAA
ATTGTTACACCTATGATTCTTTTAAAGAAGTAGATAAAAGAATCACTTTT
AAATGCAGTATGCCACCAATCAAGAAAACCAGAGGAGGAGTTCAAGAGCG
TGTCTACAAGAATactgtttgggaggtaaaactTGAAGATGATGAAGAAC
CACTGTACGTGCTTATGGAATATGCCACACCTGTCCTATCCATGTATGAc
atgaagaaagaagaaagtgCTCACTTCCATGGACAGGATCTTGAAGACCA
AGTTAAAGAATTTACAACCAAACTGCAGAAGATTTTggatgaagatgaag
aatgcAAAAATAAGTATGAAATTGTCTTATGCGGTGATGTCAAATCCCAA
AAACTCAGCGAGATCATGCGCAGAACCATtcaaaaggaaaaggaaaataa
agaaaaggatAAAAACATATAAGCTAACATAATGGTagttttgaattgaa
atatgaaatgaAGTTCCCAGGAAAAAAACCGATTCcacctttttttattt
cagaagtGGTATATTTCCAATCACAGCTATTTTTGGACCCAGGGATGTAA
TAGCGTTTGAGAATGTATATGCCGAACAGGCCACTGAACACTGAGCCAAC
TCTATAGAGAgatttgatttttgtgaaaaagtttacaaaatcAACGAAAA
AGTGTTCCTCAGAgatacaattttgaaaaaatttctaaccTTAGAGACCT
TAGAGAGATCTTTTCTTGGTttccaaaaaaggaaaaatcccaaccttaga
gagacttgaattttttttctaaactccTAGTGATCGTCTGCACATACCCA
GAActatttttgcctaaattcCTCTCCCCCGTTTTTCAGTAACTACTATG
TTGTGAACAGTATTAAATCATTTAAGATAATAACCCACTGAGAACTGTAG
AATCTTTCCAATAAATGTGACATGAAGTCAGAAAACTGGAAACTTCTCAA
AACTAAAGTTTGGATGGGCTATAACTATCATGACTATAGTTTTGCGTTTT
TGtgaattattaaaaaatattaaatttaagTTTTAGGGTAATTTGAAGGG
CTAGTTTTTGTCTCGTTTGTATATACCCTTTTCAAGccatttttgtagat
tttctcaattttcCATACATCATCCCGAATCTTATTGTATAATTGAAAAC
TTTTgtctttaaattttatttttagtatCAATCTTTGTATGGATTTATTA
AACACAAAACTTATAAAAGCGACACCATTTTCACAAGTATTTTTAACGAT
TATCAAGtatagaaaacaatttttaggataaaatataatgtttattgttg
tttttgtaATGTTTTAATTCTTTTATTCCTTGTTAATGGAAGAAATTTAT
TCCATAATCTTGTTGTAAAAGGTGAATGTATTAAAATAAGCAGGTTATAT
TGTAAGAATTCTTTATTTGAAAGACACATATGATTGAAAAAGTTGCGCTA
ATAGCTTTT Run BLAST on NCBI protein sequence of TCONS_00051574-protein >TCONS_00051574-protein ID=TCONS_00051574-protein|Name=TCONS_00051574-protein|organism=Clytia hemisphaerica|type=polypeptide|length=406bp
EVITLYPTEWPAFIEIFLVRLENFLFIGEVQVEMAEEGKPQTKRLENIEN
NGFGPLPKARGMRDTILFSLLVLLVYLSSAAVYRNFYQGKRALLSQDVGD
AFVILFGICLGELLRSIVLYGEEKNHTVSRYSNSHWRALQACVPYSWKQI
CVFKIIFLVISFCGTAVYWIFAEKVSFNAFHLLSITVFSAINQVVLSKAE
VSHLNETENKHVADGLAWSYYFGYLKIMLPGMKGMLALAQGDEYKIDGED
IRDKLSSEKLHIVIPKNCYTYDSFKEVDKRITFKCSMPPIKKTRGGVQER
VYKNTVWEVKLEDDEEPLYVLMEYATPVLSMYDMKKEESAHFHGQDLEDQ
VKEFTTKLQKILDEDEECKNKYEIVLCGDVKSQKLSEIMRRTIQKEKENK
