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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00051383 ID=TCONS_00051383|Name=TCONS_00051383|organism=Clytia hemisphaerica|type=transcript|length=394bp
AAGGAACTCAAAAAAAACTATATGATGACAACACACGTTTGTAATAAGAA
TGACAGTTCAAAGCAAAGGTTTGGTGTGGTTCGTATCAAACCTTTAGGTG
CTGGTGGAGGAGGGGTGGAAACAAGTTCCGCCACAGGAAAGTCAATCATA
GACTTCTCAAaggACCATGTTTCAGTTCGAGACCGCAAGAAATACAGTTA
TCCAAGCATGATTATCCCTCCTCGTATGAAACAAGATGAATTATTTGATA
ACTTCATGCCAAAATGTATTGATGACTTCTTTCAAGGGTACAACGTGAAC
GTGATTGCATACGGACAGACAGGGACGGGAAAAACACACACTATGTTTGG
ACCACCTGGTTGCATGAAACGTGCTGCCCGCGGAGAGTACAGTT Run BLAST on NCBI transcript from alignment at scaffold_201:332438..334629+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00051383 ID=TCONS_00051383|Name=TCONS_00051383|organism=Clytia hemisphaerica|type=transcript|length=2192bp|location=Sequence derived from alignment at scaffold_201:332438..334629+ (Clytia hemisphaerica)
AAGGAACTCAAAAAAAACTATATGATGACAACACACGTTTGTAATAAGAA
TGACAGTTCAAAGCAAAGGTTTGGTGTGGTTCGTATCAAACCTTTAGGTG
CTGGTGGAGGAGGGGTGGAAACAAGTTCCGCCACAGGAAAGTCAATCATA
GACTTCTCAAaggttttttgtgtttttattttgttccaGTATTGGTTTTT
CAGGAAAATGATTCCCAGTTGCAGAGGAAGTGATCTTCATTATATTTCTG
GGAATATAACCCCTGTGTGTAAGATACATCTTACACAagggaatttattt
ttcaataaaaaacatatCTTTATAATTCTAAAGGAAAATCACTTTCCTGA
TATCTCAAGAAATAAATGTTTTTTGCAAGACAAATTATGTTTTTGTTCTC
ATAGAAACTGATAGAAATGATGTTCTGAATgctctttatattttttttcc
aggaaATTTTAACATAACGTCAGACTGGGTTTAGGTCGCAGAAATTAGGT
TCCctctgagttttaagtcccccaaaagattcataaatttttttggtaGC
CCCCAGGGCTTTCTACCCTCAacacttttaaaagtttttcaatttcaatt
tcacttTGAAAACTACTTATGTagtatttttcaagaaaattaccgttgta
tttctcaaggaaaattgCCTATGTTATTCTcaaagaaaatcttttggtaT
TCTCAAGtaaaattacttttttgtatttctcaaggaaaattactcttcta
tttctaaaggaaaattatttttgtatttctcaaggaaaaccaggggggca
cgcagttactacaagacatgatgtgtagtaagtgctttttcaacactttt
tttcaggaccaccaccctttgcagttactacNtaagcacttactacacca
aaagtgctagcgttagtgtttggcaccacccccaaacagcagttactaca
ctgtgtagtaactgttttcataatacagtaccaccacggtagtaagtgtc
atactgtcttgtagtaactgcgtgcccccccccccacctgGGAAAACTAc
ctttgtatttctcaaggagaATTACCTTTGCATTTTCTCAaggaaagctt
ttttttttactgGCATATTTAAAAAGTCTTACAGACCTACTTTTCCGGGA
CAGTTAATTGTCTTGTTGTCTGGTaggtttatttttttcattttttaata
atttattaCTGTATCCCTTTCATAACCTTcagtcttctttttttaatagg
ACCATGTTTCAGTTCGAGACCGCAAGAAATACAGTTATCCAAGCATGATT
ATCCCTCCTCGTATGAAACAAGATGAATTATTTGATAACTTCATGCCAAA
ATGTATTGATGACTTCTTTCAAGGTATCCAAAAAAATACTGCTAAATATC
AATAGATTATAACTACCAAGAAATGACATCAATGGGTCTTGATGAATGAT
TGTCTATCATATTACATCGTGCTGTGTCGTGTTGTGATTGTCTTTTGATT
TTCCATTTAGTGTAAAAGTTTTCTAATTTGTTTGTTAGGGTACAACGTGA
ACGTGATTGCATACGGACAGACAGGGACGGGAAAAACACACACTATGTTT
GGACCACCTGGTTGCATGAAACGTGCTGCCCGGTAAGTTTGATTCTGGTT
