TCONS_00051557 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00051557
Unique Name	TCONS_00051557
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1954

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at scaffold_202:1066191..1071280+

transcript sequence

>TCONS_00051557 ID=TCONS_00051557|Name=TCONS_00051557|organism=Clytia hemisphaerica|type=transcript|length=1954bp
TGATAACAGTTCAGTGTTTTTGATCACTCACGTTTTGTAATTTTGGCTGA
ATTTTggtttcttgatttttatatTGACTAGTTTTTGTAATTGGCTGGTA
CTGTAGGATGGCTGTAGGATGCTCTTAATTTAAACTCGGTTAATAAAGAT
TACATCAGATTTAAAAGCATTCTCCTCAAGACTCAAGTGCAGCCAAATTT
TccaacaaaacattcgaatactttgatgttttcaatcaGCTCCAAGGTGG
ATCAACGATCACTAACCATGTCGCTAAGCAACCACGATCGCCGGATGAGT
GATCAATCATCCGGTAACAATACGCGAACCTCATCACTCAAACATCAACA
TAACAATCCAAGAGAACTGAAAGTTGAATATTCAGCCGTCAGTCAAAAAG
CAACCGTCAAAAGTACAGAAACGGTCAACGACACTCAAGTCATTTACGTT
TATTGTTCACCACGTTTGAAACATACGTTAATCTTTATAtttcgttttgt
tttgattacgTACTGCGTTGCCGTTCCCGTATTTGTGTATCTTCTACATC
AAAAAAGTTCGGTTAATATtgcgaaaattgaaaagtttgaaactgatttt
caaagacatttacataaaatttcagaaaatgatAAACTAAAGAATGAACA
GTCTGCACCTTCATCTTCAACGTCGACTCGTAAAAGAAGAAACGCTGAAT
TGGCTCAAAAGGAATTCGACAAGTCTTATAAACAACCAGGAATGAAGGat
caagattttcaaaagaagctGAAAGAATTCAACAATACAGTTCAGAAATA
TAGactgaaGCTTTCCGAATTGGAGCCAGCTGAGAAATGGTTACAAGAAA
TCTACATGAAACATATCAGCACCAATTTAGATAGCACTGATTGTAACTGT
AAAAAAGAAACAGATTCCTCTGATGGAAAAGAATGTGCATCGAAAGAATG
CGATTGCTCGAAAGTAAAGCAAGGACCACCAGGACCTCCTGGAAGACAAG
GTGAACAAGGTGATCCTGGAAAAATTGTAAAGGTACCGACGCTGAGAGGT
CCTCAAGGTTTGCAAGGTTCCAGAGGACCGAAAGGTGACCCTGGGGATAT
TGGTCCTCAGGGAAAACCAGGTGCTGATGCAAGCTGTgattccaataaaa
acaacaaagatttgaaaacaactTACATTCGTTGGGGGAGTAAAGAATGT
GGAAAAGATGCCAACAAGATATACTCAGGATACATGGGTGGCGCTTCAAA
CCGAGCCAGTGGCGGTGGTTCCAACTATCTGTGTCTCCCAGAANTACATG
GGTGGCGCTTCAAACCGAGCCAGTGGTGGTGGTTCTAATTATCTGTGTCT
CCCAGAGACACCATCATACTCTAAAGtacaaaaatttaaacaaagtGATG
CGTCTGAAATTGACATTCAAATTGGGAATGATATATTCTGTTCAGTTTGT
GAGAGAATTGGTAAAAGTAGTACTATTATGTATCCAGCATCGAATCTATG
TCCTGAGGGATGGGAGTTAGAATATACAGGAACCCTGGTCACGCAGAAAC
AAACTAAACGAACGGAGTATGTTTGTCTGTCGCAAGAAGTGACTTCAAAG
CTTTGGAGATCGAATCTGGGTATGACAACAGTTTCAGAACAAGCATGTAA
GATATTGAACTGTGGACCGTATGAggcgaaaaagaatttgaattgcGCTG
TGTGCACGCAATAAATTATTTTACGAATGAATGCGTGAATGATGGAAAAC
ATATGTTTTGCACAGAGAAAAACATCGGCCAGAGCTGCAAGATGTTTGGA
AAatttctctttatttttttatattaatgTAATATAGTCAAAGTATAGAT
TTAAGTCAAATTATTTGATTATTTAAGAGAAAAATGTATAAATTAGTAGA
TATTTTAAGGTATTGTCCAAAGAAATTCTTGAACTTTATTATTTAGTATA
AAGC

