TCONS_00051555 (transcript) - C. hemisphaerica

Overview
NameTCONS_00051555
Unique NameTCONS_00051555
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1738

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00051555 ID=TCONS_00051555|Name=TCONS_00051555|organism=Clytia hemisphaerica|type=transcript|length=1738bp
TTAAAACAGactttgatgttttcaatcaGCTCCAAGGTGGATCAACGATC
ACTAACCATGTCGCTAAGCAACCACGATCGCCGGATGAGTGATCAATCAT
CCGGTAACAATACGCGAACCTCATCACTCAAACATCAACATAACAATCCA
AGAGAACTGAAAGTTGAATATTCAGCCGTCAGTCAAAAAGCAACCGTCAA
AAGTACAGAAACGGTCAACGACACTCAAGTCATTTACGTTTATTGTTCAC
CACGTTTGAAACATACGTTAATCTTTATAtttcgttttgttttgattacg
TACTGCGTTGCCGTTCCCGTATTTGTGTATCTTCTACATCAAAAAAGTTC
GGTTAATATtgcgaaaattgaaaagtttgaaactgattttcaaagacatt
tacataaaatttcagaaaatgatAAACTAAAGAATGAACAGTCTGCACCT
TCATCTTCAACGTCGACTCGTAAAAGAAGAAACGCTGAATTGGCTCAAAA
GGAATTCGACAAGTCTTATAAACAACCAGGAATGAAGGatcaagattttc
aaaagaagctGAAAGAATTCAACAATACAGTTCAGAAATATAGactgaaG
CTTTCCGAATTGGAGCCAGCTGAGAAATGGTTACAAGAAATCTACATGAA
ACATATCAGCACCAATTTAGATAGCACTGATTGTAACTGTAAAAAAGATT
CCTCTGATGGAAAAGAATGTGCATCGAAAGAATGCGATTGCTCGAAAGTA
AAGCAAGGACCACCAGGACCTCCTGGAAGACAAGGTGAACAAGGTGATCC
TGGAAAAATTGTAAAGGTACCGACGCTGAGAGGTCCTCAAGGTTTGCAAG
GTTCCAGAGGACCGAAAGGTGACCCTGGGGATATTGGTCCTCAGGGAAAA
CCAGGTGCTGATGCAAGCTGTgattccaataaaaacaacaaagatttgaa
aacaactTACATTCGTTGGGGGAGTAAAGAATGTGGAAAAGATGCCAACA
AGATATACTCAGGATACATGGGTGGCGCTTCAAACCGAGCCAGTGGCGGT
GGTTCCAACTATCTGTGTCTCCCAGAANTACATGGGTGGCGCTTCAAACC
GAGCCAGTGGTGGTGGTTCTAATTATCTGTGTCTCCCAGAGACACCATCA
TACTCTAAAGtacaaaaatttaaacaaagtGATGCGTCTGAAATTGACAT
TCAAATTGGGAATGATATATTCTGTTCAGTTTGTGAGAGAATTGGTAAAA
GTAGTACTATTATGTATCCAGCATCGAATCTATGTCCTGAGGGATGGGAG
TTAGAATATACAGGAACCCTGGTCACGCAGAAACAAACTAAACGAACGGA
GTATGTTTGTCTGTCGCAAGAAGTGACTTCAAAGCTTTGGAGATCGAATC
TGGGTATGACAACAGTTTCAGAACAAGCATGTAAGATATTGAACTGTGGA
CCGTATGAggcgaaaaagaatttgaattgcGCTGTGTGCACGCAATAAAT
TATTTTACGAATGAATGCGTGAATGATGGAAAACATATGTTTTGCACAGA
GAAAAACATCGGCCAGAGCTGCAAGATGTTTGGAAAatttctctttattt
ttttatattaatgTAATATAGTCAAAGTATAGATTTAAGTCAAATTATTT
GATTATTTAAGAGAAAAATGTATAAATTAGTAGATATTTTAAGGTATTGT
CCAAAGAAATTCTTGAACTTTATTATTTAGTATAAAGC
Run BLAST on NCBI

transcript from alignment at scaffold_202:1064664..1071280+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00051555 ID=TCONS_00051555|Name=TCONS_00051555|organism=Clytia hemisphaerica|type=transcript|length=6617bp|location=Sequence derived from alignment at scaffold_202:1064664..1071280+ (Clytia hemisphaerica)
TTAAAACAGGTATGTTTTAATGCCTTATGTCgtaaaagaaattatttatA
AGCGGTGTAAATTTCTTGCTCATTGTTAGCAATTTGTGCCCTGTGTAAGA
GGTTTGGAGATTCAACTATGACTTATACCAACTAACAAAAGTATTCAAAG
ATCTTCTtaagaaaatttagaatttacaaatatcaatcaaatttttaaag
