TCONS_00051688 (transcript) - C. hemisphaerica

Overview
NameTCONS_00051688
Unique NameTCONS_00051688
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1346

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00051688 ID=TCONS_00051688|Name=TCONS_00051688|organism=Clytia hemisphaerica|type=transcript|length=1346bp
AAACCAATCAAAAACCACATTACTCCAAGATACGATtcataaattaaaaa
ttgaaataaaaaaggtaTGAACACTTGTGATATTTTACCAACACTGGATA
TCATCCCAGTGGCCGAACTGCGTACCACTGTTGGATAAGCCTCCACAGTA
AGCAGGTAACCATAAGTGCCAAATATTGTGGCAGTGCTATTAAGGATGAG
TAGCGAAGCAATACTTAGCCAGTCTGGTATACAAAATAATTGTAAGATAT
AACAAATCAGGTTTAATGCGAATCCAACTTGCATGAACAATTTTCGTCCG
TATAATCCTAACCGGTACATTATCAGGGATCCTGGGACCATACTTAGAGA
TATAAGGAACGATTGTAAATGTGCTGAGTCAGTTAAAATATCCGTGCAGT
TATTTGTTGAGTTTGTGGCGATTGTAGCTGAAAGATATTGTTTATGATGT
ACTGGTCTACAAACCGGATTCTGCAATCTGTAGGTTAACAAGAAACTCGA
CCCGTAGAAACAAGTCATCGCTCCAACCCATATGATCAAAAACAAACATG
TTGTTATAGGGTATGTCTTTAAGACGTATCTGTAACTAGCTTTATTTTTA
GATTCTCTGCACTGTAGATCCAGTTTGGACGGTATTTGGACGTCATTTGT
ACGTGCAAAACGATGTAAAATCTCCATGAGTTTCTTCTCGTTATTTGTGG
TTTGTAAATAGCGGAAAGACTCTGGAACTATCTTCAATAGAAGAGCGATA
AATAAACCTGGCGTGCATAGAATGAGCGTCAGTACGCGCCAGCCGTACCG
ATTCAAAACAAGATATGAGATCAGGTAAGCGTACATCATgccaaatataa
aaaacaatgcAAAAGCTTGAGAGTCTTTAGAGCGATGTTTCACTTTGACA
TATTCGGCGGTGAGAGTGGTAGTAGTCAGGTAAGTTGCTGTAACACCTAT
TCCCACGAACAGTCTTGTTAGACTGAAAAACGTTGCAGATTGACTTGAAG
CGTTCAAGAAAGCAAAATACAACATAAGTAATACTGCGAATACCAAGCTT
GCTTTTCGACCACGTTTATCACTCATGTAACCAAAATATAATGCACCAAT
GTTGAGTCCAAGGAAATAGGCAGCTCCTGTTAAAGCGGCTTCAAAGTTGG
TCAATCCGAATTGGCATTGTATGTAAGGTGCAACATTGGAGATTAACACT
TGGTGAGCACCTGGTACAAACCATTGCAGTGAAAGAGCGATAACGACTTG
TATAGTAAATTTATTTGACTTTGAATTCTCTAAAATATCCTCGAAAGTCA
AAgccattttttttctgtttgaaaACCATCACGTTCTCCTCAACAC
Run BLAST on NCBI