Run BLAST on NCBI

transcript from alignment at scaffold_202:1066191..1071280+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00051557 ID=TCONS_00051557|Name=TCONS_00051557|organism=Clytia hemisphaerica|type=transcript|length=5090bp|location=Sequence derived from alignment at scaffold_202:1066191..1071280+ (Clytia hemisphaerica)
TGATAACAGTTCAGTGTTTTTGATCACTCACGTTTTGTAATTTTGGCTGA
ATTTTggtttcttgatttttatatTGACTAGTTTTTGTAATTGGCTGGTA
CTGTAGGATGGCTGTAGGATGCTCTTAATTTAAACTCGGTTAATAAAGAT
TACATCAGATTTAAAAGCATTCTCCTCAAGACTCAAGTGCAGCCAAATTT
TccaacaaaacattcgaatgtaatgACTTCTCTTAATCTTTTAAAATCTG
TGTATACTTCTATTTTTCCTTATATATTTAAGACTTTTGTCAATCGACGA
AGCTGACATTTTCAAGGAGCTTATTAATTCCTTTCATTTAGactttgatg
ttttcaatcaGCTCCAAGGTGGATCAACGATCACTAACCATGTCGCTAAG
CAACCACGATCGCCGGATGAGTGATCAATCATCCGGTAACAATACGCGAA
CCTCATCACTCAAACATCAACATAACAATCCAAGAGAACTGAAAGTTGAA
TATTCAGCCGTCAGTCAAAAAGCAACCGTCAAAAGTACAGAAACGGTCAA
CGACACTCAAGTCATTTACGTTTATTGTTCACCACGTTTGAAACATACGT
TAATCTTTATAtttcgttttgttttgattacgTACTGCGTTGCCGTTCCC
GTATTTGTGTATCTTCTACATCAAAAAAGTTCGGTTAATATtgcgaaaat
tgaaaagtttgaaactgattttcaaagacatttacataaaatttcagaaa
atgatAAACTAAAGAATGAACAGTCTGCACCTTCATCTTCAACGTCGACT
CGTAAAAGAAGAAACGCTGAATTGGCTCAAAAGGAATTCGACAAGTCTTA
TAAACAACCAGGAATGAAGGatcaagattttcaaaagaagctGAAAGAAT
TCAACAATACAGTTCAGAAATATAGactgaagtaatttttttgaatttaa
gtGAATTTAAGTGATcaagatttcaaattaaaacgGTTATCATTAACTGT
TACCATTTTAAAATCAGTAAGGAAAATACCCCCTTTATAATGACCCCCCC
TGAGATCAATGTTGTGAAGGTTTGAGCTGTTACAGAGAAGTTGGTTTGCT
TTAAAACATAGATTTTTTAGGGGTACCCCTCCCCTTCTTAACTTTGCTGT
CAATATATTAACTGACAGATTGTAGTAATTTTAAACCTTAGTCACAATTA
TTTGGAATTCTAGTCTTTATTGAGCCTTTATTagccaaattcaatatttt
cttcATTCAGGCTTTCCGAATTGGAGCCAGCTGAGAAATGGTTACAAGAA
ATCTACATGAAACATATCAGCACCAATTTAGATAGCACTGATTGTAACTG
TAAAAAAGGTAAAAGATATTATCACTTAACGAACTTTCAGGCACCTTTAT
ATATTGGACCCTTATTTAACGCCGGTTTTTTATGCCGCTGCCTGATTTTA
AGCTTAGATCTATTATAGCCGTAATTGAACAACGAAAGCTGAAAGCTATT
CTCAATATCATTTGTGAGTTAGCtgttaaaagttttattgaaaacaaCTA
AAATTCTTGCAGTTTAGAAAATGGGTCGAAGAGTGGTTAATTTTCATCTT
ACTAGGAAAAAGATTTAATGATAACACAATATTTTATCCCTTTATTACCA
CCAGGCAATAAATTAAGGCCTGCGCAGATGCATCCAACATTTGATCTAAG
