|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00051144 ID=TCONS_00051144|Name=TCONS_00051144|organism=Clytia hemisphaerica|type=transcript|length=1978bp atttttatcttttattttagaGTGACTTACCGTGTTATCTTTGGATTCAT TATCGCTTTGCTCTTAGTAAAAGctttcaaaatCGGAATCGAATTATTAC AACAAGaGGATATCGAATTACCACTGAAGCCATTCATTGTTGGAAAGAAT GATACTGGCTTCTATAATAATGAGaCAATAATTGAAGACAGTTGGATGGC AGTTCAATTTGAAAGACAGCAAAGACTGAGGGAATTTTGTGCTAAAAAGA ATTTAGAAGATTTACCTCAACCAAAATTTGCACACAATTGGATATATAGC AACAATGCGAGAGTTTCATACTGTTCTATTCCAAAAGTTGCATGTACAAc atggaaaaaactttttcagGTATTCTATGGACGATATCAAAGAGTAGAAG AAATTAAAATCAGTAAAGATGATATTCATGAGCTTAGGTATAAATAtcat gaaaacatagattcatatACGGCTGACTTAAAAACTATGCAATACTTTAA CTTTATAATTGTTCGACACCCATTGGAAAGACTGGTTTCAGGGTATCGGA ATAAGATCGAAAAACCATTCACGCcgtattttcaaaagaaagatGGAAGC CAAATGCTACGTTTGTCACGGAAAGGTATGACAGAGGCAGAATACCGAGC AGGCAAAGGTGTTACGTTCCACGAATACATCAACTACATAATTAAAACAC CAATGAATAAAATTGACGAACATTTTGGGGGCATGATAGGACTATGTCAC ATTTGCAATGTAAAATATGATTTTATAGCAGACATGTCTACATTGTACAA CGATTCGGatattattttgaagctaaTAGGATGGTACTATCGTCTTAGGT TTCCGAGAAGTTCGAAAGACAGTTATAAAAAAGACGCAGTTGAGATTGCT CCAGAATACATCAACAGACTATCAGATGACATCTTGAAGAAAGTCtatga aaaattcaaagatgACTTTGAAGCTTTTGGCTACAAATTTGATATTAAAG GAATCCGGAATGGTAATTTCTATTAAcaatttcaacaattttaaGAAATA GAAGATTTGACCTCTTTGAATTTCATAATCTTATAAGTTATAGTCCTTTG AAGTGATACCGGTATTTTAACGTCTCCAACACCCGTAGTCGGCGGCAAAT GTGTTAAAAAACCCGTCTTTAGTTCGATCTTAAAGGCTTCTACGCACTCA GTATTTTATGGTCGGGGAAAAAAGCGCACGGCTTAATTATTGCATACATT ACATAAATCAAGCCTTCAAAGACTGTCGTTAAAGGATTATGGCACCTACA CCTACACATCCAAGATTTTTAAAGCCTTGAGATGTTTTTACCCTTTTGAG TTTCAatcctcaaaatgttcttaaccctttaagtactAATGACGAGTATA CTAGACATGTAATGCCCAGTTTATGTTAGAAAtagtcatttttggtctaa ctcgtaggaattggattgggtttcatggtcaagcaaaaaaaaaatcaaaa gtgagtctttccagcgagattttaagccaaaaattcaaaaaaatgcaaaa atttgacaaaagtccacttttttaagattttgaccgttttttgaccattt tttgtcAACGAGTGattcaagaacctccaaaattggccctgcttgacttg attctgtcctctagcgaattaatttgaagtttcactactgggcacctttc tatcattcagcgCAGCAGGGTTAATATGTTCATAattatttcaccatttt gtgagcattttatccatttttctcaaaaatcaggtgttttagattCCACA TAGctttaagatgttcttaacttgttcttaatatttttgccttCGAAGCC TTACGTCATTATGTAGTTTGGCCttgtaaaaaaaacgtgtaggtgcCATA ATCCCTCTTAGCCTTTCCgaaaggttcgaattagaaTCAGTATCGTTTAG TTGTTTTTACATACAGGAAAGTGTacat Run BLAST on NCBI transcript