EKDKNI Run BLAST on NCBI transcript from alignment at scaffold_202:1180565..1184920+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00051574 ID=TCONS_00051574|Name=TCONS_00051574|organism=Clytia hemisphaerica|type=transcript|length=4356bp|location=Sequence derived from alignment at scaffold_202:1180565..1184920+ (Clytia hemisphaerica)
TGAGGTGATTACGCTGTACCCGACTGAGTGGCCTGCGttcattgaaattt
tccttGTTCGTCTggaaaactttctttttatagGGGAAGTAcaggtattt
ttttcatttctgtttATAAACACTGAAAGTTTGAGGGTGTTAGGATCATC
AGGTCTTGCAGTGCTTCCTTTCATATTGTATTGCGTTTTATACAGTTTAT
TTCATTATTACATATTCGGATAATAAACTTCACCATTTTGAACATTTGAA
TATAACTAGGGAATCGAAAAGAATTATATTGAACTTCAATTTGGAGGtaa
aaatgtttatatttttaacaaATACCTAGATTTACTGTTTTAATTACAGG
GTGGCCAGAGCTCAGTCAGGGATATCCTTGCAATACTCCTTTAGGAGAAC
GCAACAgtctatagaccttttttcaaagaggacgtcctgttgaataatta
tgtagtccagccataaaaacaatgatagtgtACTGTATcaagcatattgt
aataattatgcatggttttatcattgtttttctgctggactacataatta
ttcaacagggtggcctctttgaaaaaaggtctctatcaggattagaaact
aggctaggcTTATCTCTTTTATCTCTCCCtgccctttacaacaatacaat
gctgacaagttgacacaacacattgactaGTAATCCCTGtagagagaagt
ttatattgaaatctgcgacaaaaaacgaaagtggtttcttctactgattg
cttcctggCGCTCCTTCatagctgtttatcaaatttccaccaatgagatt
gccaCATTTCACACGACCTTTCTATGTATTTTTGGAAGATAGTATGTATT
TTGAAAGATACCGGTAGTATTTTTGTTCACTGGAAAGTATTCTTTCCata
aaactaaaaatcttcaaattttgacaattttttatttttcgatgacatca
ttgtttatgacgtcatttccttaatatctcctgacatatttattttcaga
tataggttgtgacctttttttatcagtttttcatgctctttcgattgcaa
caaaaacttttcaattttactactttttattttggttgccatagtaacca
gtgacgtcagtttccatggcaacaggTGATCACACCCaaccccacctctc
aaattttgatcttctacattcaaggaacaactTTTAGcacttaaatattt
tttgtagcttTAAAAACATGGCATAGCACAGTTGAGAGATAAAGGTTGTC
TGTCGACTTAAGACAAATTTACTATAAATAAGACTCAATAATTCCAAAAA
TAACACACAAATTTCTTTGACAATATGGAGGGCTCATGCACCAACAAAAA
ACATTCTAGAATTTTAGCACTAGAAAAAGGGCAAACTCAAACAAATAATG
TATCTTGAAGCTAATCAATAACATCATAACCTGTCATCGCAATTAACAGA
AGGTTTCTTTTGGTATTACTTATTGACTTTATTTTAACGCATGGTGTATT
CTTATTTTGTTTGTAGGTTGAAATGGCTGAAGAAGGAAAACCGCAAACAA
AAAgacttgaaaatattgaaaataatggCTTTGGTCCATTGCCGAAAGCT
CGTGGCATGCGTGATACTATCCTCTTCAGTTTACTAGTCCTTCTTGTGTA
TTTAAGCAGTGCTGCAGTATACCGAAATTTTTACCAAGGAAAACGAGCTC
TACTTTCACAAGATGTTGGAGATGCCTTTGTAATACTTTTTGGAATCTGT
CTTGGGGAGTTGTTGCGCTCAATTGTGCTTTACGGAGAGGAGAAGAATCA
CACAGTATCGCGATATTCAAACTCTCATTGGAGGGCTTTACAGGCTTGTG
TTCCATACTCTTGGAAGCAAATTTGTGTTTTCAAGGTAAAATTGGTTTTT
TAACATTATTGGAAGTAGTATGTTGAAGATGTCTGACTTTTCTTAACTTA
CAGGGTTGATTACAAAAGacttctgaattttttttatcaacatAGGGCTG
ATAAATTTTAAACTCCCTCCTCCCATGCTGTTATCAAACAAGATTTTTCG
