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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00051511 ID=TCONS_00051511|Name=TCONS_00051511|organism=Clytia hemisphaerica|type=transcript|length=1441bp
CCGCAAAAATGAGTTCCAAtaatgtattttttatatttttatgaaatttc
atcCTGACCTTTACcttacaaaaaaatgtttttccaaaTGCCAAAGAAGT
ATATCTAGTCAActttacgtttttttatatatttgatacacaaaaaaaat
tcatccatTCATAGTATAAACAGTGTTTATTTGAGGTCACAAAGCTCCGA
TGGTTTCAAAAGCATCACTGGATCATATCCAGTCATATCCAAACTTCACA
ACAGAATATATACTGTAAGATGTCTTGAAAATCCCTCGAAATGCTCGTTG
TAGACAATAAAAAAATGATACAGCTCAATATTTTCAACACATCAAACTCG
CCAGTATTCACAGTATTCACGTCTTATTCAAGAATAACATTGAGTATTGC
TCtgcaaccaaaaaaaaaatttatgattttcgATGTAACATGACAACATC
AATTTtcatatgaaaaatataatatacaaTAGTATATTTGTCGTATAAGA
AAGTAATAAGACATTAATTGTCAAAGTATTTTTCATAATCAAACGATATa
tggttttaaatttctttgtttcttgTATACAGATCCTTCAGCTACTTCAT
CTTCATGTCTCCTTTGAATTGCCTCAGAGACTGATAACAGTAACAACAAT
TTATGGAAGAGAACATATCCATAAAGAGTAGTTATAAGGGGCAATACTCt
tgtaaaattaattaatttggGTAATATGGTGCCTTTATTATCACTCTTTG
CCAGATCCTCCAGCTATTTTAAATTGCCTCAAACAATAACACTTTGTGGT
TATAATATTCACTCTTCGTCAGGACTTGCAGCCATTTTTTCTATGTCTCT
CCTTTGAATTGACTTCAGTAACTGAAGAGAACATATCGATAAAGAGTAAT
TAACAGGGAATACTCttctaaaattaattaattttggtTTGATATGCTAC
CTCTGCATTTCACTCTTTGTCAGATCCTGCAGCTTTTTCTTCGTCTTCAG
TTTCATCTTCCGAATCTTGGTCAGCTTGTGACTTCTCATGTAAAATGACA
TACTCCCGAGAACTGAATCCAAACTTTATCACATcctaaaataaatcaaa
ttttaatCAAGTTTTAATGAGCATTTTTAGTTAAAGGGTTGTTTAATTTC
CAAGCAGATTCTGATATTCCACGCATGACACATTTTCACTGTAAAGGTCA
aggctccgtaagagaatctgaCCAGGTTGGCACAtcgctttgatcttttt
caacCAGATTTGGAATGAACATTAAATCATAAACGTTAGAATCCAGTCGC
TTTTGCTTTTgatttcgttttcaagcaaaaaacaacgcagttttgattgt
tttcgcTGAAAAGCAGGCCAGATCGTCACATTCGccatatccctttagag
cagagcgtaGAATGCGTAGAATGGATGATCggttaattaat Run BLAST on NCBI transcript from alignment at scaffold_202:680635..682371+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00051511 ID=TCONS_00051511|Name=TCONS_00051511|organism=Clytia hemisphaerica|type=transcript|length=1737bp|location=Sequence derived from alignment at scaffold_202:680635..682371+ (Clytia hemisphaerica)
CCGCAAAAATGAGTTCCAAtaatgtattttttatatttttatgaaatttc
atcCTGACCTTTACcttacaaaaaaatgtttttccaaaTGCCAAAGAAGT
ATATCTAGTCAActttacgtttttttatatatttgatacacaaaaaaaat
tcatccatTCATAGTATAAACAGTGTTTATTTGAGGTCACAAAGCTCCGA
TGGTTTCAAAAGCATCACTGGATCATATCCAGTCATATCCAAACTTCACA
ACAGAATATATACTGTAAGATGTCTTGAAAATCCCTCGAAATGCTCGTTG
TAGACAATAAAAAAATGATACAGCTCAATATTTTCAACACATCAAACTCG
CCAGTATTCACAGTATTCACGTCTTATTCAAGAATAACATTGAGTATTGC
TCtgcaaccaaaaaaaaaatttatgattttcgATGTAACATGACAACATC
