TCONS_00055481 (transcript) - C. hemisphaerica

Overview
NameTCONS_00055481
Unique NameTCONS_00055481
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length590

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00055481 ID=TCONS_00055481|Name=TCONS_00055481|organism=Clytia hemisphaerica|type=transcript|length=590bp
ATTATTCAAAGTTATGATCTCATTAAGCgaTAAACTAACAAACAACAATG
GCAAACTTGACGACCAGGCATTTATGTTTGGCTATTTTGACGACGTTTAG
CATGCTGACCACAAAGTTCGAAGGATGTGAATGTCGTTCAATTTCTTCGT
GGTTGAAAGATTCTGATTATCCTGAAGTTGACCAAAAAACTTTCGGTCAA
GGTTCATTTACCCTTGGTGTTCCTGCAGGCCACAGTTGTGCTGAGAAGAA
TTTCCAAGTTCCCGGTGGCCGGCTGATTTGCACGAAAACCAAAACTAATG
ACGTCATGTGTATACCATCATGCAAAAAAGATCTCTTCTTAAGAACTGAT
TATGATTCTCACAAGTCGGTCATTGCGAAATTCCCGATTTTCTTGTGCAA
GAGTGGCAGCTTGTTTTGGACAGATATTCAAAACAACAGACTATCATTAC
CAAACCCAAGATGCGTTAAGAAAGACGACTTCTTGAATGAAATCTTGGAA
GATAAAGAATAAATCCTTTCCTCTCTCATAAATGTTCACCTGAAAAATTG
TCACTTTATTACAGAATAGATATTGTCAATTTATTTTAGa
Run BLAST on NCBI