AAACAAAGTTTTACCCTTTTTGGAAACAATTTTCCCAACCATGTCCATCA
GCATCagaggaattttttattttttatttttttatcactgTTTTTAAAGA
GATTTAATCTGATTGATTTAAATTTTTNAGTATCGCGATATTCAAACTCT
CATTGGAAGGCTTTACAGGCTTGTGTTCCATACTCTTGGAAGCAAATTTG
TGTTTTCAAGGTAAAATTGGTCTTTTAACATTATTGGAAATAGTATGTTG
AAGATGTCTGACTTTTCTTAACTTACGGATTTGATTACAAaagacttttg
aattttttttatcaacatAGGGCTGATAAATTTTAAACTCCCTCCTCCCA
TGCTGttatcaaacaaaatttttcgaaacaaAGTTTTACCCTTTTTGGAA
ACAATTTTCCCAACCATGTCCATCAGCATCAgaggaatttttttattttt
tatttttttatcactgtttttaaagagatttaatctgattaatttaaatt
ttcattttagattatttttttggTTATATCTTTTTGTGGAACTGCTGTAT
ACtggatttttgctgaaaaggtgtcGTTCAATGCATTCCATTTGTTATCC
ATAACAGTTTTCAGTGCAATCAATCAAGTGGTTCTGTCCAAAGCTGAAGT
CTCCCATTTGAATGAAACTGAAAACAAACATGTTGCTGATGGCCTTGCAT
GGAGTTATTACTTTGGCTACCTCAAAATCATGTTGCCTGGTATGAAAGGA
ATGTTGGCTTTAGCTCAAGGAGATGAGTACAAAATTGATGGCGAAGATAT
TCGTGATAAATTATCTTCAGAAAAGCTTCACATTGTGATTCCCAAAAATT
GTTACACCTATGATTCTTTTAAAGAAGTAGATAAAAGAATCACTTTTAAA
TGCAGTATGCCACCAATCAAGAAAACCAGAGGAGGAGTTCAAGAGCGTGT
CTACAAGAATactgtttgggaggtaaaactTGAAGATGATGAAGAACCAC
TGTACGTGCTTATGGAATATGCCACACCTGTCCTATCCATGTATGAcatg
aagaaagaagaaagtgCTCACTTCCATGGACAGGATCTTGAAGACCAAGT
TAAAGAATTTACAACCAAACTGCAGAAGATTTTggatgaagatgaagaat
gcAAAAATAAGTATGAAATTGTCTTATGCGGTGATGTCAAATCCCAAAAA
CTCAGCGAGATCATGCGCAGAACCATtcaaaaggaaaaggaaaataaaga
aaaggatAAAAACATATAAGCTAACATAATGGTagttttgaattgaaata
tgaaatgaAGTTCCCAGGAAAAAAACCGATTCcacctttttttatttcag
aagtGGTATATTTCCAATCACAGCTATTTTTGGACCCAGGGATGTAATAG
CGTTTGAGAATGTATATGCCGAACAGGCCACTGAACACTGAGCCAACTCT
ATAGAGAgatttgatttttgtgaaaaagtttacaaaatcAACGAAAAAGT
GTTCCTCAGAgatacaattttgaaaaaatttctaaccTTAGAGACCTTAG
AGAGATCTTTTCTTGGTttccaaaaaaggaaaaatcccaaccttagagag
acttgaattttttttctaaactccTAGTGATCGTCTGCACATACCCAGAA
ctatttttgcctaaattcCTCTCCCCCGTTTTTCAGTAACTACTATGTTG
TGAACAGTATTAAATCATTTAAGATAATAACCCACTGAGAACTGTAGAAT
CTTTCCAATAAATGTGACATGAAGTCAGAAAACTGGAAACTTCTCAAAAC
TAAAGTTTGGATGGGCTATAACTATCATGACTATAGTTTTGCGTTTTTGt
gaattattaaaaaatattaaatttaagTTTTAGGGTAATTTGAAGGGCTA
GTTTTTGTCTCGTTTGTATATACCCTTTTCAAGccatttttgtagatttt
ctcaattttcCATACATCATCCCGAATCTTATTGTATAATTGAAAACTTT
TgtctttaaattttatttttagtatCAATCTTTGTATGGATTTATTAAAC
ACAAAACTTATAAAAGCGACACCATTTTCACAAGTATTTTTAACGATTAT
CAAGtatagaaaacaatttttaggataaaatataatgtttattgttgttt
ttgtaATGTTTTAATTCTTTTATTCCTTGTTAATGGAAGAAATTTATTCC