TGGTGTAAAAAACTGTTATCTTGAAAGTTAGGCCACGGATTTAATGACAT
TGGAAAGCTATTTCTATGCTATTCCCAAAAGAATCAGGGCCATGCCCGTT
TTATGGGGGGTGGCACTCATGTTGTGGCGACCtttatttaataatttaat
GGTACAATTTTCAGTTTGTGTAATGTAACGGTCAGGCTGTGTACTGCAAA
TATCGTAATGAGAGAAAGTGCaatgtaagggtccgattttgagacccaaa
attttgtctgtACATACGGTAGTTTTCAGGTAGTGCGCCCCTTAATGATC
AGATACTATAGCCAATATAGTTTTGGCCTTGGTATTTTGGTCTCTTTGGT
CGAAGGGTTAAAAGTCTTGCCAATGAATAGCCAGAGAAATGATGGATTCA
ATAATTTACATATTGTATATAAAAAACTCATGCACTTTCAGACAGTTGCA
TCATAGTAGATGAAGAATTGCCTTTTGTCTGATGTTCCGAGCAAGGCGTC
GTACAGAGCAGTCAAATATTAACACAAACTGGAATAATGTCCCTTTATGC
CCCTTTTTGTTCTCCTGTCGAGTGAATTCCTTAAATACttcatttagaaa
tttacaatcaaaaatgttcatttcccttaataatttttgatagaattccT
TTATTAAATTTGCTTCCCAAAACGTTATAAATTATTCAACTCCAAGTTAA
CTTTTTACCAAACTttgattcaaaaactttctccCATATTATGAGAAACA
ATGAAAGAAATAGACAGTTTATCTGTAAAAACAGTGGGGGAGCAAACTTT
GAATATTTCTTGTGGCTAAACTTGGAAACTGAGGTTTTTAAAGGACTTTT
TAAACATCTGGGTATTTATTTCATTCTGTCATAATCTCACGAGGATGTTC
AGTGCGGTACCCAACTTTCACCGATTTTTTCGTTCAATATGGTTGCATAT
GACGAGATGGTTAGTCTCGAATTTTCGTTTAACTTTTAATTTAACAATGT
TCTCAAAACTATGATTGTTCGACCGGTGTCATAGTTCAGGAATGAACTAA
AAAACTTTCTTGTATTTTCTAGCGTTCGGCAGTATGAGAATCCGTTTTTT
AACATAAATCATACTCTTTTTTTCGAATACACTTTGAGTCGATATAAACA
AGACTAAAAGTTAAACTTTCAATTGTCACAAGAGGTGGAGTAACCTTTTA
AATGCATTTCAGTAAACTTTTCTATAGTCTTAAAATAGAGGGTTGGATTT
CATTTGATTATTAGGTTAATCACATTTTGTCTAGTAATTGATAGCAATGG
GTTAATTAATCAAAAGAAGTTAAGCGATGATAACAGTTCAGTGTTTTTGA
TCACTCACGTTTTGTAATTTTGGCTGAATTTTggtttcttgatttttata
tTGACTAGTTTTTGTAATTGGCTGGTACTGTAGGATGGCTGTAGGATGCT
CTTAATTTAAACTCGGTTAATAAAGATTACATCAGATTTAAAAGCATTCT
CCTCAAGACTCAAGTGCAGCCAAATTTTccaacaaaacattcgaatgtaa
tgACTTCTCTTAATCTTTTAAAATCTGTGTATACTTCTATTTTTCCTTAT
ATATTTAAGACTTTTGTCAATCGACGAAGCTGACATTTTCAAGGAGCTTA
TTAATTCCTTTCATTTAGactttgatgttttcaatcaGCTCCAAGGTGGA
TCAACGATCACTAACCATGTCGCTAAGCAACCACGATCGCCGGATGAGTG
ATCAATCATCCGGTAACAATACGCGAACCTCATCACTCAAACATCAACAT
AACAATCCAAGAGAACTGAAAGTTGAATATTCAGCCGTCAGTCAAAAAGC
AACCGTCAAAAGTACAGAAACGGTCAACGACACTCAAGTCATTTACGTTT
ATTGTTCACCACGTTTGAAACATACGTTAATCTTTATAtttcgttttgtt
ttgattacgTACTGCGTTGCCGTTCCCGTATTTGTGTATCTTCTACATCA
AAAAAGTTCGGTTAATATtgcgaaaattgaaaagtttgaaactgattttc
aaagacatttacataaaatttcagaaaatgatAAACTAAAGAATGAACAG
TCTGCACCTTCATCTTCAACGTCGACTCGTAAAAGAAGAAACGCTGAATT
GGCTCAAAAGGAATTCGACAAGTCTTATAAACAACCAGGAATGAAGGatc
aagattttcaaaagaagctGAAAGAATTCAACAATACAGTTCAGAAATAT
AGactgaagtaatttttttgaatttaagtGAATTTAAGTGATcaagattt
caaattaaaacgGTTATCATTAACTGTTACCATTTTAAAATCAGTAAGGA
AAATACCCCCTTTATAATGACCCCCCCTGAGATCAATGTTGTGAAGGTTT
GAGCTGTTACAGAGAAGTTGGTTTGCTTTAAAACATAGATTTTTTAGGGG
TACCCCTCCCCTTCTTAACTTTGCTGTCAATATATTAACTGACAGATTGT
AGTAATTTTAAACCTTAGTCACAATTATTTGGAATTCTAGTCTTTATTGA
