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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00051711 ID=TCONS_00051711|Name=TCONS_00051711|organism=Clytia hemisphaerica|type=transcript|length=900bp
CCGACGTGGCCCATCAATGCCGTGCCAAAAATGTTATCTCCATTATACGT
TAAATCTGCATCTCCCGCCCCTCGTGTAGATCAGTCTTtaaaaaatggcg
gatgaaccAGCATGGGAAATTGATTGGGAGCTCAAGGAAGCACTGAAACG
ATATGTTGAACAAAATCTTAAACGAGAAGAGATTGTGGATTTTGTGAAAA
GAGACTTCCCTGATTATCAGTGGAGTGTTAGAACATTAGCCAGAAGgcta
gaaaaatttgaaatcaggTATGTTGATCATCATATTGACTTAGAGACAGT
CAAGGAAGCTATTCAAAGAGAGTTGCAGGGTCCTGGAAAAAATCTGGGAT
ACAGGGCTATGCATTTGAAACTTAGAACAGAACATCACTTGCTTGTTCCT
CGGAAACTTGTATCAGATGTCATGTATGATTTAGACCCAGAGGGGGTCCA
AGCTCGTGGATTGATTAGAAAGCAGAAGAAACAGAAACAGCCATATTTTT
CTCATGGTCCAGGTTGGACTTATTCTCTAGATGGGCATGACAAGCTAATG
GGGTAtcagaattccacttttccaatTGCCATTTATGGCTGTCTAGACAC
ATTCTCTAGGAAGattattttcttaaaagtttGGACTTCTAACTCTAATC
CAAAGATAATTGGGAAATTTTACACTGACTTTCTTTTGGAATCTGGGAGA
ATTCCTAGATACCTAACGCTTGACAAAGGTACAGAAACTGGAACCATGGG
AACAATTCATGCCTATCTTATTGACaagtttggaaattttgaagacCCTG
TGAATGCTGTGTTGGTTGGACCCTCAACATCAAATAAAATAGAACGATGG
TGGAAGGAGCTCCACGAAAGGATGGAAAAATTTCTTAAAGAGCAATTGAG Run BLAST on NCBI protein sequence of TCONS_00051711-protein >TCONS_00051711-protein ID=TCONS_00051711-protein|Name=TCONS_00051711-protein|organism=Clytia hemisphaerica|type=polypeptide|length=268bp
MADEPAWEIDWELKEALKRYVEQNLKREEIVDFVKRDFPDYQWSVRTLAR
RLEKFEIRYVDHHIDLETVKEAIQRELQGPGKNLGYRAMHLKLRTEHHLL
VPRKLVSDVMYDLDPEGVQARGLIRKQKKQKQPYFSHGPGWTYSLDGHDK
LMGYQNSTFPIAIYGCLDTFSRKIIFLKVWTSNSNPKIIGKFYTDFLLES
GRIPRYLTLDKGTETGTMGTIHAYLIDKFGNFEDPVNAVLVGPSTSNKIE
RWWKELHERMEKFLKEQL Run BLAST on NCBI transcript from alignment at scaffold_202:735158..736057 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00051711 ID=TCONS_00051711|Name=TCONS_00051711|organism=Clytia hemisphaerica|type=transcript|length=900bp|location=Sequence derived from alignment at scaffold_202:735158..736057 (Clytia hemisphaerica)
CTCAATTGCTCTTTAAGAAATTTTTCCATCCTTTCGTGGAGCTCCTTCCA
CCATCGTTCTATTTTATTTGATGTTGAGGGTCCAACCAACACAGCATTCA
CAGGgtcttcaaaatttccaaacttGTCAATAAGATAGGCATGAATTGTT
CCCATGGTTCCAGTTTCTGTACCTTTGTCAAGCGTTAGGTATCTAGGAAT
TCTCCCAGATTCCAAAAGAAAGTCAGTGTAAAATTTCCCAATTATCTTTG
GATTAGAGTTAGAAGTCCaaacttttaagaaaataatCTTCCTAGAGAAT
GTGTCTAGACAGCCATAAATGGCAattggaaaagtggaattctgaTACCC
CATTAGCTTGTCATGCCCATCTAGAGAATAAGTCCAACCTGGACCATGAG
AAAAATATGGCTGTTTCTGTTTCTTCTGCTTTCTAATCAATCCACGAGCT
TGGACCCCCTCTGGGTCTAAATCATACATGACATCTGATACAAGTTTCCG