ATAATCTTGTTGTAAAAGGTGAATGTATTAAAATAAGCAGGTTATATTGT
AAGAATTCTTTATTTGAAAGACACATATGATTGAAAAAGTTGCGCTAATA
GCTTTT Coding sequence (CDS) from alignment at scaffold_202:1180565..1184920+ >TCONS_00051574 ID=TCONS_00051574|Name=TCONS_00051574|organism=Clytia hemisphaerica|type=CDS|length=4884bp|location=Sequence derived from alignment at scaffold_202:1180565..1184920+ (Clytia hemisphaerica)
GAGGTGATTACGCTGTACCCGACTGAGTGGCCTGCGttcattgaaatttt
ccttGTTCGTCTggaaaactttctttttatagGGGAAGTAcagGTTGAAA
TGGCTGAAGAAGGAAAACCGCAAACAAAAAgacttgaaaatattgaaaat
aatggCTTTGGTCCATTGCCGAAAGCTCGTGGCATGCGTGATACTATCCT
CTTCAGTTTACTAGTCCTTCTTGTGTATTTAAGCAGTGCTGCAGTATACC
GAAATTTTTACCAAGGAAAACGAGCTCTACTTTCACAAGATGTTGGAGAT
GCCTTTGTAATACTTTTTGGAATCTGTCTTGGGGAGTTGTTGCGCTCAAT
TGTGCTTTACGGAGAGGAGAAGAATCACACAGTATCGCGATATTCAAACT
CTCATTGGAGGGCTTTACAGGCTTGTGTTCCATACTCTTGGAAGCAAATT
TGTGTTTTCAAGattatttttttggTTATATCTTTTTGTGGAACTGCTGT
ATACtggatttttgctgaaaaggtgtcGTTCAATGCATTCCATTTGTTAT
CCATAACAGTTTTCAGTGCAATCAATCAAGTGGTTCTGTCCAAAGCTGAA
GTCTCCCATTTGAATGAAACTGAAAACAAACATGTTGCTGATGGCCTTGC
ATGGAGTTATTACTTTGGCTACCTCAAAATCATGTTGCCTGGTATGAAAG
GAATGTTGGCTTTAGCTCAAGGAGATGAGTACAAAATTGATGGCGAAGAT
ATTCGTGATAAATTATCTTCAGAAAAGCTTCACATTGTGATTCCCAAAAA
TTGTTACACCTATGATTCTTTTAAAGAAGTAGATAAAAGAATCACTTTTA
AATGCAGTATGCCACCAATCAAGAAAACCAGAGGAGGAGTTCAAGAGCGT
GTCTACAAGAATactgtttgggaggtaaaactTGAAGATGATGAAGAACC
ACTGTACGTGCTTATGGAATATGCCACACCTGTCCTATCCATGTATGAca
tgaagaaagaagaaagtgCTCACTTCCATGGACAGGATCTTGAAGACCAA
GTTAAAGAATTTACAACCAAACTGCAGAAGATTTTggatgaagatgaaga
atgcAAAAATAAGTATGAAATTGTCTTATGCGGTGATGTCAAATCCCAAA
AACTCAGCGAGATCATGCGCAGAACCATtcaaaaggaaaaggaaaataaa
gaaaaggatAAAAACATATAAGAGGTGATTACGCTGTACCCGACTGAGTG
GCCTGCGttcattgaaattttccttGTTCGTCTggaaaactttcttttta
tagGGGAAGTAcagGTTGAAATGGCTGAAGAAGGAAAACCGCAAACAAAA
AgacttgaaaatattgaaaataatggCTTTGGTCCATTGCCGAAAGCTCG
TGGCATGCGTGATACTATCCTCTTCAGTTTACTAGTCCTTCTTGTGTATT
TAAGCAGTGCTGCAGTATACCGAAATTTTTACCAAGGAAAACGAGCTCTA
CTTTCACAAGATGTTGGAGATGCCTTTGTAATACTTTTTGGAATCTGTCT
TGGGGAGTTGTTGCGCTCAATTGTGCTTTACGGAGAGGAGAAGAATCACA
CAGTATCGCGATATTCAAACTCTCATTGGAGGGCTTTACAGGCTTGTGTT
CCATACTCTTGGAAGCAAATTTGTGTTTTCAAGattatttttttggTTAT
ATCTTTTTGTGGAACTGCTGTATACtggatttttgctgaaaaggtgtcGT
TCAATGCATTCCATTTGTTATCCATAACAGTTTTCAGTGCAATCAATCAA