transcript from alignment at scaffold_253:256370..258295-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00055481 ID=TCONS_00055481|Name=TCONS_00055481|organism=Clytia hemisphaerica|type=transcript|length=1926bp|location=Sequence derived from alignment at scaffold_253:256370..258295- (Clytia hemisphaerica)
ATTATTCAAAGTTATGATCTCATTAAGCGGTGTATATATTTTTAATTATC
GTACAATTGACCCCTTGTTCCCTTTGTAGAAAACCGTCATCCTTTTGTCC
TTTCGATTTTTCACAAAAATAGTTCTCCGTCATCATAATTTTGCTGACGT
TTTCAATAAAGTGTTTTTCTTCTTCTTTTTCTCATATTTTTGTATTTTTG
CCACCATAGATGGTCTTCTTGTGGTGGAACATTGCATTTCATGATAGCTT
TAAGCTTAATTTTGTTTCAAAGTTTTGATGATCTCTTTCTAGAGTTGGAA
AACTACACCAAGATTCTTGGCCAAAAGTGGTCTTTCATTGGTCATTTAGT
GATTTAAACTTTGATTTCTTGATTGATTTGTCTTTTAATGTTTAGTGTAA
GTGTGGTGTGGTTATAATATGCGACAACTTTTTCATTGTTATCAATTCAG
TTTAGAATTAATGAAACTGACCTCATGTCAAATTAAAGTTTTTCATGGCT
CCTTTCTTATTTGCTACACAGTATACATATTTCGAAACTTTTGTCCATAT
GACGTGCGAGGGGTTAAATTCAGAGAATTAAAACCATTGAGAAGAATGCA
ACATTGCAAATACAACTTTCAGTTTGCCAAATAATACCACACTACTGCAT
CGTTTATTTTTGATTGACAAATTTATCGCATTGTTGAAAATGAGATGACG
TGAATATATTCGGTTTGTTGGATTTGGTTTTTCCTCAGTAAGAGTGGGAA
GAAAATGCGATTGTACGTTATATTTATACCACGAAATGATATTACAAGTC
ACGTATTTGTGTTTGTAAACAAAAAAAAAACAGCCTAATTGATAGTCTTG
CAAAACAAATGAAGTCTTTCTAATTTTCTTTAAAATAAAATGATGAAGAG
CTCGCTGTTAATTATGATTGACTAATGCTATGGCAAGATTTGAATCTTGA
ATTTACTTTTTTTTCATCTTTAGATAAACTAACAAACAACAATGGCAAAC
TTGACGACCAGGCATTTATGTTTGGCTATTTTGACGACGTTTAGCATGCT
GACCACAAAGTTCGAAGGATGTGAATGTCGTTCAATTTCTTCGTGGTTGA
AAGATTCTGATTATCCTGAAGTTGACCAAAAAACTTTCGGTCAAGGTAAA
TATTTGAAGAGTTTCAACTATGTACATTTACATACTTTCAAACTCACTTT
GTCTTTTCTCATAATGGTAGATGAATTGTGATGTTGCAGCTCAAACAGTA
AAGGAAAAATATGGGTAAACAACTGAAAATAATGAATTGAGTTAGAGTCA
ATTCAATAATGGAACAGTTTTGGTGCCATCGGGTAGAGCGTGAAATTTGG
AGCAAAAAATTATGCTAAAAGTTTCATACAGCACTATCACTAGTCATTTC
GAATACGATTGAATTTTAAAGTTTGTTGATAGTTTGTAGCTTTATGTACT
ATTCTCTGGTTGTAAAGAACGAACGTTGAGTCCGACAACTCTATGCTGAT
TTCTCTTTTTCTCTAATAATTCTTTGTTTTGTTGCAGGTTCATTTACCCT
TGGTGTTCCTGCAGGCCACAGTTGTGCTGAGAAGAATTTCCAAGTTCCCG
GTGGCCGGCTGATTTGCACGAAAACCAAAACTAATGACGTCATGTGTATA
CCATCATGCAAAAAAGATCTCTTCTTAAGAACTGATTATGATTCTCACAA
GTCGGTCATTGCGAAATTCCCGATTTTCTTGTGCAAGAGTGGCAGCTTGT
TTTGGACAGATATTCAAAACAACAGACTATCATTACCAAACCCAAGATGC
GTTAAGAAAGACGACTTCTTGAATGAAATCTTGGAAGATAAAGAATAAAT
CCTTTCCTCTCTCATAAATGTTCACCTGAAAAATTGTCACTTTATTACAG
AATAGATATTGTCAATTTATTTTAGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034908XLOC_034908Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055481-exon-scaffold_253-1575043694:258267..258295TCONS_00055481-exon-scaffold_253-1575043694:258267..258295Clytia hemisphaericaexon
TCONS_00055481-exon-scaffold_253-1575043694:257151..257322TCONS_00055481-exon-scaffold_253-1575043694:257151..257322Clytia hemisphaericaexon
TCONS_00055481-exon-scaffold_253-1575043694:256370..256758TCONS_00055481-exon-scaffold_253-1575043694:256370..256758Clytia hemisphaericaexon
TCONS_00055481-exon-scaffold_253-1510915933:258267..258295TCONS_00055481-exon-scaffold_253-1510915933:258267..258295Clytia hemisphaericaexon
TCONS_00055481-exon-scaffold_253-1510915933:257151..257322TCONS_00055481-exon-scaffold_253-1510915933:257151..257322Clytia hemisphaericaexon
TCONS_00055481-exon-scaffold_253-1510915933:256370..256758TCONS_00055481-exon-scaffold_253-1510915933:256370..256758Clytia hemisphaericaexon
TCONS_00055481-exon-scaffold_253-1491911889:258267..258295TCONS_00055481-exon-scaffold_253-1491911889:258267..258295Clytia hemisphaericaexon
TCONS_00055481-exon-scaffold_253-1491911889:257151..257322TCONS_00055481-exon-scaffold_253-1491911889:257151..257322Clytia hemisphaericaexon
TCONS_00055481-exon-scaffold_253-1491911889:256370..256758TCONS_00055481-exon-scaffold_253-1491911889:256370..256758Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_253supercontigscaffold_253:256370..258295 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.953782	1.21301	0.648507	0.515745	3.80938	3.98655	2.43923	2.85434	2.43895	3.50473	1.28394	1.0059	9.90996	5.65813	27.2305	23.7124	21.6662	22.6117	4.12905	3.3777	1.89066	1.40684	0.956324	1.4273	0.483541	1.93107	1.68791	0.624081	1.03353	0.540303
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00055481 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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