TCONS_00051377 (transcript) - C. hemisphaerica

Overview
NameTCONS_00051377
Unique NameTCONS_00051377
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length347

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00051377 ID=TCONS_00051377|Name=TCONS_00051377|organism=Clytia hemisphaerica|type=transcript|length=347bp
CGCTCAACGAAAAACACGTGGTGGTTTTTGGTACTCAAAATGCGGTGACT
TTTTTCCTAATGGTATTTACTATGAAGAAACTGATTCGTTTAAACCTGAC
CCTTATTTGTATCATGGCATTAGATATACGAAATGGAACCGTCTTTATAC
TTTGAAATCAGTTGAAAtgatgatcaaaagaaaagagTAGCGTATGACTT
GGGTAGCTTGAAGCCCGGggccacttatagctttttgTTAGTCTGATGGC
GTTGATAAGCGGCCGGTGTAGTTGGACCGATTcgattttttggctttgct
tgaggtggcAGCAAATCCATAGtactagatccagtccctttttggag
Run BLAST on NCBI

transcript from alignment at scaffold_201:151459..155656+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00051377 ID=TCONS_00051377|Name=TCONS_00051377|organism=Clytia hemisphaerica|type=transcript|length=4198bp|location=Sequence derived from alignment at scaffold_201:151459..155656+ (Clytia hemisphaerica)
CGCTCAACGAAAAACACGTGGTGGTTTTTGGTACGACAATTGCGGTAACT TTTTTCCTAATGGTGTTTACTATGAAGAAAGTGATTCGTTTAAACCTGAC CCTTATTTGTATCATGGCATTAGATATGCAAATTGGAACCGTCTTTATAC TTTGAAATCAGTTGAAAtgatgatcaaaagaaaagagTAGCGCATGACTG GGTGGCTTGAGAGAACTTTGGAATTCTGGACTTAACATGacgattttttt ctaaacaactTTATTGTAGATCCTTTCGGAGAGGCAGAAATGCCTGCGAA GGGGAAttcataaaatatttaaataaattaTTTGCAGAACCCCATATTCC GATTTTTTAAAAGTTCCGTAACTTAAGTAAAAGCGGCCATTAtatggaaa aattcaaatttgtaCAAACGATTCCTTATGCAAATccaacgtttgcttcc ataatttTAAGAAACCTCGACTTTTCATCGACAAACTTGATCGAGAAATA AAACTGATGGCTCAGCAAAGGTCTGGTTGCCAAGGGAgaagggggtactt aggcaaacggagggtacggtatgttcCACCCTTAAGGGCacattttttgg atttccaaagtcccactaaggTCGGGGAAAtcacaaaatcaaatttcagt cccactaagggtcggataaataggaaaatttcatctttttacCCCTgtaa agatcgaaatttggtcaaaattggtcatatTTGTCCCGATAAGGGTcgta attcaaaaattttttctttgttttctctatTTTAGTCCCATTAAGGGTCC AAGgtggtcgaaagtcgggcggcaccccccccccccNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NcccccccccccccccggcagctcgcaaccctagtacccccgggtaCTGA TGagtctcaaaaaaaaaacttttatcatGAACAGCGtaaataaacatatt tttataagtcttcaaaacaatggaaatggaaagaatagtataatattttg tagtgaggattggtttaatTGGCTGTTTTCAGTAGGGGAAAAAATTGAAG GCTAATTTCCCATGCTACCAGGGACGATAATTTGGCCAATTTGTCAGTGA GAGGGGGTGTTTAATTTATGACCAAAAActctcaatttttttcttgtaca cgctttttttttttataagaataNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNgaataccgtaagaatatttttggatgattttcgcca aaaagttaagaatatccatgatgaaatgaaaaacaccattcttataaaaa aaaaagcgtgtagttgtAAATCTTTAATTAGCTTTCATCTCAACAACTTA TTTTTCCCAAGCAGTTTAAATATTAGGCGAAATTTTCTACTTAAATTCGT CTTGTTAATTATTCAATGACTTATTCATATAAGTTGTCATCGAGTTAGTT GCATCAGCCATAACCATAACCCAGCAACTGGAAGAGAATAAAGTAAGCTG ATAATGAAACAAGCattgaaatgaatttgaatttgtcaTTTGTTTCTCTC Aataataaatctaaaattaagtttttaatttgtttttcttcttcattttc gcaAGGAACATTTAATAAAGTTTCTTGATTTGACCAGTCTAGTTTTGAAG AAAGTTCGTACACAAAAAAATGGTAAGTTTGAACTTGGACATTATCAGTC AGAACCACTATatagaaatggcaactattgccttaacgggaaggtgaaaa acttcccgaaatggaTAGAGTTTCCGAATCAGGAAGTTAACCAGTTATTC CCGATCGGGAATGTGACCTCTGCGCTCTCCGGAAAAGGTCGTGGAAGGTA AATAGCTGATGCctattgtaaaagagggtgaatAAATACCTTTCACCGGG TAGTTAAGAAATCTACTGGGTAATcgcttcttaattctactttccccatt cccaattaaaaacttccctatttggaaactttttctcgatcgaggagaaa caaaaatttgctttgtttacaaaattatatttcccGTTTGGGAacgatga aaagttcttgaccaaaacgggaaacaaaaaagtgatgaaattttcaatct