GTGGTTCTGTCCAAAGCTGAAGTCTCCCATTTGAATGAAACTGAAAACAA
ACATGTTGCTGATGGCCTTGCATGGAGTTATTACTTTGGCTACCTCAAAA
TCATGTTGCCTGGTATGAAAGGAATGTTGGCTTTAGCTCAAGGAGATGAG
TACAAAATTGATGGCGAAGATATTCGTGATAAATTATCTTCAGAAAAGCT
TCACATTGTGATTCCCAAAAATTGTTACACCTATGATTCTTTTAAAGAAG
TAGATAAAAGAATCACTTTTAAATGCAGTATGCCACCAATCAAGAAAACC
AGAGGAGGAGTTCAAGAGCGTGTCTACAAGAATactgtttgggaggtaaa
actTGAAGATGATGAAGAACCACTGTACGTGCTTATGGAATATGCCACAC
CTGTCCTATCCATGTATGAcatgaagaaagaagaaagtgCTCACTTCCAT
GGACAGGATCTTGAAGACCAAGTTAAAGAATTTACAACCAAACTGCAGAA
GATTTTggatgaagatgaagaatgcAAAAATAAGTATGAAATTGTCTTAT
GCGGTGATGTCAAATCCCAAAAACTCAGCGAGATCATGCGCAGAACCATt
caaaaggaaaaggaaaataaagaaaaggatAAAAACATATAAGAGGTGAT
TACGCTGTACCCGACTGAGTGGCCTGCGttcattgaaattttccttGTTC
GTCTggaaaactttctttttatagGGGAAGTAcagGTTGAAATGGCTGAA
GAAGGAAAACCGCAAACAAAAAgacttgaaaatattgaaaataatggCTT
TGGTCCATTGCCGAAAGCTCGTGGCATGCGTGATACTATCCTCTTCAGTT
TACTAGTCCTTCTTGTGTATTTAAGCAGTGCTGCAGTATACCGAAATTTT
TACCAAGGAAAACGAGCTCTACTTTCACAAGATGTTGGAGATGCCTTTGT
AATACTTTTTGGAATCTGTCTTGGGGAGTTGTTGCGCTCAATTGTGCTTT
ACGGAGAGGAGAAGAATCACACAGTATCGCGATATTCAAACTCTCATTGG
AGGGCTTTACAGGCTTGTGTTCCATACTCTTGGAAGCAAATTTGTGTTTT
CAAGattatttttttggTTATATCTTTTTGTGGAACTGCTGTATACtgga
tttttgctgaaaaggtgtcGTTCAATGCATTCCATTTGTTATCCATAACA
GTTTTCAGTGCAATCAATCAAGTGGTTCTGTCCAAAGCTGAAGTCTCCCA
TTTGAATGAAACTGAAAACAAACATGTTGCTGATGGCCTTGCATGGAGTT
ATTACTTTGGCTACCTCAAAATCATGTTGCCTGGTATGAAAGGAATGTTG
GCTTTAGCTCAAGGAGATGAGTACAAAATTGATGGCGAAGATATTCGTGA
TAAATTATCTTCAGAAAAGCTTCACATTGTGATTCCCAAAAATTGTTACA
CCTATGATTCTTTTAAAGAAGTAGATAAAAGAATCACTTTTAAATGCAGT
ATGCCACCAATCAAGAAAACCAGAGGAGGAGTTCAAGAGCGTGTCTACAA
GAATactgtttgggaggtaaaactTGAAGATGATGAAGAACCACTGTACG
TGCTTATGGAATATGCCACACCTGTCCTATCCATGTATGAcatgaagaaa
gaagaaagtgCTCACTTCCATGGACAGGATCTTGAAGACCAAGTTAAAGA
ATTTACAACCAAACTGCAGAAGATTTTggatgaagatgaagaatgcAAAA
ATAAGTATGAAATTGTCTTATGCGGTGATGTCAAATCCCAAAAACTCAGC
GAGATCATGCGCAGAACCATtcaaaaggaaaaggaaaataaagaaaagga
tAAAAACATATAAGAGGTGATTACGCTGTACCCGACTGAGTGGCCTGCGt
tcattgaaattttccttGTTCGTCTggaaaactttctttttatagGGGAA
GTAcagGTTGAAATGGCTGAAGAAGGAAAACCGCAAACAAAAAgacttga
aaatattgaaaataatggCTTTGGTCCATTGCCGAAAGCTCGTGGCATGC
GTGATACTATCCTCTTCAGTTTACTAGTCCTTCTTGTGTATTTAAGCAGT
GCTGCAGTATACCGAAATTTTTACCAAGGAAAACGAGCTCTACTTTCACA
AGATGTTGGAGATGCCTTTGTAATACTTTTTGGAATCTGTCTTGGGGAGT
TGTTGCGCTCAATTGTGCTTTACGGAGAGGAGAAGAATCACACAGTATCG