ATTTCGAATTCTTTGTTGGACGAGATGTTGGATGAAAGTCACGAAAAGTT
ggatgaaaagtcatttgcgcaaaaatgtcaaaaaaattttgatccaACAT
GATTACGCAAATACCAAAACATGAaagcaacatgaaagtggcgtCAATCT
CATAAAAATGTTAGATGAAATGTTTGGTAGCGATCAAACTTTATACAATA
CGTTTTCCAACATTATTATTAAAAAGTTGCGATTTTATGACTTGCGCAAA
TGAacccaacatttcatccaacaaatGTTGAATCCGATATTGGATgcatt
tgcgccggcctttaATGTCAACCAGGGTCGATAGTATATTACTTCTGGTC
TGTCCAGCATCAGTTAATTATATCAACCATGCAcgttgaaatgaaaatat
tgattgTTCACAGCAAATTTTATCATGCATTAATCTCTGCTTTCACGTTT
CAGAAACAGATTCCTCTGATGGAAAAGAATGTGCATCGAAAGGTACTGAG
AATTATTTCCTTATTTCCGAGAACATCCTGTTTCATTCATAAGGACCAGC
TTATGCTGGCGAAGATATTCTTCTTATGGAGCAAAAATCACccaataaat
ttaaaattgtatATTGTCTCCTACAACCTATCCTTCATTCCAGGACATAA
TTGTAGAAACACATGCTTGTAAAATCTCCTTCCACCTAAAGGGGACAGAG
TAAAAGTGTATTTTTGAGGGGTTGCTTCATTTTCCCCGATTGTAGTTTGT
TTCATGGGCATATATTTTAACCTCATTTTATAGAATGCGATTGCTCGAAA
GTAAAGCAAGGACCACCAGGACCTCCTGGAAGACAAGGTGAACAAGGTGA
TCCTGGAAAAATTGTAAAGgtaatgatttttgaaattattgaaatCATTC
CTTTTCTGTTTTGAAGTGACGCTTCTCATACGGTACCGAATATCTTACCA
CATCTACATCTTATTTTATGCAACGAGCTTCCCTATCCGTTTTACTGGGG
ACTACCTATAATGGAGCGTAACTTCAACGTTCGTAGCCGAAAAAGCCTAG
AGAAGCTCAGTGCTAAAGATGTCTGTATATATTTGACATTTAGTCAGACG
GAATTGAATGACATTCAAATCACAAGTGTAATCGTCCGCCATACCacgta
ttcaatttttttaaacaggtgtcaagtttttgtttgaactattcttcatt
tttactgttttttaaatatttcctcagGTACCGACGCTGAGAGGTCCTCA
AGGTTTGCAAGGTTCCAGAGGACCGAAAGGTGACCCTGGGGATATTGGTC
CTCAGGGAAAACCAGGTAAGAAGCCAACCTTCCTCAAATTAAGGAATTTA
TGATCATTGTTGCCAAAACCATATCATATTCATTTTCCCATATTATGTCT
TCCGAAAGGTGAAACAAGAAAGATATGTTAAAATGTAACCTGAAGTTCCT
GGCACTGTTTACTTTGTTTCTAACGACCCTGCCGATGCACCGGACTGATT
CGTGTGTGGTCCGATATTTatattgtccggtggtaaaatgTTTTCCGTGT
CCGGTGCTTCCGTAACTCCGGTGTGTTGGTTGCTCCTGTTCAGCCTTTAC
CTTtaaggctggtctccactttcgcgtgaAATAGGCGACAGTTTTTGCGA
GAATAAAAGATTACGTTAtgaaaaagtttcgcgcgaacaaaaaaaaagtt
gaaggatgttctacttttttcatccgttacgtcaatttcgaccaatagaa
ttgcttcatttttgaaCCGACCAATggccttacaaaaacgtcaaaaagtt
ttcactcgtgtcgcgcgaaagtggagatcGGCCTTTATACTACTCGTTAA
TTTATGCTTCAATGTATGTTCATAGGTGCTGATGCAAGCTGTgattccaa
taaaaacaacaaagatttgaaaacaactTACATTCGTTGGGGGAGTAAAG
AATGTGGAAAAGATGCCAACAAGATATACTCAGGTTTGTTGACAAAAACC
TTCCTTTTAAAAGATATTCCATATTAATATTGTTGTATACGTTTTTAATT
