TCONS_00051459 (transcript) - C. hemisphaerica

Overview
NameTCONS_00051459
Unique NameTCONS_00051459
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length527

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00051459 ID=TCONS_00051459|Name=TCONS_00051459|organism=Clytia hemisphaerica|type=transcript|length=527bp
NGGGAGTTGGATGAGAAAGAAATGAGAAAGATGAGGCATCAAAGTGGACA
AAGGTTTGAAAGGAAAAGTTATCTAAATAAAATGGGATTAAAGGAAGCTA
GTGAAACGATGAGAAGGAGGCTTGAAATGATAGATGTTGGTAGTAACTTT
GGAAGGAAGAGAACATGCAGGCTATGCGAGGAGAAAGAAAGCACTGAACA
CATGATAACATGTAGAAGTACAACAGCTCCTGCCGAATTGACAGTAGCAT
GCTTGAAGGAAACGGACGATCTTAACATCATTAGACAAACAAATCAATTT
CTAAATCTCCAAATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATCAA
TTTCTAAATCTCCAAATAGAAAAAAGAGACAAAGAGGAAAAACTAAAAGA
AACATTGTAAACAAATCAAAAGGNaaaaaaaaagaaacaaatgtCTTGCA
CCTTATACGTGATTTAGCGGAAGAAGGTGCTTGTTGATGTAACACTGTCA
ACAAAGAGGACGATTATAAGATTCAAG
Run BLAST on NCBI

protein sequence of TCONS_00051459-protein

>TCONS_00051459-protein ID=TCONS_00051459-protein|Name=TCONS_00051459-protein|organism=Clytia hemisphaerica|type=polypeptide|length=118bp
XELDEKEMRKMRHQSGQRFERKSYLNKMGLKEASETMRRRLEMIDVGSNF
GRKRTCRLCEEKESTEHMITCRSTTAPAELTVACLKETDDLNIIRQTNQF
LNLQIXXXXXXXXXXINF
Run BLAST on NCBI

transcript from alignment at scaffold_201:463473..463999

Legend: exonthree_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00051459 ID=TCONS_00051459|Name=TCONS_00051459|organism=Clytia hemisphaerica|type=transcript|length=527bp|location=Sequence derived from alignment at scaffold_201:463473..463999 (Clytia hemisphaerica)
CTTGAATCTTATAATCGTCCTCTTTGTTGACAGTGTTACATCAACAAGCA
CCTTCTTCCGCTAAATCACGTATAAGGTGCAAGacatttgtttctttttt
tttNCCTTTTGATTTGTTTACAATGTTTCTTTTAGTTTTTCCTCTTTGTC
TCTTTTTTCTATTTGGAGATTTAGAAATTGATNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNTATTTGGAGATTTAGAAATTGATTTGTTTGTCTAATGA
TGTTAAGATCGTCCGTTTCCTTCAAGCATGCTACTGTCAATTCGGCAGGA
GCTGTTGTACTTCTACATGTTATCATGTGTTCAGTGCTTTCTTTCTCCTC
GCATAGCCTGCATGTTCTCTTCCTTCCAAAGTTACTACCAACATCTATCA
TTTCAAGCCTCCTTCTCATCGTTTCACTAGCTTCCTTTAATCCCATTTTA
TTTAGATAACTTTTCCTTTCAAACCTTTGTCCACTTTGATGCCTCATCTT
TCTCATTTCTTTCTCATCCAACTCCCN

Coding sequence (CDS) from alignment at scaffold_201:463473..463999

>TCONS_00051459 ID=TCONS_00051459|Name=TCONS_00051459|organism=Clytia hemisphaerica|type=CDS|length=357bp|location=Sequence derived from alignment at scaffold_201:463473..463999 (Clytia hemisphaerica)
TTAGAAATTGATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATTTGGA
GATTTAGAAATTGATTTGTTTGTCTAATGATGTTAAGATCGTCCGTTTCC
TTCAAGCATGCTACTGTCAATTCGGCAGGAGCTGTTGTACTTCTACATGT
TATCATGTGTTCAGTGCTTTCTTTCTCCTCGCATAGCCTGCATGTTCTCT
TCCTTCCAAAGTTACTACCAACATCTATCATTTCAAGCCTCCTTCTCATC
GTTTCACTAGCTTCCTTTAATCCCATTTTATTTAGATAACTTTTCCTTTC
AAACCTTTGTCCACTTTGATGCCTCATCTTTCTCATTTCTTTCTCATCCA
ACTCCCN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032613XLOC_032613Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051459-exon-scaffold_201-1491911889:463473..463999TCONS_00051459-exon-scaffold_201-1491911889:463473..463999Clytia hemisphaericaexon
TCONS_00051459-exon-scaffold_201-1510915933:463473..463999TCONS_00051459-exon-scaffold_201-1510915933:463473..463999Clytia hemisphaericaexon
TCONS_00051459-exon-scaffold_201-1575043694:463473..463999TCONS_00051459-exon-scaffold_201-1575043694:463473..463999Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051459-proteinTCONS_00051459-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_201supercontigscaffold_201:463473..463999 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.32963	2.04239	2.33854	3.548	1.69293	0.425394	1.56653	2.05656	0.734426	0.912539	0.454342	1.57338	1.04492	0.727461	1.13178	1.27207	2.03753	0.600899	0.462811	0.590564	2.44525	1.16953	1.12837	0.650206	0.710956	0.182125	2.00691	1.49326	1.37852	0.817059
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00051459 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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