CGATATTCAAACTCTCATTGGAGGGCTTTACAGGCTTGTGTTCCATACTC
TTGGAAGCAAATTTGTGTTTTCAAGattatttttttggTTATATCTTTTT
GTGGAACTGCTGTATACtggatttttgctgaaaaggtgtcGTTCAATGCA
TTCCATTTGTTATCCATAACAGTTTTCAGTGCAATCAATCAAGTGGTTCT
GTCCAAAGCTGAAGTCTCCCATTTGAATGAAACTGAAAACAAACATGTTG
CTGATGGCCTTGCATGGAGTTATTACTTTGGCTACCTCAAAATCATGTTG
CCTGGTATGAAAGGAATGTTGGCTTTAGCTCAAGGAGATGAGTACAAAAT
TGATGGCGAAGATATTCGTGATAAATTATCTTCAGAAAAGCTTCACATTG
TGATTCCCAAAAATTGTTACACCTATGATTCTTTTAAAGAAGTAGATAAA
AGAATCACTTTTAAATGCAGTATGCCACCAATCAAGAAAACCAGAGGAGG
AGTTCAAGAGCGTGTCTACAAGAATactgtttgggaggtaaaactTGAAG
ATGATGAAGAACCACTGTACGTGCTTATGGAATATGCCACACCTGTCCTA
TCCATGTATGAcatgaagaaagaagaaagtgCTCACTTCCATGGACAGGA
TCTTGAAGACCAAGTTAAAGAATTTACAACCAAACTGCAGAAGATTTTgg
atgaagatgaagaatgcAAAAATAAGTATGAAATTGTCTTATGCGGTGAT
GTCAAATCCCAAAAACTCAGCGAGATCATGCGCAGAACCATtcaaaagga
aaaggaaaataaagaaaaggatAAAAACATATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00051574-exon-scaffold_202-1491911889:1180565..1180658 | TCONS_00051574-exon-scaffold_202-1491911889:1180565..1180658 | Clytia hemisphaerica | exon |
| TCONS_00051574-exon-scaffold_202-1510915933:1180565..1180658 | TCONS_00051574-exon-scaffold_202-1510915933:1180565..1180658 | Clytia hemisphaerica | exon |
| TCONS_00051574-exon-scaffold_202-1575043694:1180565..1180658 | TCONS_00051574-exon-scaffold_202-1575043694:1180565..1180658 | Clytia hemisphaerica | exon |
| TCONS_00051574-exon-scaffold_202-1491911889:1182081..1182398 | TCONS_00051574-exon-scaffold_202-1491911889:1182081..1182398 | Clytia hemisphaerica | exon |
| TCONS_00051574-exon-scaffold_202-1510915933:1182081..1182398 | TCONS_00051574-exon-scaffold_202-1510915933:1182081..1182398 | Clytia hemisphaerica | exon |
| TCONS_00051574-exon-scaffold_202-1575043694:1182081..1182398 | TCONS_00051574-exon-scaffold_202-1575043694:1182081..1182398 | Clytia hemisphaerica | exon |
| TCONS_00051574-exon-scaffold_202-1491911889:1182774..1182824 | TCONS_00051574-exon-scaffold_202-1491911889:1182774..1182824 | Clytia hemisphaerica | exon |
| TCONS_00051574-exon-scaffold_202-1510915933:1182774..1182824 | TCONS_00051574-exon-scaffold_202-1510915933:1182774..1182824 | Clytia hemisphaerica | exon |
