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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00051485 ID=TCONS_00051485|Name=TCONS_00051485|organism=Clytia hemisphaerica|type=transcript|length=4181bpRun BLAST on NCBI protein sequence of TCONS_00051485-protein >TCONS_00051485-protein ID=TCONS_00051485-protein|Name=TCONS_00051485-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1114bp MVPVYRLFLLVIVSQLALVVHSQVISASLREKIKKLKRTPQRSFLKWGYLRun BLAST on NCBI transcript from alignment at scaffold_202:194104..210231+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00051485 ID=TCONS_00051485|Name=TCONS_00051485|organism=Clytia hemisphaerica|type=transcript|length=16128bp|location=Sequence derived from alignment at scaffold_202:194104..210231+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_202:194104..210231+ >TCONS_00051485 ID=TCONS_00051485|Name=TCONS_00051485|organism=Clytia hemisphaerica|type=CDS|length=33450bp|location=Sequence derived from alignment at scaffold_202:194104..210231+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00051485 vs. Swiss-Prot (Human)
Match: MMP28 (Matrix metalloproteinase-28 OS=Homo sapiens GN=MMP28 PE=2 SV=2) HSP 1 Score: 139.813 bits (351), Expect = 3.205e-34 Identity = 90/289 (31.14%), Postives = 134/289 (46.37%), Query Frame = 1
Query: 244 KKLKRTPQRSFLKWGYLNTDSFSESMEIP-AENIKDFQNYANLPETGILDDATVDQLSKPRCGLPENVEQIXXXXXXXXXXXXXXXXXXXXXXXXXXYNRSGRSRRYLQQGTSWLPLFQKTGKNELKWTLENSGRTLDSSIIKINLRKAFDFWSQVTNLNFIEIPESQVGEPGFEKNDIEILVSFVTGQHNDPYW--FDGPDGTLAHAFYPLTNVGLSGDIHFDDDENYTIQSKDGYNFLWVAVHEIGHSIGLEHSDFDDAVMYPWFTAYDPDLQLSLDDIFGIQSIYG 1101
++L++ + K+GYLN ++ I+ FQ + LP +G+LD AT+ Q+++PRCG+ + A D + R +R+ +QG W K L + L N L ++ +R AF WS V+ L F E P + +I ++F G HND FDGP G LAHAF P G+ HFD DE +++ + G N V HEIGH++GL HS A+M P++ D LS DD+ +QS+YG
Sbjct: 30 QELRKEAEAFLEKYGYLNEQVPKAPTSTRFSDAIRAFQWVSQLPVSGVLDRATLRQMTRPRCGVTDT-------------NSYAAWAERISDLFARHRTKMRRKKRFAKQGNKWY-------KQHLSYRLVNWPEHLPEPAVRGAVRAAFQLWSNVSALEFWEAPAT---------GPADIRLTFFQGDHNDGLGNAFDGPGGALAHAFLPR-----RGEAHFDQDERWSLSRRRGRNLFVVLAHEIGHTLGLTHSPAPRALMAPYYKRLGRDALLSWDDVLAVQSLYG 284 The following BLAST results are available for this feature:
BLAST of TCONS_00051485 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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