AGGAACAAGCAAGTGATGTTCTGTTCTAAGTTTCAAATGCATAGCCCTGT
ATCCCAGATTTTTTCCAGGACCCTGCAACTCTCTTTGAATAGCTTCCTTG
ACTGTCTCTAAGTCAATATGATGATCAACATAcctgatttcaaatttttc
tagcCTTCTGGCTAATGTTCTAACACTCCACTGATAATCAGGGAAGTCTC
TTTTCACAAAATCCACAATCTCTTCTCGTTTAAGATTTTGTTCAACATAT
CGTTTCAGTGCTTCCTTGAGCTCCCAATCAATTTCCCATGCTggttcatc
cgccattttttaAAGACTGATCTACACGAGGGGCGGGAGATGCAGATTTA
ACGTATAATGGAGATAACATTTTTGGCACGGCATTGATGGGCCACGTCGG
Coding sequence (CDS) from alignment at scaffold_202:735158..736057 >TCONS_00051711 ID=TCONS_00051711|Name=TCONS_00051711|organism=Clytia hemisphaerica|type=CDS|length=804bp|location=Sequence derived from alignment at scaffold_202:735158..736057 (Clytia hemisphaerica)
CAATTGCTCTTTAAGAAATTTTTCCATCCTTTCGTGGAGCTCCTTCCACC
ATCGTTCTATTTTATTTGATGTTGAGGGTCCAACCAACACAGCATTCACA
GGgtcttcaaaatttccaaacttGTCAATAAGATAGGCATGAATTGTTCC
CATGGTTCCAGTTTCTGTACCTTTGTCAAGCGTTAGGTATCTAGGAATTC
TCCCAGATTCCAAAAGAAAGTCAGTGTAAAATTTCCCAATTATCTTTGGA
TTAGAGTTAGAAGTCCaaacttttaagaaaataatCTTCCTAGAGAATGT
GTCTAGACAGCCATAAATGGCAattggaaaagtggaattctgaTACCCCA
TTAGCTTGTCATGCCCATCTAGAGAATAAGTCCAACCTGGACCATGAGAA
AAATATGGCTGTTTCTGTTTCTTCTGCTTTCTAATCAATCCACGAGCTTG
GACCCCCTCTGGGTCTAAATCATACATGACATCTGATACAAGTTTCCGAG
GAACAAGCAAGTGATGTTCTGTTCTAAGTTTCAAATGCATAGCCCTGTAT
CCCAGATTTTTTCCAGGACCCTGCAACTCTCTTTGAATAGCTTCCTTGAC
TGTCTCTAAGTCAATATGATGATCAACATAcctgatttcaaatttttcta
gcCTTCTGGCTAATGTTCTAACACTCCACTGATAATCAGGGAAGTCTCTT
TTCACAAAATCCACAATCTCTTCTCGTTTAAGATTTTGTTCAACATATCG
TTTCAGTGCTTCCTTGAGCTCCCAATCAATTTCCCATGCTggttcatccg
ccat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00051711-exon-scaffold_202-1491911889:735158..736057 | TCONS_00051711-exon-scaffold_202-1491911889:735158..736057 | Clytia hemisphaerica | exon |
| TCONS_00051711-exon-scaffold_202-1510915933:735158..736057 | TCONS_00051711-exon-scaffold_202-1510915933:735158..736057 | Clytia hemisphaerica | exon |
| TCONS_00051711-exon-scaffold_202-1575043694:735158..736057 | TCONS_00051711-exon-scaffold_202-1575043694:735158..736057 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_202 | supercontig | scaffold_202:735158..736057 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0015074 | DNA integration |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0015074 |
DNA integration |
| molecular_function |
GO:0003676 |
nucleic acid binding |
Blast
The following BLAST results are available for this feature:
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