TTGTTTAAACAAATTAATTTTATGGGATAGTGTTAAAATGAAAGTATTTT
TAATAGAGTACAGAAATTATGATTTTATCCAATGGGAGGGACTGATTTAT
ATATCATGATAAGATTTTGCCATCGCTTCACTATCATTGATACACTTTCC
ATTTCTGAAGTTTGCTGTTAGATTGACTTGATTAATCAAAACATGCATCC
CGAAGTTGAATATTATATAGAATGGTTGCGCTAAATTCAGTTTTATAAAC
AATCTTCAACCAAAACCAAAACCTGTTAACCGTTTCTAATCAACATAATC
AATTTCAACCACAGAAAAAAAAGGGACAAAACTGTGCGACAAAggggaaa
tatttttaaaatgtttgtgCTAAGGAGGAAGGGCTAGATCACCTGTACAT
ACTCTCTTTCTGCCATTTCTAGAAAAAATGGCTGATTGTCGGTAAGAATT
ACAGTTGTTTACAGTCTGTTTGTGTAATTGGAAAATTTCCTGGATCAAGC
AAAAGTTTTAATTGATCTTTATTTTCAGCGGAGAGTACAGTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00051383-exon-scaffold_201-1491911889:332438..332599 | TCONS_00051383-exon-scaffold_201-1491911889:332438..332599 | Clytia hemisphaerica | exon |
| TCONS_00051383-exon-scaffold_201-1510915933:332438..332599 | TCONS_00051383-exon-scaffold_201-1510915933:332438..332599 | Clytia hemisphaerica | exon |
| TCONS_00051383-exon-scaffold_201-1575043694:332438..332599 | TCONS_00051383-exon-scaffold_201-1575043694:332438..332599 | Clytia hemisphaerica | exon |
| TCONS_00051383-exon-scaffold_201-1491911889:333687..333810 | TCONS_00051383-exon-scaffold_201-1491911889:333687..333810 | Clytia hemisphaerica | exon |
| TCONS_00051383-exon-scaffold_201-1510915933:333687..333810 | TCONS_00051383-exon-scaffold_201-1510915933:333687..333810 | Clytia hemisphaerica | exon |
| TCONS_00051383-exon-scaffold_201-1575043694:333687..333810 | TCONS_00051383-exon-scaffold_201-1575043694:333687..333810 | Clytia hemisphaerica | exon |
| TCONS_00051383-exon-scaffold_201-1491911889:333976..334069 | TCONS_00051383-exon-scaffold_201-1491911889:333976..334069 | Clytia hemisphaerica | exon |
| TCONS_00051383-exon-scaffold_201-1510915933:333976..334069 | TCONS_00051383-exon-scaffold_201-1510915933:333976..334069 | Clytia hemisphaerica | exon |
| TCONS_00051383-exon-scaffold_201-1575043694:333976..334069 | TCONS_00051383-exon-scaffold_201-1575043694:333976..334069 | Clytia hemisphaerica | exon |
| TCONS_00051383-exon-scaffold_201-1491911889:334616..334629 | TCONS_00051383-exon-scaffold_201-1491911889:334616..334629 | Clytia hemisphaerica | exon |
| TCONS_00051383-exon-scaffold_201-1510915933:334616..334629 | TCONS_00051383-exon-scaffold_201-1510915933:334616..334629 | Clytia hemisphaerica | exon |
| TCONS_00051383-exon-scaffold_201-1575043694:334616..334629 | TCONS_00051383-exon-scaffold_201-1575043694:334616..334629 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_201 | supercontig | scaffold_201:332438..334629 + |
Blast
The following BLAST results are available for this feature:
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