from alignment at scaffold_199:60078..66912- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00051144 ID=TCONS_00051144|Name=TCONS_00051144|organism=Clytia hemisphaerica|type=transcript|length=6835bp|location=Sequence derived from alignment at scaffold_199:60078..66912- (Clytia hemisphaerica) ATTTTTATCTTTTATTTTAGAGTGACTTACCGTGTTATCTTTGGATTCAT
TATCGCTTTGCTCTTAGTAAAAGGTGACACAGATTTGTATTTTCACGCAA
ATTTCATGAAAGAATTTCGGTAAAATTACTCAATGAAAAATAAATTCCAG
GGAAAATATAATCCTCAAAAAAATGTTCTTATCTTCATTATTTTGTTAGT
ATTTTTTAGCAATTTCTTAACCCTATTCATACTAGGCTTTTAGGGGTGGT
TCAAAAACTAGGGGGAGGGGCTGTTCCTGTATCACCCCTTAACTTTTGAT
CTAGTGGGTGTTTTCGGATGAAATTTGGCACTCAAGATCCTTGTCATAAG
GTAACTTTTTTGACAACATTTTTTTGATGACGTCATCATGCTCAAAGTGA
GCAAAAATCGAAAATTTCGTTTGTTTTTATAAATAGTTCCTTCAGTCTAA
AATGCTTATTATATCCTAATCATCCAATAAATTGCGGTTTAAACGATATA
TTTGATATAAAAAATAAATTTGTATTGAAAATGTCTCAATTTTTGTCACA
CCTTCCTGTCAGAAATGTCATCATGCTCAAGGTGTGAATTTTTTGTTTGT
TTTGAAGCTAAATAAAAGGTAGGAATTTACAGAAAATTTTATGACAAAAG
CTTTATTAATTCAGGAGCTATTAGCATAAGCTTTCACTCCCTAACAGAAA
CAACACCCCCCTAGTAAGAATAGGGTTAAGAGATGTGAGTATTTAGAGTC
CGCAAAGCCTTAAAATGCTCTTAACTTACTCTTAAGATTTTGGCAATCGA
AGCCTTGTTTTCTTATATAGTTTGTTCCTATAGAAAAGTGACGTGTAATT
ATCAATTATAATGGAGAAAAGTTTTTGAATATACATTCTGATAAATAACG
AGATTGCTCACGGGAATTTCTAACCCGCACGAGCAAACCCGCATCTGTCA
ATCATCTTTTAGACCTGTCAATCATTTTTTAGCAGCATTTTCTTTCAGTT
TTGCTTTTCTTTTCACTTGTGGTTCTGAAAAAAGTGTTTGTAAGATAATA
AAAAAAGACGAAAGTCGATTTTTATGCATTTTTTTTAATTAAACGTTTTG
GAATACTGGATTTTCAAGAGAAGGGGAAGGCATGACTCTTGACTCTTGAC
TCTCCACACGCTAACCAACCTGATCCATTTTGAAATACTGTACTTGAGTC
AAACTGCACTGAGGTGACACTACTTAAAAAATTTTTGTTTCTTAAAATTA
TAACGGAAATCTATCAATAAGAGCTCATAAAACCAAAAAAAGTTTGGTCA
GTGCTGACAAAATAACACTAACTTCATCGCACCGTATAGGATTCGAACTC
TCAAAAACAACTTTCCACCGCCTTATCCACTCGGCCGCTGTGAGATGTAG
TAAAATGATTAACAATGATTAAGAATACCATATCTTTATTTGCTATGACC
TATAAAATTTTATTTACCATGTCAAGGTATTAACTTCTTAAACAAGTGAT
TTTAGATCGTTTCTAACATGCGGAAGCAGATATCACTCGTCGAGATTTTC
AGGACTCTTTAGTTGAAGAGTGACTCTTCTTAACACTTATTCCAATTCTG
TAAGGGGACTGTAGCAAACGGGCTGTAAACCCTGCTAGACCCTGCTAGTG
CCTATAAAATTAGAAATTCCATCTCGGGGGTAAGGACACTCTCCAATCTC
GTTAAAGTCTCAAAAGACTGAAAAAGGACCTTTTTCTTGCATACAGTACC
CATATACAGCAGACAGAATACACAGAGCGTACACACGCGGGCGATTAAAC
ACGATCGCGAGAAATGCGGGTCAAAAAATTCCCGTGAGCAATCTCGTTAT