ggaaaaagtttccttttcgggttattttcaccttcccgtttgggaaatat ttcccgttaaggcaatagttgccatttccatgtagtggttccgactgATT ATTAAAATAAGATAATGTACTTTCGAAGTTTTGATCTGTTAAATTACTtc caaaatttaatttattcacAAAAAGTGGCAATAATACTCTAACGCTTTCA AgtctaaatttttttcaataatcttAACTACAATATAGAATCTCCATAAA TAGAATACAAGTTTTAACTAGGAGTGCATCAGCTTTTGAGGAGCTGGTAA CTAAAATACAAGGTTAAAACGATAAGATATTTCATCATATTTCCAGGATg gaaacatcatattttcaaaatatttctaaattttggaaatatcatatttc taaAAGTTGGAAAtactttgaaaatatgatatttaaaTGAATTACATATA AtacaaatatataaaatatagaaaagtcatatttacATATTTTTCGCACA GTGCTGCTCTTCTGTACTTGCATTCTTCCTTTTATAAAATTCCAGGAAAA TATTGGATCAAAGATCTTTTACTCGAGTTTGATTCTCATTGCTGTTGGGT CAGTTTCAACCAAAAATCTCATCCTCGTTGGCAAGAATCAAAAAACATTG TTAACGCATTATACTGAATTTCACACACccaaaatccaacattgtttCTC GAAGTGTCATTACGATAAATCATGTTACTCTTTGGAGGTTGTACAGACTA CATTATACCATTGCAAGTTCCATAACCAGTTCATTAAGCGATCAAACCGA ACAACAGAATCGAACACAAATATCTACTCAGAGATACGAAGTTGTGACGA TCTCTTCGATATTGGTATAAGGAATGCAGGTGCttatgaaatgaatttta tgggTGAAGGCAAAAAAATGATCCGATGTTATTTTGATGAAGATGGTGGC TGGCTAGTGTTTCAACGAAAAGTTGATGCTTCAGTGAATTTCAACATTGG ATGGGATTTCTATAAAAATGGTTTTGGTGACCCAAGAGGTTAGTTTTGTA CTTTTCTCAcgactttctttttttcaaagttcagacagacagacagacag acagaccaACTATGCTAATAAATAAACTGGTTGTATTCTTTCTGTTAGGG AGCTTCTGGCTGGGTAACGATCTGATTCACGAAGTGACCAGCCAAGCACA ACATCAAATCAGAATCGTTCTGACCACTTTTACTGGAGGTGTTAGTATTT CAAAATATGATCACTTCGAAGTCGCAAGTGAGGCAATGAAATATCAGCTA ACAGCAACTAATTTCAGTCAGGGGTTCGATTTATTCAAAAGCTGCGATGG TATGTTTTTCAGTACAACAGATCGCGACAATGATATAATTGCTAAAAATT GCGCTAAATTAAAAACACGAGGTGGTTTTTGGTACTCAAAATGCGGTGAC TTTTTTCCTAATGGTATTTACTATGAAGAAACTGATTCGTTTAAACCTGA CCCTTATTTGTATCATGGCATTAGATATACGAAATGGAACCGTCTTTATA CTTTGAAATCAGTTGAAAtgatgatcaaaagaaaagagTAGCGTATGACT TGGGTAGCTTGAAGCCCGGggccacttatagctttttgTTAGTCTGATGG CGTTGATAAGCGGCCGGTGTAGTTGGACCGATTcgattttttggctttgc ttgaggtggcAGCAAATCCATAGtactagatccagtccctttttggag
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032557XLOC_032557Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051377-exon-scaffold_201-1491911889:151459..151478TCONS_00051377-exon-scaffold_201-1491911889:151459..151478Clytia hemisphaericaexon
TCONS_00051377-exon-scaffold_201-1510915933:151459..151478TCONS_00051377-exon-scaffold_201-1510915933:151459..151478Clytia hemisphaericaexon
TCONS_00051377-exon-scaffold_201-1575043694:151459..151478TCONS_00051377-exon-scaffold_201-1575043694:151459..151478Clytia hemisphaericaexon
TCONS_00051377-exon-scaffold_201-1491911889:155330..155656TCONS_00051377-exon-scaffold_201-1491911889:155330..155656Clytia hemisphaericaexon
TCONS_00051377-exon-scaffold_201-1510915933:155330..155656TCONS_00051377-exon-scaffold_201-1510915933:155330..155656Clytia hemisphaericaexon
TCONS_00051377-exon-scaffold_201-1575043694:155330..155656TCONS_00051377-exon-scaffold_201-1575043694:155330..155656Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_201supercontigscaffold_201:151459..155656 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 0.250698 0 0.569561 0 0 0 0 0 0 0 0 1.19685 2.30832 1.89775 0.7833 0.385985 0 4.64587 6.29144 0.248564 0 0.589536 0.267987 0.27602 0.492683 0 0 0 0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00051377 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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