AATTTtcatatgaaaaatataatatacaaTAGTATATTTGTCGTATAAGA
AAGTAATAAGACATTAATTGTCAAAGTATTTTTCATAATCAAACGATATa
tggttttaaatttctttgtttcttgTATACAGATCCTTCAGCTACTTCAT
CTTCATGTCTCCTTTGAATTGCCTCAGAGACTGATAACAGTAACAACAAT
TTATGGAAGAGAACATATCCATAAAGAGTAGTTATAAGGGGCAATACTCt
tgtaaaattaattaatttggGTAATATGGTGCCTTTATTATCACTCTTTG
CCAGATCCTCCAGCTATTTTAAATTGCCTCAAACAATAACACTTTGTGGT
TATAATATTCACTCTTCGTCAGGACTTGCAGCCATTTTTTCTATGTCTCT
CCTTTGAATTGACTTCAGTAACTGAAGAGAACATATCCATAAAGAGTAGT
TATAAGGGGCAATACTGttgtaaaattaattaatttggGNAACAGTAACA
ACAATTTATGGAAGAGAACATATCCATAAAGAGTAGTTATAAGGGGCAAT
ACTCttgtaaaattaattaatttggGTAATATGGTGCCTTTATTATCACT
CTTTGCCAGATCCTCCAGCTATTTTAAATTGCCTCAAACAATAACACTTT
GTGGTTATAATATTCACTCTTTGTCAGATCCTGCAGCCATGTCTCTCCTT
TGAATTGACTTCAGTAACTGAAGAAAACATATCGATAAAGAGTAATTAAC
AGGGAATACTCttctaaaattaattaattttggtTTGATATGCTACCTCT
GCATTTCACTCTTTGTCAGATCCTGCAGCTTTTTCTTCGTCTTCAGTTTC
ATCTTCCGAATCTTGGTCAGCTTGTGACTTCTCATGTAAAATGACATACT
CCCGAGAACTGAATCCAAACTTTATCACATcctaaaataaatcaaatttt
aatCAAGTTTTAATGAGCATTTTTAGTTAAAGGGTTGTTTAATTTCCAAG
CAGATTCTGATATTCCACGCATGACACATTTTCACTGTAAAGGTCAaggc
tccgtaagagaatctgaCCAGGTTGGCACAtcgctttgatctttttcaac
CAGATTTGGAATGAACATTAAATCATAAACGTTAGAATCCAGTCGCTTTT
GCTTTTgatttcgttttcaagcaaaaaacaacgcagttttgattgttttc
gcTGAAAAGCAGGCCAGATCGTCACATTCGccatatccctttagagcaga
gcgtaGAATGCGTAGAATGGATGATCggttaattaat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00051511-exon-scaffold_202-1491911889:680635..681516 | TCONS_00051511-exon-scaffold_202-1491911889:680635..681516 | Clytia hemisphaerica | exon |
| TCONS_00051511-exon-scaffold_202-1510915933:680635..681516 | TCONS_00051511-exon-scaffold_202-1510915933:680635..681516 | Clytia hemisphaerica | exon |
| TCONS_00051511-exon-scaffold_202-1575043694:680635..681516 | TCONS_00051511-exon-scaffold_202-1575043694:680635..681516 | Clytia hemisphaerica | exon |
| TCONS_00051511-exon-scaffold_202-1491911889:681813..682371 | TCONS_00051511-exon-scaffold_202-1491911889:681813..682371 | Clytia hemisphaerica | exon |
| TCONS_00051511-exon-scaffold_202-1510915933:681813..682371 | TCONS_00051511-exon-scaffold_202-1510915933:681813..682371 | Clytia hemisphaerica | exon |
| TCONS_00051511-exon-scaffold_202-1575043694:681813..682371 | TCONS_00051511-exon-scaffold_202-1575043694:681813..682371 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_202 | supercontig | scaffold_202:680635..682371 + |
Blast
The following BLAST results are available for this feature:
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