TTATCAAAAAGTTTGAATATAGCACAATATGATGCTAAGTTTAATTTCAT
ATTCTTTTTTTTTTTCAGCTTTCAAAATCGGAATCGAATTATTACAACAA
GGTTTTTTTAGCAAAATTCATTAAATTTTCATCAGCGTTTTTTTTCATTT
CTCACCCAGACGTCTTATTCAAATTTTTTTTTTTTTTGAGGCTGCATAAA
GGCAACTTTTTTGGTTGAAATCAGTTCACGCTAAAATTAAAACGATTGCG
CCAAGAATATTCTTGATTACGCTACTAGCCAAAATATGGTCTTTACAAAT
TTTCTTTTTGATTTCTGCTTTTTCCTAAAGGTACCTTTGTTCACAACGAT
TCTACAGATTAAAAATAATTTTATCAATCATTTGACTTTTTATTTTAATT
TCAGAGGATATCGAATTACCACTGAAGCCATTCATTGTTGGTGAGTCAAA
ATACCAGTTTTCATAAATTATTTCGAGTGAAACGACTATGCCTTGCCTTG
AAACCATTACCAAGGTGATTAAATCCCTTGAGTCAAGTGTTACTCTTACT
GTTCAAGGGGTCAACTAATGCTTGTCCAGGGGGTTGGACCTGCTGTCCGG
GGGGGTCAAAGGTCACAATGTCCGGGGGGTAAATTTCCAAAATATGTTAT
ATCCTCAACCCCCCCCCAACGTTCAAACTTTTTCTGGAAGAGCCCAATAA
AGTAAACTTCTTAGGAACTCCTTCGGGAATCAATTACCAATATTTTGAAA
ACGAGGTAATAGTTGCTTGTGGTACGTATAGTAATTTTTGAAAAAGGTCT
ATTCTTTTCACATCCTGCACCATCAAATAAATCTTTCTCACCTTTTTTCC
GTCTTTTTATATATAGTCAGTAGTAAGTGGATAACCTTTTGATATTTTGG
GACAGGATGAGGCTAAGTAAGTGACACCGCGACCATGGTTTGGCCCGAGG
GGAAAAGGAATTTCAAAAATTTAAGATCATGTATGAAGTAAAATCCTCAT
AATTTATGCAAAATCTTGTGACTTCTATATCTAATATTTCAATCTTTTAA
ATACCTATATTAATTTTGGGGATTGTACATCTATCGATTGAACGGAGAAT
TGTAATCTTATTCCAATCATTCTAAGGGGGGGGGGGGGTTGTTGCTTGCG
CCTCTTAGACGTTATATTCATGGCCCCCTCCGCCACTTTCAATTTCATGG
CGTGGGCCTGAACTTAGATTGATGAGTTTTGAGGATTTTATTTTATATAG
GAACATCCGAGTTTTTTTGTTGGACACACTGTCATATTAAATTTCTTTTT
TCTTTTTCAATTAAATGAAATGTATAGGAAAGAATGATACTGACTTCTAT
AATAATGAGGTAAGGTCTGGTCAATTCAATGAACGGATCTTGTATTAGAC
GATCTTGTCATGATCATCTACAAAAGGTTACTAAAAGGGAATAATTCAGG
AGGCGAGAAGAATTTGTGACTGGTGGTTAGCCCANAACTTTTTCTGGAAG
AGCCCAATAAAGTAAACTTCTTAGGAACTCCTTCGGGAATCAATTACCAA
TATTTTGAAAACGAGGTAATAGTTGCTTGTGGTACGTATAGTAATTTTTG
AAAAAGGTCTATTCTTTTCACATCCTGCACCATCAAATAAATCTTTCTCA
CCTTTTTTCCGTCTTTTTATATATAGTCAGTAGTAAGTGGATAACCTTTT
GATATTTTGGGACAGGATGAGGCTAAGTAAGTGACACCGCGACCATGGTT
TGGCCCGAGGGGAAAAGGAATTTCAAAAATTTAAGATCATGTATGAAGTA
AAATCCTCATAATTTATGCAAAATCTTGTGACTTCTATATCTAATATTTC
AATCTTTTAAATACCTATATTAATTTTGGGGATTGTACATCTATCGATTG
AACGGAGAATTGTAATCTTATTCCAATCATTCTAAGGGGGGGGGGGGGTT
GTTGCTTGCGCCTCTTAGACGTTATATTCATGGCCCCCTCCGCCACTTTC
AATTTCATGGCGTGGGCCTGAACTTAGATTGATGAGTTTTGAGGATTTTA
TTTTATATAGGAACATCCGAGTTTTTTTGTTGGACACACTGTCATATTAA
ATTTCTTTTTTCTTTTTCAATTCAATGAAATGTATAGGAAAGAATGATAC
TGGCTTCTATAATAATGAGGTAAGGTCTGGTCAATTCAATGAACGGATCT