protein sequence of TCONS_00051688-protein

>TCONS_00051688-protein ID=TCONS_00051688-protein|Name=TCONS_00051688-protein|organism=Clytia hemisphaerica|type=polypeptide|length=435bp
MALTFEDILENSKSNKFTIQVVIALSLQWFVPGAHQVLISNVAPYIQCQF
GLTNFEAALTGAAYFLGLNIGALYFGYMSDKRGRKASLVFAVLLMLYFAF
LNASSQSATFFSLTRLFVGIGVTATYLTTTTLTAEYVKVKHRSKDSQAFA
LFFIFGMMYAYLISYLVLNRYGWRVLTLILCTPGLFIALLLKIVPESFRY
LQTTNNEKKLMEILHRFARTNDVQIPSKLDLQCRESKNKASYRYVLKTYP
ITTCLFLIIWVGAMTCFYGSSFLLTYRLQNPVCRPVHHKQYLSATIATNS
TNNCTDILTDSAHLQSFLISLSMVPGSLIMYRLGLYGRKLFMQVGFALNL
ICYILQLFCIPDWLSIASLLILNSTATIFGTYGYLLTVEAYPTVVRSSAT
GMISSVGKISQVFIPFLFQFLIYESYLGVMWFLIG
Run BLAST on NCBI

transcript from alignment at scaffold_202:162268..163613

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00051688 ID=TCONS_00051688|Name=TCONS_00051688|organism=Clytia hemisphaerica|type=transcript|length=1346bp|location=Sequence derived from alignment at scaffold_202:162268..163613 (Clytia hemisphaerica)
GTGTTGAGGAGAACGTGATGGTtttcaaacagaaaaaaaatggcTTTGAC
TTTCGAGGATATTTTAGAGAATTCAAAGTCAAATAAATTTACTATACAAG
TCGTTATCGCTCTTTCACTGCAATGGTTTGTACCAGGTGCTCACCAAGTG
TTAATCTCCAATGTTGCACCTTACATACAATGCCAATTCGGATTGACCAA
CTTTGAAGCCGCTTTAACAGGAGCTGCCTATTTCCTTGGACTCAACATTG
GTGCATTATATTTTGGTTACATGAGTGATAAACGTGGTCGAAAAGCAAGC
TTGGTATTCGCAGTATTACTTATGTTGTATTTTGCTTTCTTGAACGCTTC
AAGTCAATCTGCAACGTTTTTCAGTCTAACAAGACTGTTCGTGGGAATAG
GTGTTACAGCAACTTACCTGACTACTACCACTCTCACCGCCGAATATGTC
AAAGTGAAACATCGCTCTAAAGACTCTCAAGCTTTTgcattgttttttat
atttggcATGATGTACGCTTACCTGATCTCATATCTTGTTTTGAATCGGT
ACGGCTGGCGCGTACTGACGCTCATTCTATGCACGCCAGGTTTATTTATC
GCTCTTCTATTGAAGATAGTTCCAGAGTCTTTCCGCTATTTACAAACCAC
AAATAACGAGAAGAAACTCATGGAGATTTTACATCGTTTTGCACGTACAA
ATGACGTCCAAATACCGTCCAAACTGGATCTACAGTGCAGAGAATCTAAA
AATAAAGCTAGTTACAGATACGTCTTAAAGACATACCCTATAACAACATG
TTTGTTTTTGATCATATGGGTTGGAGCGATGACTTGTTTCTACGGGTCGA
GTTTCTTGTTAACCTACAGATTGCAGAATCCGGTTTGTAGACCAGTACAT
CATAAACAATATCTTTCAGCTACAATCGCCACAAACTCAACAAATAACTG
CACGGATATTTTAACTGACTCAGCACATTTACAATCGTTCCTTATATCTC
TAAGTATGGTCCCAGGATCCCTGATAATGTACCGGTTAGGATTATACGGA
CGAAAATTGTTCATGCAAGTTGGATTCGCATTAAACCTGATTTGTTATAT
CTTACAATTATTTTGTATACCAGACTGGCTAAGTATTGCTTCGCTACTCA
TCCTTAATAGCACTGCCACAATATTTGGCACTTATGGTTACCTGCTTACT
GTGGAGGCTTATCCAACAGTGGTACGCAGTTCGGCCACTGGGATGATATC
CAGTGTTGGTAAAATATCACAAGTGTTCAtaccttttttatttcaatttt
taatttatgaATCGTATCTTGGAGTAATGTGGTTTTTGATTGGTTT