| TCONS_00051574-exon-scaffold_202-1575043694:1182774..1182824 | TCONS_00051574-exon-scaffold_202-1575043694:1182774..1182824 | Clytia hemisphaerica | exon |
| TCONS_00051574-exon-scaffold_202-1491911889:1183125..1184920 | TCONS_00051574-exon-scaffold_202-1491911889:1183125..1184920 | Clytia hemisphaerica | exon |
| TCONS_00051574-exon-scaffold_202-1510915933:1183125..1184920 | TCONS_00051574-exon-scaffold_202-1510915933:1183125..1184920 | Clytia hemisphaerica | exon |
| TCONS_00051574-exon-scaffold_202-1575043694:1183125..1184920 | TCONS_00051574-exon-scaffold_202-1575043694:1183125..1184920 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_202 | supercontig | scaffold_202:1180565..1184920 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0032481 | positive regulation of type I interferon production |
| GO:0002218 | activation of innate immune response |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0035438 | cyclic-di-GMP binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0002218 |
activation of innate immune response |
| biological_process |
GO:0032481 |
positive regulation of type I interferon production |
| molecular_function |
GO:0035438 |
cyclic-di-GMP binding |
Blast
BLAST of TCONS_00051574 vs. Swiss-Prot (Human)
Match: STING (Stimulator of interferon genes protein OS=Homo sapiens GN=TMEM173 PE=1 SV=1) HSP 1 Score: 122.865 bits (307), Expect = 7.138e-30 Identity = 76/259 (29.34%), Postives = 131/259 (50.58%), Query Frame = 2
Query: 362 GEEKNHTVSRYSNSHWRALQACV--PYSWKQICVFKIIFL--VISFCGTAVYWIFAEKVSFNAFHLLSITVFSAINQVVLSKAEVSHLNETENKHVADGLAWSYYFGYLKIMLPGMKGMLALAQGDEYKIDGEDIRDKLSSEKLHIVIPKNCYTYDSFKEVDKRITFKCSMPPIKKTRGGVQERVYKNTVWEVKLEDDEEPLYVLMEYATPVLSMYDMKKEESAHFHGQDLEDQVKEFTTKLQKILDEDEECKNKYEIV 1126
EE H SRY S+WR ++AC+ P + + I F + + G W+ A A ++L + L+ AE+S + E N +VA GLAWSYY GYL+++LP ++ A+ Y ++ S++L+I++P +C D+ D I F +P G+++RVY N+++E+ LE+ + ++EYATP+ +++ M + A F +D +Q K F L+ IL + E +N ++
Sbjct: 67 AEELRHIHSRYRGSYWRTVRACLGCPLRRGALLLLSIYFYYSLPNAVGPPFTWMLALLGLSQALNIL-------LGLKGLAPAEISAVCEKGNFNVAHGLAWSYYIGYLRLILPELQ-----ARIRTYNQHYNNLLRGAVSQRLYILLPLDCGVPDNLSMADPNIRFLDKLPQQTGDHAGIKDRVYSNSIYEL-LENGQRAGTCVLEYATPLQTLFAMSQYSQAGFSREDRLEQAKLFCRTLEDILADAPESQNNCRLI 312
The following BLAST results are available for this feature:
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