AATTGtatcttatcggggaaaaaagaCCAGGTTTGATTAcattatcggcc
ctttttacgccggcccttattgacgttatttttgggctcgtggcgtaata
agggccggtgttaaattagggccggcgtaaaaagggccgataaggtagtc
gGATGAAAACTTGGACGGGGAAAATTCGTCAATTAGAgacattttcgtca
ctttcatCCGCCATCAAATTCTGCTTTTGATACTTCTGATTACTTTTGTA
CAGTTGTTTAACTTTGTCAAGACCAACTCCGAAGTTTGACTTGGCCGACC
AAACGGCCTTAATTTTTATGCAGTTAAAGAGTCCCTAAGGCGCCAGGGAA
GTCAACgaaggctctaataagcataGAAAGCATTAGCAtagaaaaagtga
attttaattAAGAAAGAGGCATCATTTGGAGAGGTAAACACACGTATGAT
TTCATTCACTAAAATGTTTCGTATACTGAGATAGTCAATTAATCTTTAGc
gagttaaaccatagtgtttttttacaagattcTGACATCGtggtaaaaaa
ctaaaaattgtttatatcgacgaaatttttaaatttttaaatttttaaaa
cgttttattCATAGGATACATGGGTGGCGCTTCAAACCGAGCCAGTGGCG
GTGGTTCCAACTATCTGTGTCTCCCAGAANTACATGGGTGGCGCTTCAAA
CCGAGCCAGTGGTGGTGGTTCTAATTATCTGTGTCTCCCAGAGACACCAT
CATACTCTAAAGtacaaaaatttaaacaaagtGATGCGTCTGAAATTGAC
ATTCAAATTGGGAATGATATATTCTGTTCAGTTTGTGAGAGAATTGGTAA
AAGTAGTACTATTATGTATCCAGCATCGAATCTATGTCCTGAGGGATGGG
AGTTAGAATATACAGGAACCCTGGTCACGCAGAAACAAACTAAACGAACG
GAGTATGTTTGTCTGTCGCAAGAAGTGACTTCAAAGCTTTGGAGATCGAA
TCTGGGTATGACAACAGTTTCAGAACAAGCATGTAAGATATTGAACTGTG
GACCGTATGAggcgaaaaagaatttgaattgcGCTGTGTGCACGCAATAA
ATTATTTTACGAATGAATGCGTGAATGATGGAAAACATATGTTTTGCACA
GAGAAAAACATCGGCCAGAGCTGCAAGATGTTTGGAAAatttctctttat
ttttttatattaatgTAATATAGTCAAAGTATAGATTTAAGTCAAATTAT
TTGATTATTTAAGAGAAAAATGTATAAATTAGTAGATATTTTAAGGTATT
GTCCAAAGAAATTCTTGAACTTTATTATTTAGTATAAAGC

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_032661	XLOC_032661	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_202	supercontig	scaffold_202:1066191..1071280 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.364331	0	0	0.2671	0.00015345	0.65184	2.60641	2.2087	0	0	0	0	3.28391	3.59202	0.519256	0	2.62044	0.296186	7.10319	6.85067	0.714881	0	1.65091	0.407761	2.08613	2.42939	0.277957	1.07602	0.000446423	1.37524

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00051557 vs. Swiss-Prot (Human)

BLAST of TCONS_00051557 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

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TCONS_00051557 (transcript) - C. hemisphaerica