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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00051685 ID=TCONS_00051685|Name=TCONS_00051685|organism=Clytia hemisphaerica|type=transcript|length=1058bp
CGAGGGTTGGATTTGCGTTTCTTGAAAGGTCTCTATTTATAGACCTTCTG
CGTGAATGGAGGATTCAATTTTTCTCAGATGTCCCAGGATGTCTTTTCAA
GGTCAAGGAGATCTTGGAGGAGATTATCTTTCTCGCTGTAGTCAACCTCA
ATCCCAGAAGCCTTGAGCtctgcattatttttctttttaaacgctTCCAG
TGATTTGCCTAATCTGTCCTTGACTGTCCTGATTTCATAAATTTCATCAC
CAGGAAATAGCTCgttcatttttgaaaagacATTAAGCCCATTTAACCTT
TCgctcttttgtttgttttgtggTATTAAAAAGTTCACAAGAAAGTGTCT
CTTTAAATAGGACAATATATCGTGCATCGTCAAACTTTATCTTTTTCGTT
GATGGCTTTGACGATGTTATGTTGGTGTAGGAGGTGTTAGAAGGCTTGGT
TATATTAGTGATGGTGGACGTTGGAATTTTAAAAGCCTGATGAAATGCTT
AAGGTTTGGTGGTAGCAGGCGTGAACGTGGCGACAGGTTTAGCTGTGATG
GTGGTAGTGGAGGAGGCATACATTTCTTTTGGTACAATTTTTCTGTCGGG
GAGGAAATTGAGTGGCTTAGTGGAAATAGTAGTTGAAAAAAACGATTTGG
CGACAGCAGAAGAAGTATAAGAGGTGGATGGTGGAAAAATGTAAATAGCC
TTTTTAATGCGGTGTTGTGGTGACGTGGTGATCTTAGTGGCAGGTCTTTT
TTGGCAAGTAGGTAAGAAAAGTTTGTTGGGTTGGGTGACATTTTGGTTAT
TTGTTGTAGATATTTTGTTGACACTGAAAATGATAAAGAAAAGTTTTGAC
ATTAAAACCAGTCAACCGCCAAGTTTATGTAAAAAATATTTGCCTTTTGA
TGTCTTTTatgtatgaaaaaaaatcattgtcaaCACTACAACTTCTGCTG
ATAATCAACTGCAGAAATACTTACACTTCGACTCTGTATAACTTTCTTTG
ACCACCCCCAAGTCTTTGCAAGAATgtttagaaaaaaactttaaaaatct
aCAACTGC Run BLAST on NCBI protein sequence of TCONS_00051685-protein >TCONS_00051685-protein ID=TCONS_00051685-protein|Name=TCONS_00051685-protein|organism=Clytia hemisphaerica|type=polypeptide|length=117bp
MSKLFFIIFSVNKISTTNNQNVTQPNKLFLPTCQKRPATKITTSPQHRIK
KAIYIFPPSTSYTSSAVAKSFFSTTISTKPLNFLPDRKIVPKEMYASSTT
TITAKPVATFTPATTKP Run BLAST on NCBI transcript from alignment at scaffold_202:101514..102571 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00051685 ID=TCONS_00051685|Name=TCONS_00051685|organism=Clytia hemisphaerica|type=transcript|length=1058bp|location=Sequence derived from alignment at scaffold_202:101514..102571 (Clytia hemisphaerica)
GCAGTTGtagatttttaaagtttttttctaaacATTCTTGCAAAGACTTG
GGGGTGGTCAAAGAAAGTTATACAGAGTCGAAGTGTAAGTATTTCTGCAG
TTGATTATCAGCAGAAGTTGTAGTGttgacaatgattttttttcatacat
AAAAGACATCAAAAGGCAAATATTTTTTACATAAACTTGGCGGTTGACTG
GTTTTAATGTCAAAACTTTTCTTTATCATTTTCAGTGTCAACAAAATATC
TACAACAAATAACCAAAATGTCACCCAACCCAACAAACTTTTCTTACCTA
CTTGCCAAAAAAGACCTGCCACTAAGATCACCACGTCACCACAACACCGC
ATTAAAAAGGCTATTTACATTTTTCCACCATCCACCTCTTATACTTCTTC
TGCTGTCGCCAAATCGTTTTTTTCAACTACTATTTCCACTAAGCCACTCA
ATTTCCTCCCCGACAGAAAAATTGTACCAAAAGAAATGTATGCCTCCTCC
ACTACCACCATCACAGCTAAACCTGTCGCCACGTTCACGCCTGCTACCAC
CAAACCTTAAGCATTTCATCAGGCTTTTAAAATTCCAACGTCCACCATCA
CTAATATAACCAAGCCTTCTAACACCTCCTACACCAACATAACATCGTCA
AAGCCATCAACGAAAAAGATAAAGTTTGACGATGCACGATATATTGTCCT
ATTTAAAGAGACACTTTCTTGTGAACTTTTTAATAccacaaaacaaacaa
aagagcGAAAGGTTAAATGGGCTTAATgtcttttcaaaaatgaacGAGCT
ATTTCCTGGTGATGAAATTTATGAAATCAGGACAGTCAAGGACAGATTAG
GCAAATCACTGGAagcgtttaaaaagaaaaataatgcagaGCTCAAGGCT
TCTGGGATTGAGGTTGACTACAGCGAGAAAGATAATCTCCTCCAAGATCT
CCTTGACCTTGAAAAGACATCCTGGGACATCTGAGAAAAATTGAATCCTC
CATTCACGCAGAAGGTCTATAAATAGAGACCTTTCAAGAAACGCAAATCC
AACCCTCG Coding sequence (CDS) from alignment at scaffold_202:101514..102571 >TCONS_00051685 ID=TCONS_00051685|Name=TCONS_00051685|organism=Clytia hemisphaerica|type=CDS|length=354bp|location=Sequence derived from alignment at scaffold_202:101514..102571 (Clytia hemisphaerica)
ATGTCAAAACTTTTCTTTATCATTTTCAGTGTCAACAAAATATCTACAAC
AAATAACCAAAATGTCACCCAACCCAACAAACTTTTCTTACCTACTTGCC
AAAAAAGACCTGCCACTAAGATCACCACGTCACCACAACACCGCATTAAA
AAGGCTATTTACATTTTTCCACCATCCACCTCTTATACTTCTTCTGCTGT
CGCCAAATCGTTTTTTTCAACTACTATTTCCACTAAGCCACTCAATTTCC
TCCCCGACAGAAAAATTGTACCAAAAGAAATGTATGCCTCCTCCACTACC
ACCATCACAGCTAAACCTGTCGCCACGTTCACGCCTGCTACCACCAAACC
TTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00051685-exon-scaffold_202-1491911889:101514..102571 | TCONS_00051685-exon-scaffold_202-1491911889:101514..102571 | Clytia hemisphaerica | exon |
| TCONS_00051685-exon-scaffold_202-1510915933:101514..102571 | TCONS_00051685-exon-scaffold_202-1510915933:101514..102571 | Clytia hemisphaerica | exon |
| TCONS_00051685-exon-scaffold_202-1575043694:101514..102571 | TCONS_00051685-exon-scaffold_202-1575043694:101514..102571 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_202 | supercontig | scaffold_202:101514..102571 . |
Blast
The following BLAST results are available for this feature:
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