GCCTTTATTagccaaattcaatattttcttcATTCAGGCTTTCCGAATTG
GAGCCAGCTGAGAAATGGTTACAAGAAATCTACATGAAACATATCAGCAC
CAATTTAGATAGCACTGATTGTAACTGTAAAAAAGGTAAAAGATATTATC
ACTTAACGAACTTTCAGGCACCTTTATATATTGGACCCTTATTTAACGCC
GGTTTTTTATGCCGCTGCCTGATTTTAAGCTTAGATCTATTATAGCCGTA
ATTGAACAACGAAAGCTGAAAGCTATTCTCAATATCATTTGTGAGTTAGC
tgttaaaagttttattgaaaacaaCTAAAATTCTTGCAGTTTAGAAAATG
GGTCGAAGAGTGGTTAATTTTCATCTTACTAGGAAAAAGATTTAATGATA
ACACAATATTTTATCCCTTTATTACCACCAGGCAATAAATTAAGGCCTGC
GCAGATGCATCCAACATTTGATCTAAGATTTCGAATTCTTTGTTGGACGA
GATGTTGGATGAAAGTCACGAAAAGTTggatgaaaagtcatttgcgcaaa
aatgtcaaaaaaattttgatccaACATGATTACGCAAATACCAAAACATG
AaagcaacatgaaagtggcgtCAATCTCATAAAAATGTTAGATGAAATGT
TTGGTAGCGATCAAACTTTATACAATACGTTTTCCAACATTATTATTAAA
AAGTTGCGATTTTATGACTTGCGCAAATGAacccaacatttcatccaaca
aatGTTGAATCCGATATTGGATgcatttgcgccggcctttaATGTCAACC
AGGGTCGATAGTATATTACTTCTGGTCTGTCCAGCATCAGTTAATTATAT
CAACCATGCAcgttgaaatgaaaatattgattgTTCACAGCAAATTTTAT
CATGCATTAATCTCTGCTTTCACGTTTCAGAAACAGATTCCTCTGATGGA
AAAGAATGTGCATCGAAAGGTACTGAGAATTATTTCCTTATTTCCGAGAA
CATCCTGTTTCATTCATAAGGACCAGCTTATGCTGGCGAAGATATTCTTC
TTATGGAGCAAAAATCACccaataaatttaaaattgtatATTGTCTCCTA
CAACCTATCCTTCATTCCAGGACATAATTGTAGAAACACATGCTTGTAAA
ATCTCCTTCCACCTAAAGGGGACAGAGTAAAAGTGTATTTTTGAGGGGTT
GCTTCATTTTCCCCGATTGTAGTTTGTTTCATGGGCATATATTTTAACCT
CATTTTATAGAATGCGATTGCTCGAAAGTAAAGCAAGGACCACCAGGACC
TCCTGGAAGACAAGGTGAACAAGGTGATCCTGGAAAAATTGTAAAGgtaa
tgatttttgaaattattgaaatCATTCCTTTTCTGTTTTGAAGTGACGCT
TCTCATACGGTACCGAATATCTTACCACATCTACATCTTATTTTATGCAA
CGAGCTTCCCTATCCGTTTTACTGGGGACTACCTATAATGGAGCGTAACT
TCAACGTTCGTAGCCGAAAAAGCCTAGAGAAGCTCAGTGCTAAAGATGTC
TGTATATATTTGACATTTAGTCAGACGGAATTGAATGACATTCAAATCAC
AAGTGTAATCGTCCGCCATACCacgtattcaatttttttaaacaggtgtc
aagtttttgtttgaactattcttcatttttactgttttttaaatatttcc
tcagGTACCGACGCTGAGAGGTCCTCAAGGTTTGCAAGGTTCCAGAGGAC
CGAAAGGTGACCCTGGGGATATTGGTCCTCAGGGAAAACCAGGTAAGAAG
CCAACCTTCCTCAAATTAAGGAATTTATGATCATTGTTGCCAAAACCATA
TCATATTCATTTTCCCATATTATGTCTTCCGAAAGGTGAAACAAGAAAGA
TATGTTAAAATGTAACCTGAAGTTCCTGGCACTGTTTACTTTGTTTCTAA
CGACCCTGCCGATGCACCGGACTGATTCGTGTGTGGTCCGATATTTatat
tgtccggtggtaaaatgTTTTCCGTGTCCGGTGCTTCCGTAACTCCGGTG
TGTTGGTTGCTCCTGTTCAGCCTTTACCTTtaaggctggtctccactttc
gcgtgaAATAGGCGACAGTTTTTGCGAGAATAAAAGATTACGTTAtgaaa
aagtttcgcgcgaacaaaaaaaaagttgaaggatgttctacttttttcat
ccgttacgtcaatttcgaccaatagaattgcttcatttttgaaCCGACCA
ATggccttacaaaaacgtcaaaaagttttcactcgtgtcgcgcgaaagtg
gagatcGGCCTTTATACTACTCGTTAATTTATGCTTCAATGTATGTTCAT
AGGTGCTGATGCAAGCTGTgattccaataaaaacaacaaagatttgaaaa
caactTACATTCGTTGGGGGAGTAAAGAATGTGGAAAAGATGCCAACAAG
ATATACTCAGGTTTGTTGACAAAAACCTTCCTTTTAAAAGATATTCCATA
TTAATATTGTTGTATACGTTTTTAATTAATTGtatcttatcggggaaaaa