TGTATTAGACGATCTTGTCATGATCATCTACAAAAGGTTACTAAAAGGGA
ATAATTCAGGAGGCGAGAAGAATTTGTGACTGGTGGTTAGCCCAGGGCGG
AGTAAGCAGTGGCGGAGGTTTTTACAGTGTTTCTTCCAAACTATACCGCC
ACTATATTTTTTATAAACCGCCCTGACGCCGTGACTCTACTGCGTATATT
TTTCCCGCGCTTACTATCCCTCTAACGGACCATAGCACCGTCTAACCTAG
CGAGTCACGTTGTTCAAGGATTTCTCACATGGTCAACCATCTATACAGTA
GAGTCTTCTAGAACCTCTATAACTCGATTGTCTCCTTAACTCGAACAAGT
TTTCTGGTCTTTTCAGTTAGCAACGCCTGTAAACACCAATCGCAATAAAG
AGTTATGGAGACTCTATTGTATTTTGTTTATAAGAGTTAGTAAAGTGACA
GTCAAGCAGTTCTTATTTTTCGAATACCATAAAGTACCGAAGTACTTTAG
TGTGCCCCCCCCCCCCCCCAAGAGTCTCCCCAAGTCCCTCATCGCGCCAT
TAATCGCACGCTATGTCACACCAATTGGATCCTAATTTTGGCCAAAATTC
AAACTTTTTTGGTCGTTAAATTTCCCGATACTCTCTTCGATAACCAAATT
CTTGTGATATAAACTCTATCTTCTGAGACTAAACTATCAAACCAATTTCC
CCCAAAAAATTCAATTATTTTTATAGACAATAATTGAAGACAGTTGGATG
GCAGTTCAATTTGAAAGACAGCAAAGACTGAGGGAATTTTGTGCTAAAAA
GAATTTAGAAGATTTACCTCAACCAAAATTTGCACACAATTGGATATATA
GCAACAATGCGAGAGTTTCATACTGTTCTATTCCAAAAGTTGCATGTACA
ACATGGAAAAAACTTTTTCAGGTGAGCAAAGGCCAATTTTTATAGCTTTC
TATTAGATAACCGATCTCGTACCCAGAGCCACTTGCACCACTTTTACTAA
TGGACGTCATACAATCTTTCTTGAGTGCTATCACACTCATAAAAAAGCGC
ACAAAGGGAACAGTCTCTGTAATTCGAATCCTTCTCTAACTCGAAGAAAA
TTCTTGGTCTTCTTGGTTCCTTGATTGGAGATCGAATTAGAGAAAGTCCA
TCGTAATTTAATCATTACTTTTTCAGGTATTCTATGGACGATATCAAAGA
GTAGAAGAAATTAAAATCAGTAAAGATGATATTCATGAGCTTAGGTATAA
ATATCATGAAAACATAGATTCATATACGGCTGACTTAAAAACTATGCAAT
ACTTTAACTTTATAATTGTTCGACACCCATTGGAAAGACTGGTTTCAGGG
TATCGGAATAAGATCGAAAAACCATTCACGCCGTATTTTCAAAAGAAAGA
TGGAAGCCAAATGCTACGTTTGTCACGGAAAGGTATGACAGAGGCAGAAT
ACCGAGCAGGCAAAGGTGTTACGTTCCACGAATACATCAACTACATAATT
AAAACACCAATGAATAAAATTGACGAACATTTTGGGGGCATGATAGGACT
ATGTCACATTTGCAATGTAAAATATGATTTTATAGCAGACATGTCTACAT
TGTACAACGATTCGGATATTATTTTGAAGCTAATAGGATGGTACTATCGT
CTTAGGTTTCCGAGAAGTTCGAAAGACAGTTATAAAAAAGACGCAGTTGA
GATTGCTCCAGAATACATCAACAGACTATCAGATGACATCTTGAAGAAAG
TCTATGAAAAATTCAAAGATGACTTTGAAGCTTTTGGCTACAAATTTGAT
ATTAAAGGAATCCGGAATGGTAATTTCTATTAACAATTTCAACAATTTTA
AGAAATAGAAGATTTGACCTCTTTGAATTTCATAATCTTATAAGTTATAG
TCCTTTGAAGTGATACCGGTATTTTAACGTCTCCAACACCCGTAGTCGGC
GGCAAATGTGTTAAAAAACCCGTCTTTAGTTCGATCTTAAAGGCTTCTAC
GCACTCAGTATTTTATGGTCGGGGAAAAAAGCGCACGGCTTAATTATTGC
ATACATTACATAAATCAAGCCTTCAAAGACTGTCGTTAAAGGATTATGGC
ACCTACACCTACACATCCAAGATTTTTAAAGCCTTGAGATGTTTTTACCC
