TCONS_00051472 (transcript) - C. hemisphaerica

Overview
NameTCONS_00051472
Unique NameTCONS_00051472
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length373

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00051472 ID=TCONS_00051472|Name=TCONS_00051472|organism=Clytia hemisphaerica|type=transcript|length=373bp
AAGGGGTCCAAAGACGGGCAACAAGACTGATTCCGCAGTATCGTAATCTC
CACTACGAGGAGCGTTTACAAAGACTCAAGCTTCCATCTCTTGAGTTTAG
AAGACTTTTCTCCGATATAAAATGGTCCAAATGTATAAGCATATCCATTT
TTATGATCCAAAAACAACTCGGGACAAGCTAGTTAAAAGAACTCGTCCAG
CCAGATTTCACGATCACGAATTCGTTCCAAACTTTGCTGCTGATGGTCTT
CGAGGAGCGCAAACAAAGTTATTCTACTATAGAACAATCCCTACATGGAA
TGCATTGCCACGATTTGTCGTCGAGTCGACCTCCATTCACTTGTTTCAAC
AAAACCTTAATGAAGCGTGGAAA
Run BLAST on NCBI

transcript from alignment at scaffold_201:656921..657293

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00051472 ID=TCONS_00051472|Name=TCONS_00051472|organism=Clytia hemisphaerica|type=transcript|length=373bp|location=Sequence derived from alignment at scaffold_201:656921..657293 (Clytia hemisphaerica)
TTTCCACGCTTCATTAAGGTTTTGTTGAAACAAGTGAATGGAGGTCGACT
CGACGACAAATCGTGGCAATGCATTCCATGTAGGGATTGTTCTATAGTAG
AATAACTTTGTTTGCGCTCCTCGAAGACCATCAGCAGCAAAGTTTGGAAC
GAATTCGTGATCGTGAAATCTGGCTGGACGAGTTCTTTTAACTAGCTTGT
CCCGAGTTGTTTTTGGATCATAAAAATGGATATGCTTATACATTTGGACC
ATTTTATATCGGAGAAAAGTCTTCTAAACTCAAGAGATGGAAGCTTGAGT
CTTTGTAAACGCTCCTCGTAGTGGAGATTACGATACTGCGGAATCAGTCT
TGTTGCCCGTCTTTGGACCCCTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032626XLOC_032626Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051472-exon-scaffold_201-1491911889:656921..657293TCONS_00051472-exon-scaffold_201-1491911889:656921..657293Clytia hemisphaericaexon
TCONS_00051472-exon-scaffold_201-1510915933:656921..657293TCONS_00051472-exon-scaffold_201-1510915933:656921..657293Clytia hemisphaericaexon
TCONS_00051472-exon-scaffold_201-1575043694:656921..657293TCONS_00051472-exon-scaffold_201-1575043694:656921..657293Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_201supercontigscaffold_201:656921..657293 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.402848	1.35056	3.11604	2.71142	1.72944	1.47687	1.30389	1.25551	0.678478	0	2.14352	0.850225	1.95229	2.12124	0.869959	0.895419	1.1271	1.84329	1.30603	2.86354	0.430264	0	0	1.36779	3.85472	2.5907	1.55426	1.66809	1.12162	0.244631
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00051472 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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