Coding sequence (CDS) from alignment at scaffold_202:162268..163613

>TCONS_00051688 ID=TCONS_00051688|Name=TCONS_00051688|organism=Clytia hemisphaerica|type=CDS|length=1305bp|location=Sequence derived from alignment at scaffold_202:162268..163613 (Clytia hemisphaerica)
atggcTTTGACTTTCGAGGATATTTTAGAGAATTCAAAGTCAAATAAATT
TACTATACAAGTCGTTATCGCTCTTTCACTGCAATGGTTTGTACCAGGTG
CTCACCAAGTGTTAATCTCCAATGTTGCACCTTACATACAATGCCAATTC
GGATTGACCAACTTTGAAGCCGCTTTAACAGGAGCTGCCTATTTCCTTGG
ACTCAACATTGGTGCATTATATTTTGGTTACATGAGTGATAAACGTGGTC
GAAAAGCAAGCTTGGTATTCGCAGTATTACTTATGTTGTATTTTGCTTTC
TTGAACGCTTCAAGTCAATCTGCAACGTTTTTCAGTCTAACAAGACTGTT
CGTGGGAATAGGTGTTACAGCAACTTACCTGACTACTACCACTCTCACCG
CCGAATATGTCAAAGTGAAACATCGCTCTAAAGACTCTCAAGCTTTTgca
ttgttttttatatttggcATGATGTACGCTTACCTGATCTCATATCTTGT
TTTGAATCGGTACGGCTGGCGCGTACTGACGCTCATTCTATGCACGCCAG
GTTTATTTATCGCTCTTCTATTGAAGATAGTTCCAGAGTCTTTCCGCTAT
TTACAAACCACAAATAACGAGAAGAAACTCATGGAGATTTTACATCGTTT
TGCACGTACAAATGACGTCCAAATACCGTCCAAACTGGATCTACAGTGCA
GAGAATCTAAAAATAAAGCTAGTTACAGATACGTCTTAAAGACATACCCT
ATAACAACATGTTTGTTTTTGATCATATGGGTTGGAGCGATGACTTGTTT
CTACGGGTCGAGTTTCTTGTTAACCTACAGATTGCAGAATCCGGTTTGTA
GACCAGTACATCATAAACAATATCTTTCAGCTACAATCGCCACAAACTCA
ACAAATAACTGCACGGATATTTTAACTGACTCAGCACATTTACAATCGTT
CCTTATATCTCTAAGTATGGTCCCAGGATCCCTGATAATGTACCGGTTAG
GATTATACGGACGAAAATTGTTCATGCAAGTTGGATTCGCATTAAACCTG
ATTTGTTATATCTTACAATTATTTTGTATACCAGACTGGCTAAGTATTGC
TTCGCTACTCATCCTTAATAGCACTGCCACAATATTTGGCACTTATGGTT
ACCTGCTTACTGTGGAGGCTTATCCAACAGTGGTACGCAGTTCGGCCACT
GGGATGATATCCAGTGTTGGTAAAATATCACAAGTGTTCAtacctttttt
atttcaatttttaatttatgaATCGTATCTTGGAGTAATGTGGTTTTTGA
TTGGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032719XLOC_032719Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051688-proteinTCONS_00051688-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051688-exon-scaffold_202-1491911889:162268..163613TCONS_00051688-exon-scaffold_202-1491911889:162268..163613Clytia hemisphaericaexon
TCONS_00051688-exon-scaffold_202-1510915933:162268..163613TCONS_00051688-exon-scaffold_202-1510915933:162268..163613Clytia hemisphaericaexon
TCONS_00051688-exon-scaffold_202-1575043694:162268..163613TCONS_00051688-exon-scaffold_202-1575043694:162268..163613Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_202supercontigscaffold_202:162268..163613 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
26.8345	28.5108	11.8707	9.85087	9.84646	7.28204	16.6884	16.7877	9.20294	10.9759	6.63868	6.98241	9.69123	10.4093	6.62655	7.41554	8.99479	7.46673	3.15109	3.05443	6.69747	5.91554	43.6833	37.6653	5.05868	2.9899	9.71229	7.89948	19.3251	25.6878