agaCCAGGTTTGATTAcattatcggccctttttacgccggcccttattga
cgttatttttgggctcgtggcgtaataagggccggtgttaaattagggcc
ggcgtaaaaagggccgataaggtagtcgGATGAAAACTTGGACGGGGAAA
ATTCGTCAATTAGAgacattttcgtcactttcatCCGCCATCAAATTCTG
CTTTTGATACTTCTGATTACTTTTGTACAGTTGTTTAACTTTGTCAAGAC
CAACTCCGAAGTTTGACTTGGCCGACCAAACGGCCTTAATTTTTATGCAG
TTAAAGAGTCCCTAAGGCGCCAGGGAAGTCAACgaaggctctaataagca
taGAAAGCATTAGCAtagaaaaagtgaattttaattAAGAAAGAGGCATC
ATTTGGAGAGGTAAACACACGTATGATTTCATTCACTAAAATGTTTCGTA
TACTGAGATAGTCAATTAATCTTTAGcgagttaaaccatagtgttttttt
acaagattcTGACATCGtggtaaaaaactaaaaattgtttatatcgacga
aatttttaaatttttaaatttttaaaacgttttattCATAGGATACATGG
GTGGCGCTTCAAACCGAGCCAGTGGCGGTGGTTCCAACTATCTGTGTCTC
CCAGAANTACATGGGTGGCGCTTCAAACCGAGCCAGTGGTGGTGGTTCTA
ATTATCTGTGTCTCCCAGAGACACCATCATACTCTAAAGtacaaaaattt
aaacaaagtGATGCGTCTGAAATTGACATTCAAATTGGGAATGATATATT
CTGTTCAGTTTGTGAGAGAATTGGTAAAAGTAGTACTATTATGTATCCAG
CATCGAATCTATGTCCTGAGGGATGGGAGTTAGAATATACAGGAACCCTG
GTCACGCAGAAACAAACTAAACGAACGGAGTATGTTTGTCTGTCGCAAGA
AGTGACTTCAAAGCTTTGGAGATCGAATCTGGGTATGACAACAGTTTCAG
AACAAGCATGTAAGATATTGAACTGTGGACCGTATGAggcgaaaaagaat
ttgaattgcGCTGTGTGCACGCAATAAATTATTTTACGAATGAATGCGTG
AATGATGGAAAACATATGTTTTGCACAGAGAAAAACATCGGCCAGAGCTG
CAAGATGTTTGGAAAatttctctttatttttttatattaatgTAATATAG
TCAAAGTATAGATTTAAGTCAAATTATTTGATTATTTAAGAGAAAAATGT
ATAAATTAGTAGATATTTTAAGGTATTGTCCAAAGAAATTCTTGAACTTT
ATTATTTAGTATAAAGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032661XLOC_032661Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051555-exon-scaffold_202-1491911889:1064664..1064672TCONS_00051555-exon-scaffold_202-1491911889:1064664..1064672Clytia hemisphaericaexon
TCONS_00051555-exon-scaffold_202-1510915933:1064664..1064672TCONS_00051555-exon-scaffold_202-1510915933:1064664..1064672Clytia hemisphaericaexon
TCONS_00051555-exon-scaffold_202-1575043694:1064664..1064672TCONS_00051555-exon-scaffold_202-1575043694:1064664..1064672Clytia hemisphaericaexon
TCONS_00051555-exon-scaffold_202-1491911889:1066532..1067121TCONS_00051555-exon-scaffold_202-1491911889:1066532..1067121Clytia hemisphaericaexon
TCONS_00051555-exon-scaffold_202-1510915933:1066532..1067121TCONS_00051555-exon-scaffold_202-1510915933:1066532..1067121Clytia hemisphaericaexon
TCONS_00051555-exon-scaffold_202-1575043694:1066532..1067121TCONS_00051555-exon-scaffold_202-1575043694:1066532..1067121Clytia hemisphaericaexon
TCONS_00051555-exon-scaffold_202-1491911889:1067451..1067548TCONS_00051555-exon-scaffold_202-1491911889:1067451..1067548Clytia hemisphaericaexon
TCONS_00051555-exon-scaffold_202-1510915933:1067451..1067548TCONS_00051555-exon-scaffold_202-1510915933:1067451..1067548Clytia hemisphaericaexon