TTTTGAGTTTCAATCCTCAAAATGTTCTTAACCCTTTAAGTACTAATGAC
GAGTATACTAGACATGTAATGCCCAGTTTATGTTAGAAATAGTCATTTTT
GGTCTAACTCGTAGGAATTGGATTGGGTTTCATGGTCAAGCAAAAAAAAA
ATCAAAAGTGAGTCTTTCCAGCGAGATTTTAAGCCAAAAATTCAAAAAAA
TGCAAAAATTTGACAAAAGTCCACTTTTTTAAGATTTTGACCGTTTTTTG
ACCATTTTTTGTCAACGAGTGATTCAAGAACCTCCAAAATTGGCCCTGCT
TGACTTGATTCTGTCCTCTAGCGAATTAATTTGAAGTTTCACTACTGGGC
ACCTTTCTATCATTCAGCGCAGCAGGGTTAATATGTTCATAATTATTTCA
CCATTTTGTGAGCATTTTATCCATTTTTCTCAAAAATCAGGTGTTTTAGA
TTCCACATAGCTTTAAGATGTTCTTAACTTGTTCTTAATATTTTTGCCTT
CGAAGCCTTACGTCATTATGTAGTTTGGCCTTGTAAAAAAAACGTGTAGG
TGCCATAATCCCTCTTAGCCTTTCCGAAAGGTTCGAATTAGAATCAGTAT
CGTTTAGTTGTTTTTACATACAGGAAAGTGTACAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00051144-exon-scaffold_199-1575043694:66840..66912 | TCONS_00051144-exon-scaffold_199-1575043694:66840..66912 | Clytia hemisphaerica | exon |
TCONS_00051144-exon-scaffold_199-1575043694:64962..64994 | TCONS_00051144-exon-scaffold_199-1575043694:64962..64994 | Clytia hemisphaerica | exon |
TCONS_00051144-exon-scaffold_199-1575043694:64623..64658 | TCONS_00051144-exon-scaffold_199-1575043694:64623..64658 | Clytia hemisphaerica | exon |
TCONS_00051144-exon-scaffold_199-1575043694:62894..62925 | TCONS_00051144-exon-scaffold_199-1575043694:62894..62925 | Clytia hemisphaerica | exon |
TCONS_00051144-exon-scaffold_199-1575043694:61942..62136 | TCONS_00051144-exon-scaffold_199-1575043694:61942..62136 | Clytia hemisphaerica | exon |
TCONS_00051144-exon-scaffold_199-1575043694:60078..61686 | TCONS_00051144-exon-scaffold_199-1575043694:60078..61686 | Clytia hemisphaerica | exon |
TCONS_00051144-exon-scaffold_199-1510915933:66840..66912 | TCONS_00051144-exon-scaffold_199-1510915933:66840..66912 | Clytia hemisphaerica | exon |
TCONS_00051144-exon-scaffold_199-1510915933:64962..64994 | TCONS_00051144-exon-scaffold_199-1510915933:64962..64994 | Clytia hemisphaerica | exon |
TCONS_00051144-exon-scaffold_199-1510915933:64623..64658 | TCONS_00051144-exon-scaffold_199-1510915933:64623..64658 | Clytia hemisphaerica | exon |
TCONS_00051144-exon-scaffold_199-1510915933:62894..62925 | TCONS_00051144-exon-scaffold_199-1510915933:62894..62925 | Clytia hemisphaerica | exon |