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR005828MFS_sugar_transport-like
IPR020846MFS_dom
Vocabulary: Molecular Function
TermDefinition
GO:0022857transmembrane transporter activity
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
Vocabulary: Biological Process
TermDefinition
GO:0055085transmembrane transport
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0055085 transmembrane transport
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0022857 transmembrane transporter activity
Blast
[Close]
BLAST of TCONS_00051688 vs. Swiss-Prot (Human)
Match: SVOP (Synaptic vesicle 2-related protein OS=Homo sapiens GN=SVOP PE=2 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 2.130e-38
Identity = 115/436 (26.38%), Postives = 205/436 (47.02%), Query Frame = -1 
Query:   33 FSNRKKMALTFEDILENSKSNKFTIQVVIALSLQWFVPGAHQVLISNVAPYIQCQFGLTNFEAALTGAAYFLGLNIGALYFGYMSDKRGRKASLVFAVLLMLYFAFLNASSQSATFFSLTRLFVGIGVXXXXXXXXXXXAEYVKVKHRSKDSQAFALFFIFGMMYAYLISYLVLNRYGWRVLTLILCTPGLFIALLLKIVPESFRYLQTTNNEKKLMEILHRFARTNDVQIP-SKLDLQCRESKNKASYRYVLKTYPITTCLFLIIWVGAMTCFYGSSFLLTYRLQ-NPVCRPVHHKQYLSATIATNSTNNCTDILTDSAHLQSFLISLSMVPGSLI-MYRLGLYGRKLFMQVGFALNLICYILQLFCIPDWLSIASLLILNSTATIFGTY--GYLLTVEAYPTVVRSSATGMISSVGKISQVFIPFLFQFLIYES 1325
            F+N        ED +E     KF  ++ +   L W       +++S +AP + C++ L +++ AL  +  F+G+   +  +G +SD+ GRK  L  +VL  LY+  L+A +   ++  + R  VG G+      + TL AE++ +K R+K      +F+  G ++  +++  V+   GWR L ++   P L  A+L   +PES RY   + N++K +  L R A  N   +P  KL +  +E + K    +    +  TT L   IW      +YG   L T   Q   VC     K+ + A  +        + L++  ++     +LS  PG L+ ++ +   GRK  M + F +   C +L   C+    ++ +LL+  + A I G +   Y+ T E YPT  R+   G  S + ++  +  PF+ Q ++  S
Sbjct:   60 FANPTDDTFMVEDAVEAIGFGKFQWKLSVLTGLAWMADAMEMMILSILAPQLHCEWRLPSWQVALLTSVVFVGMMSSSTLWGNISDQYGRKTGLKISVLWTLYYGILSAFAPVYSWILVLRGLVGFGI-GGVPQSVTLYAEFLPMKARAKCILLIEVFWAIGTVFEVVLAVFVMPSLGWRWLLILSAVPLLLFAVLCFWLPESARYDVLSGNQEKAIATLKRIATENGAPMPLGKLIISRQEDRGKMRDLFT-PHFRWTTLLLWFIWFSNAFSYYGLVLLTTELFQAGDVCGISSRKKAVEAKCSL-----ACEYLSEEDYMDLLWTTLSEFPGVLVTLWIIDRLGRKKTMALCFVIFSFCSLLLFICVGR--NVLTLLLFIARAFISGGFQAAYVYTPEVYPTATRALGLGTCSGMARVGALITPFIAQVMLESS 486
The following BLAST results are available for this feature:
BLAST of TCONS_00051688 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SVOP2.130e-3826.38Synaptic vesicle 2-related protein OS=Homo sapiens... [more]
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