TCONS_00051555-exon-scaffold_202-1575043694:1067451..1067548TCONS_00051555-exon-scaffold_202-1575043694:1067451..1067548Clytia hemisphaericaexon
TCONS_00051555-exon-scaffold_202-1491911889:1068350..1068382TCONS_00051555-exon-scaffold_202-1491911889:1068350..1068382Clytia hemisphaericaexon
TCONS_00051555-exon-scaffold_202-1510915933:1068350..1068382TCONS_00051555-exon-scaffold_202-1510915933:1068350..1068382Clytia hemisphaericaexon
TCONS_00051555-exon-scaffold_202-1575043694:1068350..1068382TCONS_00051555-exon-scaffold_202-1575043694:1068350..1068382Clytia hemisphaericaexon
TCONS_00051555-exon-scaffold_202-1491911889:1068674..1068759TCONS_00051555-exon-scaffold_202-1491911889:1068674..1068759Clytia hemisphaericaexon
TCONS_00051555-exon-scaffold_202-1510915933:1068674..1068759TCONS_00051555-exon-scaffold_202-1510915933:1068674..1068759Clytia hemisphaericaexon
TCONS_00051555-exon-scaffold_202-1575043694:1068674..1068759TCONS_00051555-exon-scaffold_202-1575043694:1068674..1068759Clytia hemisphaericaexon
TCONS_00051555-exon-scaffold_202-1491911889:1069118..1069205TCONS_00051555-exon-scaffold_202-1491911889:1069118..1069205Clytia hemisphaericaexon
TCONS_00051555-exon-scaffold_202-1510915933:1069118..1069205TCONS_00051555-exon-scaffold_202-1510915933:1069118..1069205Clytia hemisphaericaexon
TCONS_00051555-exon-scaffold_202-1575043694:1069118..1069205TCONS_00051555-exon-scaffold_202-1575043694:1069118..1069205Clytia hemisphaericaexon
TCONS_00051555-exon-scaffold_202-1491911889:1069766..1069873TCONS_00051555-exon-scaffold_202-1491911889:1069766..1069873Clytia hemisphaericaexon
TCONS_00051555-exon-scaffold_202-1510915933:1069766..1069873TCONS_00051555-exon-scaffold_202-1510915933:1069766..1069873Clytia hemisphaericaexon
TCONS_00051555-exon-scaffold_202-1575043694:1069766..1069873TCONS_00051555-exon-scaffold_202-1575043694:1069766..1069873Clytia hemisphaericaexon
TCONS_00051555-exon-scaffold_202-1491911889:1070555..1071280TCONS_00051555-exon-scaffold_202-1491911889:1070555..1071280Clytia hemisphaericaexon
TCONS_00051555-exon-scaffold_202-1510915933:1070555..1071280TCONS_00051555-exon-scaffold_202-1510915933:1070555..1071280Clytia hemisphaericaexon
TCONS_00051555-exon-scaffold_202-1575043694:1070555..1071280TCONS_00051555-exon-scaffold_202-1575043694:1070555..1071280Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_202supercontigscaffold_202:1064664..1071280 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	9.52832e-10	0	0	0	0	0	0	0	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00051555 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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