TCONS_00051144-exon-scaffold_199-1510915933:61942..62136 | TCONS_00051144-exon-scaffold_199-1510915933:61942..62136 | Clytia hemisphaerica | exon |
TCONS_00051144-exon-scaffold_199-1510915933:60078..61686 | TCONS_00051144-exon-scaffold_199-1510915933:60078..61686 | Clytia hemisphaerica | exon |
TCONS_00051144-exon-scaffold_199-1491911889:66840..66912 | TCONS_00051144-exon-scaffold_199-1491911889:66840..66912 | Clytia hemisphaerica | exon |
TCONS_00051144-exon-scaffold_199-1491911889:64962..64994 | TCONS_00051144-exon-scaffold_199-1491911889:64962..64994 | Clytia hemisphaerica | exon |
TCONS_00051144-exon-scaffold_199-1491911889:64623..64658 | TCONS_00051144-exon-scaffold_199-1491911889:64623..64658 | Clytia hemisphaerica | exon |
TCONS_00051144-exon-scaffold_199-1491911889:62894..62925 | TCONS_00051144-exon-scaffold_199-1491911889:62894..62925 | Clytia hemisphaerica | exon |
TCONS_00051144-exon-scaffold_199-1491911889:61942..62136 | TCONS_00051144-exon-scaffold_199-1491911889:61942..62136 | Clytia hemisphaerica | exon |
TCONS_00051144-exon-scaffold_199-1491911889:60078..61686 | TCONS_00051144-exon-scaffold_199-1491911889:60078..61686 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_199 | supercontig | scaffold_199:60078..66912 - |
Blast
BLAST of TCONS_00051144 vs. Swiss-Prot (Human)
Match: CHSTB (Carbohydrate sulfotransferase 11 OS=Homo sapiens GN=CHST11 PE=1 SV=1) HSP 1 Score: 138.272 bits (347), Expect = 1.638e-35 Identity = 77/228 (33.77%), Postives = 121/228 (53.07%), Query Frame = 1
Query: 319 YCSIPKVACTTWKKLFQVFYGRYQRVEEIKISKDDIH---ELRYKYHENIDSYTADLKTMQYFNFIIVRHPLERLVSGYRNKIEKPFTPYFQKKDGSQMLRLSRKGMTEAEYRAGKGVTFHEYINYIIKTPMNK---IDEHFGGMIGLCHICNVKYDFIADMSTLYNDSDIILKLIGWYYRLRFPRSSKDSYKKDAVEIAPEYINRLSDDILKKVYEKFKDDFEAFGY 984
YC +PKVACT WK+L V GR + + ++I ++ H L+ +I LK+ Y F+ VR P ERLVS YRNK + + F K+ G+++++ RK T+ R G V F E++ Y+I + +EH+ + LCH C++ YD + TL DS+ +L+L G L+FP +K + D E+ E+ +S + ++YE +K DF F Y
Sbjct: 120 YCYVPKVACTNWKRLMMVLTGRGKYSDPMEIPANEAHVSANLKTLNQYSIPEINHRLKS--YMKFLFVREPFERLVSAYRNKFTQKYNISFHKRYGTKIIKRQRKNATQEALRKGDDVKFEEFVAYLIDPHTQREEPFNEHWQTVYSLCHPCHIHYDLVGKYETLEEDSNYVLQLAGVGSYLKFPTYAKSTRTTD--EMTTEFFQNISSEHQTQLYEVYKLDFLMFNY 343
The following BLAST results are available for this feature:
|